Wall clock time and date at job start Tue Mar 31 2020 18:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46992 * 2 1 4 4 O 1.45199 * 109.47018 * 240.00036 * 2 1 3 5 5 C 1.34710 * 117.00190 * 89.99899 * 4 2 1 6 6 O 1.21475 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.47726 * 119.99937 * 179.97438 * 5 4 2 8 8 C 1.39651 * 120.14028 * 359.97438 * 7 5 4 9 9 C 1.37982 * 119.88568 * 179.97438 * 8 7 5 10 10 C 1.38146 * 120.11886 * 0.03177 * 9 8 7 11 11 C 1.38762 * 120.28225 * 359.96721 * 10 9 8 12 12 C 1.37690 * 120.19008 * 0.23053 * 11 10 9 13 13 C 1.51116 * 107.25488 * 179.97438 * 11 10 9 14 14 O 1.43929 * 105.95493 * 17.71990 * 13 11 10 15 15 C 1.43924 * 104.97377 * 331.48401 * 14 13 11 16 16 C 1.50697 * 109.47081 * 119.99869 * 2 1 3 17 17 O 1.21281 * 120.00041 * 120.00191 * 16 2 1 18 18 N 1.34783 * 120.00026 * 299.99835 * 16 2 1 19 19 C 1.46494 * 119.99715 * 0.02562 * 18 16 2 20 20 C 1.46495 * 119.99591 * 180.02562 * 18 16 2 21 21 C 1.50700 * 109.47075 * 90.00469 * 20 18 16 22 22 H 1.08003 * 119.99967 * 359.97438 * 21 20 18 23 23 C 1.37880 * 119.99999 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99970 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99979 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46964 * 90.00417 * 25 23 21 27 27 H 1.48501 * 109.47079 * 210.00061 * 25 23 21 28 28 H 1.48493 * 109.47315 * 330.00508 * 25 23 21 29 29 H 1.09001 * 109.47650 * 60.00170 * 1 2 3 30 30 H 1.08997 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47358 * 300.00271 * 1 2 3 32 32 H 1.07993 * 120.05388 * 0.02702 * 8 7 5 33 33 H 1.08004 * 119.93747 * 180.02562 * 9 8 7 34 34 H 1.07997 * 120.10286 * 179.69275 * 12 11 10 35 35 H 1.09003 * 110.15171 * 136.84348 * 13 11 10 36 36 H 1.08997 * 110.15521 * 258.59461 * 13 11 10 37 37 H 1.09001 * 110.15703 * 147.64739 * 15 14 13 38 38 H 1.08997 * 110.15712 * 269.32759 * 15 14 13 39 39 H 1.09002 * 109.47522 * 90.00004 * 19 18 16 40 40 H 1.09007 * 109.46964 * 209.99629 * 19 18 16 41 41 H 1.08999 * 109.47521 * 329.99286 * 19 18 16 42 42 H 1.09005 * 109.46932 * 210.00121 * 20 18 16 43 43 H 1.09001 * 109.47607 * 329.99804 * 20 18 16 44 44 H 0.96999 * 119.99716 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2178 0.0667 -2.2851 6 8 1.9968 1.2608 -2.2544 7 6 2.7101 -0.5618 -3.5281 8 6 2.9656 -1.9342 -3.5664 9 6 3.4247 -2.5158 -4.7303 10 6 3.6324 -1.7429 -5.8564 11 6 3.3805 -0.3787 -5.8250 12 6 2.9259 0.2150 -4.6688 13 6 3.7040 0.1685 -7.1959 14 8 3.7299 -0.9674 -8.0793 15 6 4.1187 -2.0761 -7.2481 16 6 2.0323 -0.7104 1.2305 17 8 2.7296 -1.6964 1.1192 18 7 1.7067 -0.2498 2.4546 19 6 0.8641 0.9409 2.5889 20 6 2.1956 -0.9401 3.6507 21 6 3.5229 -0.3560 4.0606 22 1 3.9590 0.4487 3.4872 23 6 4.1806 -0.8489 5.1676 24 7 3.6494 -1.8284 5.8662 25 14 5.8263 -0.1253 5.6753 26 1 5.6025 1.0003 6.6177 27 1 6.6435 -1.1722 6.3398 28 1 6.5410 0.3712 4.4721 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.8032 -2.5393 -2.6868 33 1 3.6222 -3.5772 -4.7610 34 1 2.7350 1.2777 -4.6445 35 1 2.9331 0.8719 -7.5109 36 1 4.6778 0.6580 -7.1847 37 1 3.6475 -2.9935 -7.6009 38 1 5.2031 -2.1862 -7.2517 39 1 -0.1838 0.6427 2.6225 40 1 1.1218 1.4666 3.5084 41 1 1.0273 1.5997 1.7360 42 1 1.4776 -0.8150 4.4613 43 1 2.3170 -2.0014 3.4337 44 1 4.1123 -2.1754 6.6448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050026355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:19 Heat of formation + Delta-G solvation = -138.815500 kcal Electronic energy + Delta-G solvation = -27953.314201 eV Core-core repulsion = 23835.859703 eV Total energy + Delta-G solvation = -4117.454498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.18648 -41.53960 -40.54256 -38.41992 -37.62282 -36.75256 -34.95008 -33.35593 -32.76400 -32.42474 -29.59846 -29.04498 -27.78558 -26.86130 -25.87193 -24.56651 -23.64918 -22.80601 -21.78586 -20.51010 -19.30885 -18.70653 -18.35091 -17.72473 -17.46521 -17.41430 -17.23088 -17.01303 -16.72762 -16.46694 -16.00167 -15.46942 -15.27185 -14.92398 -14.78658 -14.58659 -14.31839 -14.19076 -14.03571 -13.74941 -13.58222 -13.56749 -13.38741 -13.22558 -13.04552 -12.85523 -12.81692 -12.61685 -12.44849 -12.23267 -12.09971 -11.99099 -11.83169 -11.73480 -11.18151 -10.66313 -10.65898 -10.14032 -9.77359 -9.54278 -8.25533 -6.39994 -0.59383 0.12717 1.11543 1.26996 1.35220 1.38062 1.47999 1.58703 2.26803 2.40174 2.49820 2.88502 3.04451 3.05173 3.35440 3.43132 3.48635 3.71646 3.77717 3.80840 4.06628 4.23832 4.29931 4.32259 4.41163 4.49563 4.53274 4.59209 4.64699 4.66911 4.71750 4.79184 4.84655 4.92451 5.00585 5.07161 5.08701 5.15712 5.16706 5.21826 5.48953 5.54476 5.67204 5.75876 6.01519 6.41981 6.58363 6.68456 7.17347 7.33536 8.81765 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.002411 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.788207 B =11613.051494 C =12337.562206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 H 0.115 0.885 4 O -0.336 6.336 5 C 0.510 3.490 6 O -0.523 6.523 7 C -0.139 4.139 8 C -0.059 4.059 9 C -0.102 4.102 10 C -0.097 4.097 11 C -0.153 4.153 12 C -0.032 4.032 13 C 0.094 3.906 14 O -0.376 6.376 15 C 0.086 3.914 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.598 5.598 19 C 0.067 3.933 20 C 0.260 3.740 21 C -0.547 4.547 22 H 0.051 0.949 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.276 1.276 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.002 0.998 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 4.122 -25.130 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 H 0.133 0.867 4 O -0.252 6.252 5 C 0.356 3.644 6 O -0.414 6.414 7 C -0.140 4.140 8 C -0.077 4.077 9 C -0.120 4.120 10 C -0.097 4.097 11 C -0.154 4.154 12 C -0.051 4.051 13 C 0.018 3.982 14 O -0.294 6.294 15 C 0.011 3.989 16 C 0.287 3.713 17 O -0.457 6.457 18 N -0.331 5.331 19 C -0.075 4.075 20 C 0.140 3.860 21 C -0.585 4.585 22 H 0.069 0.931 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.791 3.209 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.201 1.201 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.164 0.836 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.529 3.853 -25.192 25.884 hybrid contribution 0.893 0.192 1.283 1.575 sum -3.637 4.045 -23.909 24.520 Atomic orbital electron populations 1.22421 0.89074 1.04660 1.06226 1.22574 0.97970 0.96717 0.80612 0.86699 1.86637 1.77012 1.41682 1.19824 1.21526 0.73836 0.84921 0.84107 1.90783 1.49626 1.16311 1.84659 1.19027 1.08669 0.95246 0.91099 1.21664 0.93763 0.93165 0.99147 1.20667 0.99305 1.01781 0.90240 1.21744 0.96053 0.94574 0.97346 1.21172 1.01735 0.95609 0.96851 1.20431 0.94533 1.00678 0.89410 1.21897 1.03658 0.89392 0.83251 1.89085 1.90623 1.18147 1.31594 1.22059 1.01295 0.91598 0.83981 1.20591 0.80700 0.84858 0.85120 1.90661 1.39532 1.28685 1.86855 1.48033 1.50079 1.29585 1.05367 1.22259 0.94772 0.86291 1.04164 1.18854 0.93949 0.91814 0.81430 1.21678 1.06024 1.19262 1.11552 0.93089 1.25825 1.01729 0.95207 0.96181 1.70037 1.40674 1.27013 1.18745 0.85432 0.78769 0.78419 0.78294 1.18666 1.20471 1.20085 0.89511 0.91185 0.86743 0.84058 0.81827 0.83641 0.86781 0.88584 0.86004 0.88057 0.89481 0.90604 0.89370 0.94749 0.98016 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 9.19 71.98 0.66 -3.32 16 2 C 0.08 2.60 2.18 29.85 0.07 2.67 16 3 H 0.12 3.58 6.42 -2.39 -0.02 3.56 16 4 O -0.34 -11.49 8.67 -49.81 -0.43 -11.92 16 5 C 0.51 15.54 7.87 70.33 0.55 16.10 16 6 O -0.52 -16.83 15.61 19.92 0.31 -16.51 16 7 C -0.14 -3.51 5.88 -20.08 -0.12 -3.62 16 8 C -0.06 -1.32 9.62 22.55 0.22 -1.11 16 9 C -0.10 -1.69 10.03 22.19 0.22 -1.47 16 10 C -0.10 -1.52 6.33 -19.62 -0.12 -1.65 16 11 C -0.15 -2.64 6.31 -19.74 -0.12 -2.76 16 12 C -0.03 -0.67 9.59 22.49 0.22 -0.46 16 13 C 0.09 1.21 7.63 71.37 0.54 1.75 16 14 O -0.38 -5.76 11.72 -148.98 -1.75 -7.50 16 15 C 0.09 0.98 7.63 71.38 0.54 1.52 16 16 C 0.50 21.76 7.15 87.66 0.63 22.39 16 17 O -0.58 -31.18 16.08 15.77 0.25 -30.92 16 18 N -0.60 -25.34 2.86 -851.14 -2.43 -27.77 16 19 C 0.07 1.92 8.80 127.77 1.12 3.04 16 20 C 0.26 13.92 5.16 85.63 0.44 14.36 16 21 C -0.55 -31.53 9.39 25.60 0.24 -31.29 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 23 C 0.01 0.57 5.46 84.65 0.46 1.04 16 24 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 25 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 2.22 4.53 -2.39 -0.01 2.21 16 32 H 0.14 3.37 7.61 -2.91 -0.02 3.35 16 33 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 34 H 0.15 2.80 7.65 -2.91 -0.02 2.78 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 1.93 6.95 -2.39 -0.02 1.91 16 40 H 0.08 2.26 8.07 -2.38 -0.02 2.24 16 41 H 0.09 2.04 6.01 -2.39 -0.01 2.02 16 42 H 0.03 1.83 8.07 -2.38 -0.02 1.81 16 43 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 44 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -79.14 373.05 4.85 -74.29 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.03 Total: 11.40 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.55 Total: 17.18 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.15 Total: -82.99 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -1.61 Total: -66.86 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -79.14 4.85 -74.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050026355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.529 kcal (2) G-P(sol) polarization free energy of solvation -79.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds