Wall clock time and date at job start Tue Mar 31 2020 17:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 S 1.81405 * 109.47063 * 180.02562 * 3 2 1 5 5 O 1.42097 * 110.54119 * 291.62598 * 4 3 2 6 6 O 1.42096 * 110.54078 * 68.37999 * 4 3 2 7 7 N 1.65601 * 104.44602 * 180.02562 * 4 3 2 8 8 C 1.46919 * 120.63240 * 92.79954 * 7 4 3 9 9 C 1.52764 * 109.00892 * 233.57850 * 8 7 4 10 10 C 1.53039 * 109.38514 * 305.59181 * 9 8 7 11 11 C 1.53042 * 109.53988 * 61.23808 * 10 9 8 12 12 C 1.46936 * 120.62574 * 273.07625 * 7 4 3 13 13 H 1.09000 * 109.58580 * 246.15486 * 12 7 4 14 14 C 1.50697 * 109.58789 * 6.58448 * 12 7 4 15 15 O 1.20828 * 119.99956 * 52.85574 * 14 12 7 16 16 O 1.34223 * 119.99930 * 232.85231 * 14 12 7 17 17 C 1.45205 * 116.99855 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.46958 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.46962 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00484 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99919 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00196 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00208 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46929 * 89.99960 * 23 21 19 25 25 H 1.48496 * 109.47375 * 210.00097 * 23 21 19 26 26 H 1.48494 * 109.46746 * 330.00068 * 23 21 19 27 27 H 1.08996 * 109.47274 * 59.99970 * 1 2 3 28 28 H 1.09002 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47460 * 299.99776 * 1 2 3 30 30 H 1.08999 * 109.47735 * 120.00258 * 2 1 3 31 31 H 1.09005 * 109.47182 * 240.00797 * 2 1 3 32 32 H 1.08996 * 109.47115 * 300.00127 * 3 2 1 33 33 H 1.09005 * 109.46486 * 60.00371 * 3 2 1 34 34 H 1.08997 * 109.58918 * 353.41863 * 8 7 4 35 35 H 1.09011 * 109.58408 * 113.84488 * 8 7 4 36 36 H 1.08997 * 109.56459 * 185.55218 * 9 8 7 37 37 H 1.08998 * 109.37994 * 65.51699 * 9 8 7 38 38 H 1.09005 * 109.45714 * 301.21669 * 10 9 8 39 39 H 1.09002 * 109.44860 * 181.25277 * 10 9 8 40 40 H 1.08998 * 109.49849 * 178.68407 * 11 10 9 41 41 H 1.08999 * 109.49842 * 58.58154 * 11 10 9 42 42 H 1.09003 * 109.47157 * 299.99880 * 17 16 14 43 43 H 1.09003 * 109.47105 * 59.99904 * 17 16 14 44 44 H 1.08993 * 109.47657 * 300.00343 * 18 17 16 45 45 H 1.09003 * 109.47134 * 60.00114 * 18 17 16 46 46 H 0.96998 * 120.00088 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3531 0.9520 1.2359 6 8 4.3520 0.9525 -1.2381 7 7 4.2671 3.0462 0.0000 8 6 4.5142 3.7550 1.2630 9 6 3.6370 5.0047 1.3121 10 6 3.8836 5.8479 0.0590 11 6 3.5063 5.0394 -1.1844 12 6 4.3876 3.7887 -1.2622 13 1 5.4260 4.0824 -1.4156 14 6 3.9312 2.9194 -2.4053 15 8 2.8470 2.3876 -2.3645 16 8 4.7291 2.7358 -3.4690 17 6 4.2242 1.8864 -4.5330 18 6 5.2645 1.7971 -5.6513 19 6 4.7408 0.9151 -6.7552 20 1 3.7635 0.4636 -6.6682 21 6 5.5093 0.6843 -7.8764 22 7 6.6992 1.2344 -7.9828 23 14 4.8599 -0.4085 -9.2453 24 1 4.1170 0.4193 -10.2292 25 1 5.9969 -1.0815 -9.9230 26 1 3.9495 -1.4319 -8.6718 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 4.2676 3.1039 2.1017 35 1 5.5632 4.0459 1.3196 36 1 3.8837 5.5892 2.1984 37 1 2.5885 4.7093 1.3513 38 1 4.9372 6.1226 0.0077 39 1 3.2746 6.7509 0.1036 40 1 3.6601 5.6487 -2.0750 41 1 2.4592 4.7432 -1.1220 42 1 4.0270 0.8893 -4.1392 43 1 3.3011 2.3099 -4.9289 44 1 5.4614 2.7942 -6.0449 45 1 6.1878 1.3739 -5.2556 46 1 7.2397 1.0723 -8.7717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061802142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:08 Heat of formation + Delta-G solvation = -168.112453 kcal Electronic energy + Delta-G solvation = -28686.509612 eV Core-core repulsion = 24703.228653 eV Total energy + Delta-G solvation = -3983.280958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55999 -38.44318 -37.18490 -36.03362 -35.91232 -34.91788 -33.30115 -32.81842 -31.86529 -30.14112 -27.79142 -25.97150 -24.70479 -24.05547 -22.16307 -21.44313 -20.72275 -20.57386 -18.86189 -18.06916 -17.41980 -16.76011 -16.40822 -16.11155 -15.90005 -15.51006 -15.16743 -14.84573 -14.63363 -14.51605 -14.34215 -13.96422 -13.61628 -13.51944 -13.00890 -12.77042 -12.71992 -12.51378 -12.30949 -12.14451 -12.03767 -11.90731 -11.73666 -11.56775 -11.44325 -11.27141 -11.16745 -11.06008 -10.93931 -10.85941 -10.69447 -10.63045 -10.54188 -10.13485 -9.55620 -9.54032 -9.29105 -9.24160 -8.38972 -6.05362 -4.09101 0.20158 2.16641 2.57950 3.01482 3.31470 3.37426 3.42034 3.79164 4.06494 4.28843 4.41717 4.47880 4.50328 4.59238 4.70998 4.74767 4.87623 4.97669 4.99137 5.05891 5.19352 5.26598 5.31203 5.36226 5.45248 5.47432 5.54913 5.57923 5.69194 5.69273 5.78111 5.85110 5.86195 5.98007 6.00694 6.16417 6.22593 6.31949 6.74671 7.06886 7.61395 7.71271 7.90162 8.13660 8.30378 8.96321 9.54636 11.06312 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.003527 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.150288 B = 7936.358133 C = 8992.429140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.623 4.623 4 S 2.600 3.400 5 O -0.962 6.962 6 O -0.936 6.936 7 N -0.991 5.991 8 C 0.122 3.878 9 C -0.139 4.139 10 C -0.114 4.114 11 C -0.126 4.126 12 C 0.162 3.838 13 H 0.111 0.889 14 C 0.469 3.531 15 O -0.530 6.530 16 O -0.336 6.336 17 C 0.079 3.921 18 C 0.023 3.977 19 C -0.523 4.523 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.029 0.971 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 8.730 21.879 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.753 4.753 4 S 2.696 3.304 5 O -0.952 6.952 6 O -0.926 6.926 7 N -0.830 5.830 8 C -0.003 4.003 9 C -0.178 4.178 10 C -0.152 4.152 11 C -0.165 4.165 12 C 0.054 3.946 13 H 0.129 0.871 14 C 0.313 3.687 15 O -0.423 6.423 16 O -0.250 6.250 17 C 0.007 3.993 18 C -0.014 4.014 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.181 0.819 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.048 0.952 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.710 7.841 21.711 24.672 hybrid contribution -0.963 -0.266 -0.846 1.309 sum -9.673 7.574 20.865 24.213 Atomic orbital electron populations 1.21674 0.93944 1.02055 1.02276 1.21213 0.98646 0.92237 1.03193 1.30834 1.25736 1.06081 1.12690 1.05395 0.78284 0.72556 0.74153 1.93557 1.78350 1.77780 1.45551 1.93640 1.77900 1.77084 1.43954 1.57791 1.85094 1.29420 1.10651 1.21410 1.00664 0.94179 0.84038 1.21910 1.00568 0.96578 0.98715 1.21463 1.02403 0.97932 0.93397 1.21912 1.00053 0.94582 0.99917 1.20489 1.03011 0.90987 0.80068 0.87068 1.22961 0.83213 0.78096 0.84436 1.90465 1.23376 1.48268 1.80196 1.86442 1.46546 1.63750 1.28258 1.23691 0.99171 0.92013 0.84450 1.19181 0.93854 0.98231 0.90099 1.20977 1.03017 1.29875 1.02298 0.92275 1.24979 0.94803 0.96026 0.98365 1.69977 1.10148 1.43866 1.28919 0.86480 0.78479 0.80607 0.81781 1.20546 1.21077 1.19724 0.91972 0.92137 0.92618 0.91127 0.90157 0.81902 0.86187 0.88655 0.90424 0.90257 0.91348 0.91080 0.90960 0.89580 0.90246 0.91365 0.92488 0.95506 0.95217 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.11 -1.29 5.94 -26.73 -0.16 -1.45 16 3 C -0.62 -7.12 5.72 37.16 0.21 -6.90 16 4 S 2.60 37.28 4.73 -107.50 -0.51 36.77 16 5 O -0.96 -14.98 16.63 -57.54 -0.96 -15.94 16 6 O -0.94 -17.82 14.01 -68.16 -0.95 -18.77 16 7 N -0.99 -11.56 3.22 -107.93 -0.35 -11.91 16 8 C 0.12 1.01 6.30 -3.93 -0.02 0.98 16 9 C -0.14 -0.84 6.06 -26.83 -0.16 -1.00 16 10 C -0.11 -0.74 5.89 -26.69 -0.16 -0.90 16 11 C -0.13 -1.14 5.35 -26.61 -0.14 -1.28 16 12 C 0.16 2.01 3.32 -68.74 -0.23 1.78 16 13 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.47 8.11 4.19 36.00 0.15 8.26 16 15 O -0.53 -9.41 11.40 -26.54 -0.30 -9.71 16 16 O -0.34 -7.01 10.22 -42.16 -0.43 -7.44 16 17 C 0.08 1.84 5.40 37.16 0.20 2.04 16 18 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 19 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 20 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 23 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.16 2.04 5.43 -51.93 -0.28 1.76 16 33 H 0.12 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.10 0.75 7.01 -51.93 -0.36 0.38 16 35 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.07 1.65 8.13 -51.93 -0.42 1.23 16 43 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -35.21 377.35 -10.40 -45.61 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.79 Total: -2.22 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.50 Total: -12.70 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.39 Total: -38.02 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -2.64 Total: -51.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 37.28 SS G_CDS: -0.51 Total: 36.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.21 -10.40 -45.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061802142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.506 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds