Wall clock time and date at job start Tue Mar 31 2020 18:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47589 * 2 1 4 4 C 1.50700 * 109.46604 * 120.00068 * 2 1 3 5 5 O 1.21283 * 120.00166 * 119.99943 * 4 2 1 6 6 N 1.34775 * 120.00251 * 299.99970 * 4 2 1 7 7 C 1.46503 * 119.99597 * 359.97438 * 6 4 2 8 8 C 1.46497 * 120.00359 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.47329 * 89.99770 * 8 6 4 10 10 H 1.08006 * 119.99975 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00360 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99744 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00541 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47094 * 89.99522 * 13 11 9 15 15 H 1.48499 * 109.47419 * 209.99924 * 13 11 9 16 16 H 1.48500 * 109.46824 * 330.00182 * 13 11 9 17 17 N 1.46502 * 109.47052 * 239.99907 * 2 1 3 18 18 N 1.28732 * 125.34140 * 300.02210 * 17 2 1 19 19 N 1.28989 * 108.94461 * 180.02562 * 18 17 2 20 20 C 1.34049 * 107.26765 * 0.02562 * 19 18 17 21 21 C 1.48460 * 126.67693 * 179.97438 * 20 19 18 22 22 C 1.39335 * 120.10194 * 0.02750 * 21 20 19 23 23 C 1.38007 * 119.93075 * 179.97438 * 22 21 20 24 24 C 1.38305 * 120.14737 * 359.97396 * 23 22 21 25 25 C 1.38506 * 120.20801 * 0.04438 * 24 23 22 26 26 F 1.35103 * 119.96544 * 179.97438 * 25 24 23 27 27 C 1.38282 * 120.06936 * 359.95651 * 25 24 23 28 28 N 1.28870 * 125.34054 * 120.32281 * 17 2 1 29 29 H 1.09000 * 109.47395 * 300.00185 * 1 2 3 30 30 H 1.09004 * 109.46845 * 60.00480 * 1 2 3 31 31 H 1.09003 * 109.47394 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46799 * 90.00889 * 7 6 4 33 33 H 1.09004 * 109.46987 * 209.99796 * 7 6 4 34 34 H 1.08990 * 109.47401 * 330.00248 * 7 6 4 35 35 H 1.08996 * 109.47034 * 209.99920 * 8 6 4 36 36 H 1.09002 * 109.46771 * 329.99730 * 8 6 4 37 37 H 0.97001 * 120.00439 * 179.97438 * 12 11 9 38 38 H 1.07994 * 120.03040 * 359.69711 * 22 21 20 39 39 H 1.08001 * 119.92827 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.89258 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.07141 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7294 -1.6966 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 0.8648 0.9415 2.5889 8 6 2.1952 -0.9403 3.6508 9 6 3.5226 -0.3564 4.0608 10 1 3.9589 0.4482 3.4874 11 6 4.1807 -0.8499 5.1672 12 7 3.6497 -1.8300 5.8652 13 14 5.8264 -0.1266 5.6751 14 1 5.6027 0.9985 6.6183 15 1 6.6438 -1.1738 6.3387 16 1 6.5408 0.3708 4.4720 17 7 2.0183 -0.6906 -1.1962 18 7 1.7712 -1.9166 -1.5012 19 7 2.3559 -2.1967 -2.6163 20 6 2.9957 -1.0898 -3.0192 21 6 3.8079 -0.9341 -4.2521 22 6 3.9635 -2.0077 -5.1267 23 6 4.7188 -1.8589 -6.2720 24 6 5.3213 -0.6463 -6.5541 25 6 5.1709 0.4246 -5.6887 26 9 5.7620 1.6067 -5.9688 27 6 4.4160 0.2853 -4.5386 28 7 2.7672 -0.1678 -2.1053 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.1833 0.6440 2.6221 33 1 1.1226 1.4667 3.5087 34 1 1.0288 1.6002 1.7362 35 1 1.4773 -0.8151 4.4613 36 1 2.3166 -2.0016 3.4337 37 1 4.1128 -2.1775 6.6435 38 1 3.4972 -2.9564 -4.9061 39 1 4.8397 -2.6911 -6.9497 40 1 5.9112 -0.5343 -7.4519 41 1 4.2990 1.1202 -3.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052660036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:07 Heat of formation + Delta-G solvation = 64.699218 kcal Electronic energy + Delta-G solvation = -27631.889005 eV Core-core repulsion = 23464.384764 eV Total energy + Delta-G solvation = -4167.504241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.94398 -45.49015 -41.15698 -39.99398 -36.92803 -36.76731 -34.89077 -34.69965 -33.29006 -31.75595 -31.11184 -29.63314 -27.87205 -26.59406 -25.77135 -25.57142 -23.98058 -23.00153 -22.85899 -20.76591 -19.08650 -18.83259 -18.58378 -18.39567 -17.61792 -17.25952 -17.18339 -17.08290 -16.64229 -16.56539 -16.11317 -15.77087 -15.08169 -14.93494 -14.76037 -14.68276 -14.28741 -14.21895 -13.85523 -13.72340 -13.59367 -13.46392 -13.39661 -13.03049 -12.89209 -12.78077 -12.68211 -12.51955 -12.38169 -12.29826 -12.22873 -12.10380 -11.85426 -11.76843 -10.85320 -10.68609 -10.00778 -9.71773 -9.59978 -8.28387 -6.42728 -0.44777 0.09241 0.12273 0.60121 1.23477 1.32715 1.36132 1.42469 1.47310 2.02005 2.34648 2.46344 2.59877 2.93335 3.02543 3.24334 3.35310 3.43775 3.55244 3.85494 3.91338 4.06932 4.23986 4.28097 4.30427 4.40238 4.42092 4.56676 4.67599 4.73590 4.83333 4.88292 4.96196 5.00291 5.05138 5.08380 5.17025 5.24978 5.33702 5.44318 5.71509 5.78099 5.97825 6.45925 6.65965 7.06352 7.13535 7.29074 8.79044 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.002763 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.402909 B =10129.773557 C =11088.731958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.177 0.823 4 C 0.492 3.508 5 O -0.581 6.581 6 N -0.590 5.590 7 C 0.058 3.942 8 C 0.260 3.740 9 C -0.546 4.546 10 H 0.054 0.946 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.965 3.035 14 H -0.259 1.259 15 H -0.283 1.283 16 H -0.277 1.277 17 N -0.115 5.115 18 N -0.050 5.050 19 N -0.294 5.294 20 C 0.197 3.803 21 C -0.001 4.001 22 C -0.092 4.092 23 C -0.078 4.078 24 C -0.125 4.125 25 C 0.085 3.915 26 F -0.142 7.142 27 C -0.127 4.127 28 N -0.306 5.306 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.038 0.962 36 H -0.003 1.003 37 H 0.268 0.732 38 H 0.145 0.855 39 H 0.180 0.820 40 H 0.171 0.829 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 8.200 -23.149 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.194 0.806 4 C 0.276 3.724 5 O -0.461 6.461 6 N -0.321 5.321 7 C -0.082 4.082 8 C 0.139 3.861 9 C -0.585 4.585 10 H 0.072 0.928 11 C -0.190 4.190 12 N -0.565 5.565 13 Si 0.789 3.211 14 H -0.183 1.183 15 H -0.208 1.208 16 H -0.202 1.202 17 N -0.027 5.027 18 N -0.043 5.043 19 N -0.165 5.165 20 C -0.082 4.082 21 C -0.004 4.004 22 C -0.112 4.112 23 C -0.095 4.095 24 C -0.144 4.144 25 C 0.066 3.934 26 F -0.121 7.121 27 C -0.149 4.149 28 N -0.156 5.156 29 H 0.155 0.845 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.056 0.944 36 H 0.015 0.985 37 H 0.077 0.923 38 H 0.163 0.837 39 H 0.197 0.803 40 H 0.189 0.811 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.242 7.360 -22.463 24.213 hybrid contribution 1.404 0.385 0.764 1.644 sum -3.838 7.745 -21.700 23.358 Atomic orbital electron populations 1.22538 0.85840 1.05629 1.08098 1.22170 1.00219 0.97567 0.76430 0.80588 1.20617 0.81182 0.85047 0.85524 1.90768 1.39885 1.28813 1.86633 1.48003 1.49612 1.29550 1.04917 1.22425 0.94881 0.85969 1.04969 1.18859 0.94051 0.91644 0.81497 1.21683 1.05996 1.19283 1.11489 0.92772 1.25813 1.01642 0.95192 0.96313 1.70034 1.40692 1.26988 1.18818 0.85461 0.78844 0.78461 0.78327 1.18344 1.20813 1.20185 1.49872 1.29190 1.06787 1.16852 1.78926 1.17995 0.98896 1.08476 1.75972 1.11814 1.23868 1.04820 1.23970 1.00600 0.86527 0.97132 1.17106 0.97960 0.95496 0.89871 1.21497 0.98064 0.98082 0.93558 1.21363 0.94181 0.97939 0.96038 1.21705 1.00762 0.91596 1.00313 1.17607 0.97300 0.82635 0.95869 1.91509 1.81986 1.45098 1.93485 1.21097 0.98227 0.97982 0.97550 1.74782 1.12916 1.27248 1.00615 0.84482 0.87726 0.91413 0.88995 0.90433 0.88035 0.94400 0.98459 0.92310 0.83707 0.80254 0.81142 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.01 71.98 0.65 -2.28 16 2 C 0.14 3.85 2.84 44.25 0.13 3.98 16 3 H 0.18 3.61 7.40 -2.39 -0.02 3.60 16 4 C 0.49 19.70 7.10 87.66 0.62 20.32 16 5 O -0.58 -30.86 15.43 -3.04 -0.05 -30.91 16 6 N -0.59 -22.72 2.86 -851.14 -2.43 -25.15 16 7 C 0.06 1.35 8.80 127.77 1.12 2.48 16 8 C 0.26 13.41 5.16 85.63 0.44 13.85 16 9 C -0.55 -30.62 9.39 25.60 0.24 -30.38 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.56 5.46 84.65 0.46 1.02 16 12 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 13 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 17 N -0.11 -3.89 3.43 -172.58 -0.59 -4.48 16 18 N -0.05 -1.91 12.27 37.02 0.45 -1.45 16 19 N -0.29 -10.54 12.23 -52.18 -0.64 -11.18 16 20 C 0.20 6.34 7.94 137.38 1.09 7.43 16 21 C 0.00 -0.02 5.87 -20.05 -0.12 -0.14 16 22 C -0.09 -1.75 9.70 22.48 0.22 -1.53 16 23 C -0.08 -0.94 10.03 22.23 0.22 -0.72 16 24 C -0.12 -1.61 10.02 22.35 0.22 -1.39 16 25 C 0.09 1.62 7.29 22.34 0.16 1.78 16 26 F -0.14 -2.90 17.27 44.97 0.78 -2.12 16 27 C -0.13 -2.90 9.68 22.52 0.22 -2.69 16 28 N -0.31 -10.05 11.85 -52.13 -0.62 -10.67 16 29 H 0.14 1.63 4.53 -2.39 -0.01 1.62 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.52 6.95 -2.39 -0.02 1.50 16 33 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.10 1.50 6.01 -2.39 -0.01 1.49 16 35 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 36 H 0.00 -0.17 7.42 -2.39 -0.02 -0.18 16 37 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.15 2.69 7.89 -2.91 -0.02 2.66 16 39 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 41 H 0.14 3.22 7.88 -2.91 -0.02 3.19 16 Total: -1.00 -83.58 360.52 5.98 -77.60 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.08 Total: 5.03 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 5.68 Total: 11.74 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.54 Total: -107.90 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -83.58 5.98 -77.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052660036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.299 kcal (2) G-P(sol) polarization free energy of solvation -83.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds