Wall clock time and date at job start Tue Mar 31 2020 18:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 O 1.45193 * 109.47000 * 120.00494 * 2 1 3 5 5 C 1.34709 * 116.99719 * 270.00060 * 4 2 1 6 6 O 1.21457 * 120.00320 * 0.02562 * 5 4 2 7 7 C 1.47775 * 119.99851 * 180.02562 * 5 4 2 8 8 C 1.39970 * 120.02789 * 359.72101 * 7 5 4 9 9 C 1.38321 * 120.34789 * 179.76576 * 8 7 5 10 10 C 1.37751 * 120.41865 * 0.51420 * 9 8 7 11 11 C 1.40757 * 120.05416 * 359.74205 * 10 9 8 12 12 C 1.41434 * 120.17598 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00005 * 150.18049 * 12 11 10 14 14 C 1.39940 * 120.00445 * 330.18008 * 12 11 10 15 15 N 1.30826 * 120.00266 * 161.72817 * 14 12 11 16 16 Si 1.86801 * 119.99616 * 341.73096 * 14 12 11 17 17 H 1.48500 * 109.47152 * 95.41419 * 16 14 12 18 18 H 1.48498 * 109.46964 * 215.41258 * 16 14 12 19 19 H 1.48499 * 109.47116 * 335.40992 * 16 14 12 20 20 C 1.39051 * 120.03223 * 179.97438 * 7 5 4 21 21 C 1.50697 * 109.47186 * 240.00431 * 2 1 3 22 22 O 1.21286 * 120.00177 * 245.00375 * 21 2 1 23 23 N 1.34783 * 120.00027 * 64.99944 * 21 2 1 24 24 C 1.47148 * 120.97982 * 359.71624 * 23 21 2 25 25 C 1.53721 * 108.15717 * 129.43434 * 24 23 21 26 26 O 1.42964 * 109.14824 * 52.53971 * 25 24 23 27 27 C 1.42962 * 114.16407 * 297.28590 * 26 25 24 28 28 C 1.47154 * 120.98145 * 180.02562 * 23 21 2 29 29 H 1.09000 * 109.46966 * 59.99864 * 1 2 3 30 30 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47185 * 299.99827 * 1 2 3 32 32 H 1.08000 * 119.82452 * 359.97438 * 8 7 5 33 33 H 1.08004 * 119.78860 * 180.26210 * 9 8 7 34 34 H 1.08011 * 119.97647 * 179.76582 * 10 9 8 35 35 H 0.96993 * 119.99810 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.20181 * 359.95034 * 20 7 5 37 37 H 1.08998 * 109.68524 * 249.21144 * 24 23 21 38 38 H 1.09001 * 109.68324 * 9.77030 * 24 23 21 39 39 H 1.08996 * 109.65543 * 292.56689 * 25 24 23 40 40 H 1.09004 * 109.48240 * 172.39936 * 25 24 23 41 41 H 1.08994 * 109.51309 * 302.66095 * 27 26 25 42 42 H 1.08994 * 109.55666 * 182.53134 * 27 26 25 43 43 H 1.08996 * 109.68021 * 350.23857 * 28 23 21 44 44 H 1.08998 * 109.67798 * 110.74987 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2178 0.0666 2.2850 6 8 1.9969 1.2605 2.2544 7 6 2.7102 -0.5621 3.5284 8 6 2.9595 -1.9389 3.5660 9 6 3.4251 -2.5334 4.7249 10 6 3.6388 -1.7799 5.8580 11 6 3.3887 -0.3948 5.8411 12 6 3.6078 0.3814 7.0029 13 1 3.8901 1.4200 6.9132 14 6 3.4588 -0.1962 8.2688 15 7 3.9905 0.3787 9.3169 16 14 2.5009 -1.7882 8.4620 17 1 3.4420 -2.9369 8.4487 18 1 1.7625 -1.7683 9.7502 19 1 1.5368 -1.9250 7.3409 20 6 2.9214 0.2126 4.6636 21 6 2.0324 -0.7103 -1.2305 22 8 2.6530 -1.7466 -1.1216 23 7 1.7919 -0.1940 -2.4520 24 6 1.0359 1.0586 -2.6095 25 6 1.8442 1.9944 -3.5228 26 8 2.1794 1.3001 -4.7268 27 6 3.0156 0.1574 -4.5299 28 6 2.2719 -0.8697 -3.6679 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.7906 -2.5396 2.6845 33 1 3.6184 -3.5959 4.7425 34 1 3.9989 -2.2522 6.7602 35 1 3.8875 -0.0219 10.1942 36 1 2.7273 1.2748 4.6402 37 1 0.0664 0.8480 -3.0608 38 1 0.8942 1.5268 -1.6354 39 1 2.7574 2.3039 -3.0146 40 1 1.2459 2.8731 -3.7638 41 1 3.9331 0.4602 -4.0253 42 1 3.2603 -0.2863 -5.4949 43 1 2.9488 -1.6792 -3.3951 44 1 1.4244 -1.2715 -4.2234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051525175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:31 Heat of formation + Delta-G solvation = -153.076008 kcal Electronic energy + Delta-G solvation = -28290.286710 eV Core-core repulsion = 24172.213830 eV Total energy + Delta-G solvation = -4118.072880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.12638 -41.20082 -39.63173 -39.23271 -37.56100 -36.11936 -35.62091 -33.67077 -32.60863 -32.04424 -31.73221 -29.03045 -27.31610 -26.27777 -25.39238 -24.81554 -23.02712 -22.53819 -21.92734 -20.62350 -19.92580 -18.63410 -18.46227 -17.96186 -17.61568 -17.28544 -17.11340 -16.72341 -16.53470 -16.41434 -16.14223 -15.86604 -15.61647 -15.33792 -14.84953 -14.71233 -14.61820 -14.36575 -14.02779 -13.90326 -13.64029 -13.45559 -13.31530 -12.92166 -12.87902 -12.80205 -12.69614 -12.40198 -12.38353 -12.05062 -11.86385 -11.76468 -11.71325 -11.53419 -11.30534 -11.09936 -10.90346 -9.77934 -9.76712 -9.67900 -8.93713 -6.57842 -0.11927 0.67811 1.04793 1.23728 1.26008 1.40693 1.45415 1.59345 1.93206 2.10497 2.55650 2.81447 3.06849 3.36017 3.55778 3.65087 3.70782 3.72873 3.88722 4.05739 4.07244 4.19556 4.21571 4.38228 4.39172 4.40859 4.54430 4.56022 4.61531 4.70720 4.79262 4.80957 4.82409 4.86817 4.95780 5.03815 5.12329 5.24180 5.33719 5.57656 5.65496 5.78389 5.98406 6.03243 6.04986 6.24820 6.56713 6.61117 6.71182 6.81586 8.14586 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.002379 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.218610 B =11769.206337 C =12114.326638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.060 3.940 3 H 0.115 0.885 4 O -0.332 6.332 5 C 0.521 3.479 6 O -0.529 6.529 7 C -0.105 4.105 8 C -0.169 4.169 9 C -0.086 4.086 10 C -0.213 4.213 11 C 0.064 3.936 12 C -0.482 4.482 13 H 0.058 0.942 14 C 0.048 3.952 15 N -0.843 5.843 16 Si 0.961 3.039 17 H -0.248 1.248 18 H -0.275 1.275 19 H -0.251 1.251 20 C -0.151 4.151 21 C 0.523 3.477 22 O -0.558 6.558 23 N -0.608 5.608 24 C 0.057 3.943 25 C 0.043 3.957 26 O -0.390 6.390 27 C 0.051 3.949 28 C 0.076 3.924 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.296 0.704 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.136 0.864 41 H 0.049 0.951 42 H 0.131 0.869 43 H 0.089 0.911 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.047 -1.574 -25.102 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.002 3.998 3 H 0.133 0.867 4 O -0.248 6.248 5 C 0.368 3.632 6 O -0.420 6.420 7 C -0.106 4.106 8 C -0.188 4.188 9 C -0.104 4.104 10 C -0.232 4.232 11 C 0.062 3.938 12 C -0.511 4.511 13 H 0.076 0.924 14 C -0.167 4.167 15 N -0.469 5.469 16 Si 0.783 3.217 17 H -0.173 1.173 18 H -0.202 1.202 19 H -0.175 1.175 20 C -0.171 4.171 21 C 0.310 3.690 22 O -0.435 6.435 23 N -0.343 5.343 24 C -0.064 4.064 25 C -0.034 4.034 26 O -0.308 6.308 27 C -0.026 4.026 28 C -0.046 4.046 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.070 0.930 40 H 0.154 0.846 41 H 0.068 0.932 42 H 0.149 0.851 43 H 0.107 0.893 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.777 -1.637 -24.991 26.224 hybrid contribution 0.146 -0.015 0.976 0.987 sum -7.631 -1.652 -24.015 25.253 Atomic orbital electron populations 1.22347 0.89373 1.04736 1.05767 1.22694 0.98022 0.97458 0.81591 0.86701 1.86697 1.77251 1.41220 1.19592 1.21536 0.73202 0.84672 0.83784 1.90730 1.50046 1.16661 1.84593 1.18926 1.06304 0.95292 0.90087 1.21054 1.05907 0.92633 0.99203 1.21029 0.97301 1.00181 0.91886 1.21475 1.08133 0.94483 0.99154 1.17734 0.90564 0.92743 0.92791 1.19422 1.42780 0.98566 0.90333 0.92406 1.26844 0.93700 1.01555 0.94604 1.69706 1.34541 1.41059 1.01557 0.85556 0.79962 0.77801 0.78386 1.17296 1.20169 1.17461 1.21217 1.04121 0.99010 0.92730 1.20267 0.79219 0.84811 0.84670 1.90726 1.41428 1.24910 1.86462 1.48096 1.55630 1.25880 1.04726 1.23107 0.96603 0.83699 1.03023 1.23259 0.99507 0.95132 0.85524 1.87966 1.69562 1.42214 1.31079 1.23069 0.92042 0.85888 1.01619 1.22480 1.00979 0.96594 0.84562 0.86290 0.90874 0.90828 0.84790 0.83683 0.87050 0.89304 0.87582 0.87332 0.87332 0.92954 0.84646 0.93239 0.85097 0.89305 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.14 71.98 0.66 -2.42 16 2 C 0.06 1.55 2.15 29.85 0.06 1.62 16 3 H 0.12 2.79 6.43 -2.39 -0.02 2.77 16 4 O -0.33 -11.56 8.66 -49.81 -0.43 -11.99 16 5 C 0.52 20.58 7.87 70.34 0.55 21.13 16 6 O -0.53 -21.74 15.59 19.97 0.31 -21.43 16 7 C -0.10 -4.55 5.87 -20.14 -0.12 -4.67 16 8 C -0.17 -6.69 9.62 22.71 0.22 -6.47 16 9 C -0.09 -3.37 10.01 22.17 0.22 -3.15 16 10 C -0.21 -9.68 7.17 22.77 0.16 -9.51 16 11 C 0.06 3.27 5.10 -21.32 -0.11 3.16 16 12 C -0.48 -26.85 9.57 23.47 0.22 -26.62 16 13 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 14 C 0.05 2.54 5.40 85.25 0.46 3.00 16 15 N -0.84 -45.38 13.93 21.83 0.30 -45.08 16 16 Si 0.96 40.90 24.52 68.60 1.68 42.58 16 17 H -0.25 -9.71 6.71 99.48 0.67 -9.04 16 18 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.25 -10.90 6.86 99.48 0.68 -10.22 16 20 C -0.15 -7.34 9.34 23.02 0.21 -7.12 16 21 C 0.52 13.45 7.13 87.66 0.63 14.07 16 22 O -0.56 -19.19 15.98 15.70 0.25 -18.94 16 23 N -0.61 -10.58 3.01 -816.45 -2.46 -13.04 16 24 C 0.06 0.58 5.13 86.50 0.44 1.03 16 25 C 0.04 0.43 7.00 72.22 0.51 0.93 16 26 O -0.39 -5.26 10.74 -148.98 -1.60 -6.86 16 27 C 0.05 0.61 6.99 72.09 0.50 1.11 16 28 C 0.08 1.11 6.64 86.37 0.57 1.68 16 29 H 0.12 1.27 5.44 -2.39 -0.01 1.25 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 4.78 7.59 -2.91 -0.02 4.76 16 33 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 34 H 0.11 4.90 4.72 -2.91 -0.01 4.89 16 35 H 0.30 14.22 8.30 -92.71 -0.77 13.45 16 36 H 0.11 5.26 7.64 -2.91 -0.02 5.23 16 37 H 0.11 0.68 8.11 -2.39 -0.02 0.66 16 38 H 0.11 0.95 4.89 -2.39 -0.01 0.94 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.62 7.08 -2.39 -0.02 1.60 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.53 360.53 4.23 -66.30 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.97 Total: 20.69 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 5.20 Total: -12.23 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -2.16 Total: -58.12 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -1.47 Total: -59.21 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.68 Total: 42.58 kcal Total: -70.53 4.23 -66.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.781 kcal (2) G-P(sol) polarization free energy of solvation -70.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds