Wall clock time and date at job start Tue Mar 31 2020 18:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 O 1.45193 * 109.47000 * 120.00494 * 2 1 3 5 5 C 1.34709 * 116.99719 * 270.00060 * 4 2 1 6 6 O 1.21457 * 120.00320 * 0.02562 * 5 4 2 7 7 C 1.47775 * 119.99851 * 180.02562 * 5 4 2 8 8 C 1.39970 * 120.02789 * 359.72101 * 7 5 4 9 9 C 1.38321 * 120.34789 * 179.76576 * 8 7 5 10 10 C 1.37751 * 120.41865 * 0.51420 * 9 8 7 11 11 C 1.40757 * 120.05416 * 359.74205 * 10 9 8 12 12 C 1.41434 * 120.17598 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00005 * 150.18049 * 12 11 10 14 14 C 1.39940 * 120.00445 * 330.18008 * 12 11 10 15 15 N 1.30826 * 120.00266 * 161.72817 * 14 12 11 16 16 Si 1.86801 * 119.99616 * 341.73096 * 14 12 11 17 17 H 1.48500 * 109.47152 * 95.41419 * 16 14 12 18 18 H 1.48498 * 109.46964 * 215.41258 * 16 14 12 19 19 H 1.48499 * 109.47116 * 335.40992 * 16 14 12 20 20 C 1.39051 * 120.03223 * 179.97438 * 7 5 4 21 21 C 1.50697 * 109.47186 * 240.00431 * 2 1 3 22 22 O 1.21286 * 120.00177 * 245.00375 * 21 2 1 23 23 N 1.34783 * 120.00027 * 64.99944 * 21 2 1 24 24 C 1.47148 * 120.97982 * 359.71624 * 23 21 2 25 25 C 1.53721 * 108.15717 * 129.43434 * 24 23 21 26 26 O 1.42964 * 109.14824 * 52.53971 * 25 24 23 27 27 C 1.42962 * 114.16407 * 297.28590 * 26 25 24 28 28 C 1.47154 * 120.98145 * 180.02562 * 23 21 2 29 29 H 1.09000 * 109.46966 * 59.99864 * 1 2 3 30 30 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47185 * 299.99827 * 1 2 3 32 32 H 1.08000 * 119.82452 * 359.97438 * 8 7 5 33 33 H 1.08004 * 119.78860 * 180.26210 * 9 8 7 34 34 H 1.08011 * 119.97647 * 179.76582 * 10 9 8 35 35 H 0.96993 * 119.99810 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.20181 * 359.95034 * 20 7 5 37 37 H 1.08998 * 109.68524 * 249.21144 * 24 23 21 38 38 H 1.09001 * 109.68324 * 9.77030 * 24 23 21 39 39 H 1.08996 * 109.65543 * 292.56689 * 25 24 23 40 40 H 1.09004 * 109.48240 * 172.39936 * 25 24 23 41 41 H 1.08994 * 109.51309 * 302.66095 * 27 26 25 42 42 H 1.08994 * 109.55666 * 182.53134 * 27 26 25 43 43 H 1.08996 * 109.68021 * 350.23857 * 28 23 21 44 44 H 1.08998 * 109.67798 * 110.74987 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2178 0.0666 2.2850 6 8 1.9969 1.2605 2.2544 7 6 2.7102 -0.5621 3.5284 8 6 2.9595 -1.9389 3.5660 9 6 3.4251 -2.5334 4.7249 10 6 3.6388 -1.7799 5.8580 11 6 3.3887 -0.3948 5.8411 12 6 3.6078 0.3814 7.0029 13 1 3.8901 1.4200 6.9132 14 6 3.4588 -0.1962 8.2688 15 7 3.9905 0.3787 9.3169 16 14 2.5009 -1.7882 8.4620 17 1 3.4420 -2.9369 8.4487 18 1 1.7625 -1.7683 9.7502 19 1 1.5368 -1.9250 7.3409 20 6 2.9214 0.2126 4.6636 21 6 2.0324 -0.7103 -1.2305 22 8 2.6530 -1.7466 -1.1216 23 7 1.7919 -0.1940 -2.4520 24 6 1.0359 1.0586 -2.6095 25 6 1.8442 1.9944 -3.5228 26 8 2.1794 1.3001 -4.7268 27 6 3.0156 0.1574 -4.5299 28 6 2.2719 -0.8697 -3.6679 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.7906 -2.5396 2.6845 33 1 3.6184 -3.5959 4.7425 34 1 3.9989 -2.2522 6.7602 35 1 3.8875 -0.0219 10.1942 36 1 2.7273 1.2748 4.6402 37 1 0.0664 0.8480 -3.0608 38 1 0.8942 1.5268 -1.6354 39 1 2.7574 2.3039 -3.0146 40 1 1.2459 2.8731 -3.7638 41 1 3.9331 0.4602 -4.0253 42 1 3.2603 -0.2863 -5.4949 43 1 2.9488 -1.6792 -3.3951 44 1 1.4244 -1.2715 -4.2234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051525175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:32 Heat of formation + Delta-G solvation = -133.931147 kcal Electronic energy + Delta-G solvation = -28289.456527 eV Core-core repulsion = 24172.213830 eV Total energy + Delta-G solvation = -4117.242697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.00787 -39.98722 -38.58872 -37.67061 -36.10177 -35.27898 -33.75115 -32.72415 -31.38650 -30.63062 -30.10471 -28.31021 -25.57312 -25.05475 -24.62419 -23.55035 -22.05678 -20.78636 -20.43407 -19.72139 -18.35558 -17.37503 -17.23613 -16.77606 -16.40613 -16.13401 -15.89792 -15.69188 -15.60098 -15.14718 -14.99000 -14.70236 -14.26698 -13.95142 -13.75064 -13.54276 -13.12306 -12.82450 -12.80106 -12.69462 -12.52911 -12.21238 -12.10902 -11.86451 -11.76129 -11.66340 -11.17306 -11.12703 -10.85933 -10.77357 -10.63568 -10.61466 -10.19614 -9.98380 -9.83397 -9.71982 -9.28051 -9.01780 -8.00725 -7.82446 -7.03978 -4.59588 1.60518 2.11890 2.25666 2.47540 3.02726 3.04554 3.14285 3.18813 3.30240 3.32533 3.89737 4.00089 4.20569 4.39632 4.44667 4.56637 4.61904 4.62990 4.71765 4.78971 4.97044 5.02104 5.12796 5.21749 5.24534 5.29259 5.42983 5.43898 5.44881 5.81803 5.87805 5.93319 6.14870 6.27020 6.54896 6.58558 6.59693 6.60787 6.84906 6.90613 7.13365 7.35971 7.45529 7.67704 7.77910 7.84159 8.17448 8.22957 8.45793 8.66230 9.98164 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.002379 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.218610 B =11769.206337 C =12114.326638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 H 0.108 0.892 4 O -0.324 6.324 5 C 0.515 3.485 6 O -0.519 6.519 7 C -0.097 4.097 8 C -0.187 4.187 9 C -0.089 4.089 10 C -0.210 4.210 11 C 0.078 3.922 12 C -0.444 4.444 13 H 0.094 0.906 14 C 0.084 3.916 15 N -0.803 5.803 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.243 1.243 20 C -0.133 4.133 21 C 0.523 3.477 22 O -0.509 6.509 23 N -0.617 5.617 24 C 0.064 3.936 25 C 0.045 3.955 26 O -0.379 6.379 27 C 0.047 3.953 28 C 0.079 3.921 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.287 0.713 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 0.056 -22.551 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.126 0.874 4 O -0.240 6.240 5 C 0.362 3.638 6 O -0.409 6.409 7 C -0.098 4.098 8 C -0.207 4.207 9 C -0.108 4.108 10 C -0.229 4.229 11 C 0.075 3.925 12 C -0.472 4.472 13 H 0.112 0.888 14 C -0.136 4.136 15 N -0.426 5.426 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.166 1.166 20 C -0.152 4.152 21 C 0.310 3.690 22 O -0.382 6.382 23 N -0.354 5.354 24 C -0.059 4.059 25 C -0.032 4.032 26 O -0.297 6.297 27 C -0.030 4.030 28 C -0.043 4.043 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.220 -0.040 -22.391 23.239 hybrid contribution -0.315 -0.562 0.497 0.813 sum -6.535 -0.602 -21.894 22.857 Atomic orbital electron populations 1.22321 0.91954 1.04354 1.04265 1.22264 0.95990 0.97537 0.83194 0.87396 1.86765 1.77361 1.40885 1.18964 1.21963 0.73328 0.84962 0.83552 1.90742 1.49648 1.16237 1.84225 1.18710 1.06802 0.94687 0.89603 1.20687 1.08450 0.93057 0.98484 1.20604 0.98785 0.98242 0.93120 1.21292 1.08506 0.95202 0.97916 1.17635 0.90136 0.91683 0.93023 1.19469 1.39515 0.99629 0.88565 0.88789 1.26152 0.93404 0.98624 0.95394 1.69682 1.32969 1.39177 1.00822 0.86348 0.81092 0.80807 0.78327 1.19425 1.21535 1.16631 1.21261 1.02845 0.99150 0.91949 1.20282 0.79590 0.85344 0.83750 1.90750 1.38952 1.22786 1.85692 1.48005 1.56602 1.25323 1.05514 1.22802 0.95906 0.85037 1.02157 1.23105 0.99414 0.94590 0.86105 1.87972 1.69507 1.42025 1.30226 1.23024 0.92792 0.86364 1.00838 1.22322 1.00409 0.96544 0.85071 0.90047 0.90713 0.90091 0.86983 0.87822 0.87607 0.90259 0.86440 0.89738 0.88095 0.92196 0.87227 0.92366 0.87357 0.87798 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.14 37.16 0.34 -1.47 16 2 C 0.07 0.94 2.15 -27.88 -0.06 0.88 16 3 H 0.11 1.39 6.43 -51.93 -0.33 1.05 16 4 O -0.32 -5.83 8.66 -47.18 -0.41 -6.24 16 5 C 0.51 10.32 7.87 34.63 0.27 10.59 16 6 O -0.52 -10.69 15.59 -19.23 -0.30 -10.99 16 7 C -0.10 -2.13 5.87 -105.05 -0.62 -2.75 16 8 C -0.19 -3.94 9.62 -38.90 -0.37 -4.31 16 9 C -0.09 -1.88 10.01 -39.73 -0.40 -2.28 16 10 C -0.21 -4.90 7.17 -38.81 -0.28 -5.17 16 11 C 0.08 1.95 5.10 -106.88 -0.55 1.40 16 12 C -0.44 -11.73 9.57 -37.73 -0.36 -12.09 16 13 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 14 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 15 N -0.80 -20.89 13.93 55.55 0.77 -20.11 16 16 Si 0.91 20.08 24.52 -169.99 -4.17 15.92 16 17 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 18 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.24 -5.50 6.86 56.52 0.39 -5.11 16 20 C -0.13 -3.13 9.34 -38.43 -0.36 -3.49 16 21 C 0.52 7.07 7.13 -10.98 -0.08 6.99 16 22 O -0.51 -8.86 15.98 -14.06 -0.22 -9.08 16 23 N -0.62 -6.02 3.01 -171.99 -0.52 -6.53 16 24 C 0.06 0.43 5.13 -3.31 -0.02 0.41 16 25 C 0.05 0.29 7.00 37.53 0.26 0.55 16 26 O -0.38 -3.07 10.74 -35.23 -0.38 -3.45 16 27 C 0.05 0.33 6.99 37.33 0.26 0.59 16 28 C 0.08 0.65 6.64 -3.51 -0.02 0.63 16 29 H 0.08 0.58 5.44 -51.93 -0.28 0.30 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.11 2.19 7.59 -52.49 -0.40 1.79 16 33 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.11 2.43 4.72 -52.48 -0.25 2.18 16 35 H 0.29 6.73 8.30 -40.82 -0.34 6.40 16 36 H 0.12 2.75 7.64 -52.49 -0.40 2.34 16 37 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 38 H 0.10 0.61 4.89 -51.93 -0.25 0.36 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.98 7.08 -51.93 -0.37 0.61 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -31.35 360.53 -7.54 -38.89 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.68 Total: 3.64 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.07 Total: -7.46 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.26 Total: -26.65 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.31 Total: -29.76 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.17 Total: 15.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.35 -7.54 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.042 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds