Wall clock time and date at job start Tue Mar 31 2020 18:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47589 * 2 1 4 4 C 1.50700 * 109.46604 * 120.00068 * 2 1 3 5 5 O 1.21283 * 120.00166 * 119.99943 * 4 2 1 6 6 N 1.34775 * 120.00251 * 299.99970 * 4 2 1 7 7 C 1.46503 * 119.99597 * 359.97438 * 6 4 2 8 8 C 1.46497 * 120.00359 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.47329 * 89.99770 * 8 6 4 10 10 H 1.08006 * 119.99975 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00360 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99744 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00541 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47094 * 89.99522 * 13 11 9 15 15 H 1.48499 * 109.47419 * 209.99924 * 13 11 9 16 16 H 1.48500 * 109.46824 * 330.00182 * 13 11 9 17 17 N 1.46502 * 109.47052 * 239.99907 * 2 1 3 18 18 N 1.28732 * 125.34140 * 300.02210 * 17 2 1 19 19 N 1.28989 * 108.94461 * 180.02562 * 18 17 2 20 20 C 1.34049 * 107.26765 * 0.02562 * 19 18 17 21 21 C 1.48460 * 126.67693 * 179.97438 * 20 19 18 22 22 C 1.39335 * 120.10194 * 0.02750 * 21 20 19 23 23 C 1.38007 * 119.93075 * 179.97438 * 22 21 20 24 24 C 1.38305 * 120.14737 * 359.97396 * 23 22 21 25 25 C 1.38506 * 120.20801 * 0.04438 * 24 23 22 26 26 F 1.35103 * 119.96544 * 179.97438 * 25 24 23 27 27 C 1.38282 * 120.06936 * 359.95651 * 25 24 23 28 28 N 1.28870 * 125.34054 * 120.32281 * 17 2 1 29 29 H 1.09000 * 109.47395 * 300.00185 * 1 2 3 30 30 H 1.09004 * 109.46845 * 60.00480 * 1 2 3 31 31 H 1.09003 * 109.47394 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46799 * 90.00889 * 7 6 4 33 33 H 1.09004 * 109.46987 * 209.99796 * 7 6 4 34 34 H 1.08990 * 109.47401 * 330.00248 * 7 6 4 35 35 H 1.08996 * 109.47034 * 209.99920 * 8 6 4 36 36 H 1.09002 * 109.46771 * 329.99730 * 8 6 4 37 37 H 0.97001 * 120.00439 * 179.97438 * 12 11 9 38 38 H 1.07994 * 120.03040 * 359.69711 * 22 21 20 39 39 H 1.08001 * 119.92827 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.89258 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.07141 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7294 -1.6966 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 0.8648 0.9415 2.5889 8 6 2.1952 -0.9403 3.6508 9 6 3.5226 -0.3564 4.0608 10 1 3.9589 0.4482 3.4874 11 6 4.1807 -0.8499 5.1672 12 7 3.6497 -1.8300 5.8652 13 14 5.8264 -0.1266 5.6751 14 1 5.6027 0.9985 6.6183 15 1 6.6438 -1.1738 6.3387 16 1 6.5408 0.3708 4.4720 17 7 2.0183 -0.6906 -1.1962 18 7 1.7712 -1.9166 -1.5012 19 7 2.3559 -2.1967 -2.6163 20 6 2.9957 -1.0898 -3.0192 21 6 3.8079 -0.9341 -4.2521 22 6 3.9635 -2.0077 -5.1267 23 6 4.7188 -1.8589 -6.2720 24 6 5.3213 -0.6463 -6.5541 25 6 5.1709 0.4246 -5.6887 26 9 5.7620 1.6067 -5.9688 27 6 4.4160 0.2853 -4.5386 28 7 2.7672 -0.1678 -2.1053 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.1833 0.6440 2.6221 33 1 1.1226 1.4667 3.5087 34 1 1.0288 1.6002 1.7362 35 1 1.4773 -0.8151 4.4613 36 1 2.3166 -2.0016 3.4337 37 1 4.1128 -2.1775 6.6435 38 1 3.4972 -2.9564 -4.9061 39 1 4.8397 -2.6911 -6.9497 40 1 5.9112 -0.5343 -7.4519 41 1 4.2990 1.1202 -3.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052660036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:08 Heat of formation + Delta-G solvation = 88.561096 kcal Electronic energy + Delta-G solvation = -27630.854276 eV Core-core repulsion = 23464.384764 eV Total energy + Delta-G solvation = -4166.469512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.14055 -44.24771 -39.67634 -39.17787 -35.53137 -35.25405 -33.55340 -32.96427 -32.08648 -30.94857 -30.09592 -27.87323 -26.59016 -25.41216 -24.74543 -23.88714 -22.90127 -21.89620 -21.72906 -19.36014 -18.08201 -17.36428 -17.23348 -16.64405 -16.48935 -16.41155 -16.26674 -15.83265 -15.46193 -15.16585 -14.77471 -14.23164 -14.06727 -13.86511 -13.72411 -13.38154 -13.32867 -12.88782 -12.75190 -12.44459 -12.41103 -12.24023 -12.07635 -11.74026 -11.69751 -11.49815 -11.30387 -11.01405 -11.00988 -10.92092 -10.78407 -10.68353 -10.27684 -9.78499 -9.32344 -9.18084 -8.85451 -8.54236 -7.94913 -6.15621 -4.21427 0.44848 0.87934 1.35376 1.75738 2.31447 2.91022 3.23606 3.31298 3.34446 3.39698 3.47323 3.50542 3.94980 4.22234 4.34217 4.44612 4.47980 4.56008 4.61393 4.76754 4.85292 5.04744 5.12866 5.18287 5.19670 5.29958 5.35095 5.53844 5.61485 5.64750 5.72711 5.75943 5.84614 5.98434 6.03348 6.07642 6.15937 6.50788 6.78503 7.21416 7.29606 7.78817 8.02663 8.07760 8.39908 8.57049 8.82935 9.44222 10.92612 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.002763 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.402909 B =10129.773557 C =11088.731958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 H 0.144 0.856 4 C 0.500 3.500 5 O -0.513 6.513 6 N -0.588 5.588 7 C 0.071 3.929 8 C 0.247 3.753 9 C -0.533 4.533 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.113 5.113 18 N -0.022 5.022 19 N -0.277 5.277 20 C 0.195 3.805 21 C 0.028 3.972 22 C -0.090 4.090 23 C -0.092 4.092 24 C -0.141 4.141 25 C 0.097 3.903 26 F -0.137 7.137 27 C -0.120 4.120 28 N -0.297 5.297 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.265 0.735 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 6.234 -21.029 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 H 0.161 0.839 4 C 0.282 3.718 5 O -0.387 6.387 6 N -0.321 5.321 7 C -0.072 4.072 8 C 0.128 3.872 9 C -0.572 4.572 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.024 5.024 18 N -0.015 5.015 19 N -0.149 5.149 20 C -0.084 4.084 21 C 0.025 3.975 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.161 4.161 25 C 0.078 3.922 26 F -0.115 7.115 27 C -0.141 4.141 28 N -0.147 5.147 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.286 5.339 -20.343 21.686 hybrid contribution 1.417 1.008 0.188 1.749 sum -3.869 6.347 -20.155 21.482 Atomic orbital electron populations 1.22441 0.89394 1.05736 1.05366 1.21933 0.97721 0.97646 0.79755 0.83879 1.19735 0.82357 0.85698 0.84055 1.90807 1.36812 1.25696 1.85428 1.48071 1.49356 1.28215 1.06442 1.21966 0.94158 0.87848 1.03271 1.19420 0.94539 0.93789 0.79425 1.21379 1.04853 1.19422 1.11532 0.92404 1.24927 0.98018 0.94835 0.96167 1.69920 1.39093 1.25754 1.18274 0.86477 0.83450 0.78755 0.78659 1.20483 1.20951 1.19891 1.49617 1.29312 1.07068 1.16411 1.78985 1.16816 0.97854 1.07798 1.76029 1.11045 1.23049 1.04733 1.23345 1.01266 0.87317 0.96518 1.16972 0.96492 0.94062 0.89979 1.21309 0.97848 0.98745 0.93112 1.20958 0.96141 0.96987 0.96874 1.21302 1.01959 0.92605 1.00229 1.17450 0.97043 0.82077 0.95666 1.91522 1.81899 1.44621 1.93496 1.21144 0.97619 0.98463 0.96857 1.74804 1.12605 1.26946 1.00297 0.87310 0.90571 0.89817 0.92551 0.89830 0.92256 0.94273 0.93512 0.92519 0.83807 0.84121 0.84337 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.01 37.16 0.33 -1.42 16 2 C 0.13 1.93 2.84 -69.08 -0.20 1.74 16 3 H 0.14 1.67 7.40 -51.93 -0.38 1.29 16 4 C 0.50 9.84 7.10 -10.99 -0.08 9.76 16 5 O -0.51 -12.88 15.43 5.56 0.09 -12.79 16 6 N -0.59 -11.30 2.86 -182.96 -0.52 -11.82 16 7 C 0.07 0.91 8.80 59.85 0.53 1.44 16 8 C 0.25 6.10 5.16 -5.20 -0.03 6.08 16 9 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 10 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 13 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 N -0.11 -1.90 3.43 -5.90 -0.02 -1.92 16 18 N -0.02 -0.40 12.27 60.35 0.74 0.34 16 19 N -0.28 -4.81 12.23 32.16 0.39 -4.42 16 20 C 0.20 3.07 7.94 -156.30 -1.24 1.83 16 21 C 0.03 0.36 5.87 -104.90 -0.62 -0.26 16 22 C -0.09 -0.91 9.70 -39.26 -0.38 -1.29 16 23 C -0.09 -0.71 10.03 -39.64 -0.40 -1.10 16 24 C -0.14 -1.15 10.02 -39.46 -0.40 -1.55 16 25 C 0.10 1.00 7.29 -39.47 -0.29 0.71 16 26 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 27 C -0.12 -1.38 9.68 -39.19 -0.38 -1.76 16 28 N -0.30 -4.84 11.85 32.17 0.38 -4.46 16 29 H 0.11 0.87 4.53 -51.93 -0.24 0.64 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.57 6.95 -51.93 -0.36 0.21 16 33 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 34 H 0.06 0.56 6.01 -51.93 -0.31 0.25 16 35 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.14 1.38 7.89 -52.49 -0.41 0.97 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.15 1.66 7.88 -52.49 -0.41 1.25 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -35.29 360.52 -5.89 -41.18 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.58 Total: -2.32 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -3.56 Total: 0.93 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 1.71 Total: -47.47 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.29 -5.89 -41.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052660036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.740 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds