Wall clock time and date at job start Tue Mar 31 2020 17:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 S 1.81405 * 109.47063 * 180.02562 * 3 2 1 5 5 O 1.42097 * 110.54119 * 291.62598 * 4 3 2 6 6 O 1.42096 * 110.54078 * 68.37999 * 4 3 2 7 7 N 1.65601 * 104.44602 * 180.02562 * 4 3 2 8 8 C 1.46919 * 120.63240 * 92.79954 * 7 4 3 9 9 C 1.52764 * 109.00892 * 233.57850 * 8 7 4 10 10 C 1.53039 * 109.38514 * 305.59181 * 9 8 7 11 11 C 1.53042 * 109.53988 * 61.23808 * 10 9 8 12 12 C 1.46936 * 120.62574 * 273.07625 * 7 4 3 13 13 H 1.09000 * 109.58580 * 246.15486 * 12 7 4 14 14 C 1.50697 * 109.58789 * 6.58448 * 12 7 4 15 15 O 1.20828 * 119.99956 * 52.85574 * 14 12 7 16 16 O 1.34223 * 119.99930 * 232.85231 * 14 12 7 17 17 C 1.45205 * 116.99855 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.46958 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.46962 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00484 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99919 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00196 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00208 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46929 * 89.99960 * 23 21 19 25 25 H 1.48496 * 109.47375 * 210.00097 * 23 21 19 26 26 H 1.48494 * 109.46746 * 330.00068 * 23 21 19 27 27 H 1.08996 * 109.47274 * 59.99970 * 1 2 3 28 28 H 1.09002 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47460 * 299.99776 * 1 2 3 30 30 H 1.08999 * 109.47735 * 120.00258 * 2 1 3 31 31 H 1.09005 * 109.47182 * 240.00797 * 2 1 3 32 32 H 1.08996 * 109.47115 * 300.00127 * 3 2 1 33 33 H 1.09005 * 109.46486 * 60.00371 * 3 2 1 34 34 H 1.08997 * 109.58918 * 353.41863 * 8 7 4 35 35 H 1.09011 * 109.58408 * 113.84488 * 8 7 4 36 36 H 1.08997 * 109.56459 * 185.55218 * 9 8 7 37 37 H 1.08998 * 109.37994 * 65.51699 * 9 8 7 38 38 H 1.09005 * 109.45714 * 301.21669 * 10 9 8 39 39 H 1.09002 * 109.44860 * 181.25277 * 10 9 8 40 40 H 1.08998 * 109.49849 * 178.68407 * 11 10 9 41 41 H 1.08999 * 109.49842 * 58.58154 * 11 10 9 42 42 H 1.09003 * 109.47157 * 299.99880 * 17 16 14 43 43 H 1.09003 * 109.47105 * 59.99904 * 17 16 14 44 44 H 1.08993 * 109.47657 * 300.00343 * 18 17 16 45 45 H 1.09003 * 109.47134 * 60.00114 * 18 17 16 46 46 H 0.96998 * 120.00088 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3531 0.9520 1.2359 6 8 4.3520 0.9525 -1.2381 7 7 4.2671 3.0462 0.0000 8 6 4.5142 3.7550 1.2630 9 6 3.6370 5.0047 1.3121 10 6 3.8836 5.8479 0.0590 11 6 3.5063 5.0394 -1.1844 12 6 4.3876 3.7887 -1.2622 13 1 5.4260 4.0824 -1.4156 14 6 3.9312 2.9194 -2.4053 15 8 2.8470 2.3876 -2.3645 16 8 4.7291 2.7358 -3.4690 17 6 4.2242 1.8864 -4.5330 18 6 5.2645 1.7971 -5.6513 19 6 4.7408 0.9151 -6.7552 20 1 3.7635 0.4636 -6.6682 21 6 5.5093 0.6843 -7.8764 22 7 6.6992 1.2344 -7.9828 23 14 4.8599 -0.4085 -9.2453 24 1 4.1170 0.4193 -10.2292 25 1 5.9969 -1.0815 -9.9230 26 1 3.9495 -1.4319 -8.6718 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 4.2676 3.1039 2.1017 35 1 5.5632 4.0459 1.3196 36 1 3.8837 5.5892 2.1984 37 1 2.5885 4.7093 1.3513 38 1 4.9372 6.1226 0.0077 39 1 3.2746 6.7509 0.1036 40 1 3.6601 5.6487 -2.0750 41 1 2.4592 4.7432 -1.1220 42 1 4.0270 0.8893 -4.1392 43 1 3.3011 2.3099 -4.9289 44 1 5.4614 2.7942 -6.0449 45 1 6.1878 1.3739 -5.2556 46 1 7.2397 1.0723 -8.7717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061802142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:07 Heat of formation + Delta-G solvation = -191.073602 kcal Electronic energy + Delta-G solvation = -28687.505282 eV Core-core repulsion = 24703.228653 eV Total energy + Delta-G solvation = -3984.276628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88526 -39.39350 -38.49880 -37.43966 -37.19115 -35.81682 -35.45285 -33.55006 -32.85530 -32.06686 -28.65853 -27.47627 -26.12757 -24.89050 -23.18225 -22.97446 -22.28658 -21.34956 -19.93900 -19.33932 -18.81682 -18.24438 -17.91069 -17.51116 -17.20717 -16.83588 -16.46331 -16.13737 -15.62148 -15.57495 -15.25160 -14.93350 -14.69179 -14.47079 -14.41712 -14.38843 -13.79744 -13.68021 -13.50755 -13.26539 -13.24928 -13.10289 -13.00930 -12.94659 -12.64756 -12.55911 -12.46661 -12.37080 -12.16190 -11.95485 -11.78586 -11.75945 -11.58160 -11.49401 -11.42728 -11.39213 -11.14305 -10.61635 -10.12873 -8.27396 -6.40903 -0.87651 0.92764 1.38143 1.41781 1.42465 1.53657 1.72110 2.38970 2.72347 3.00127 3.06589 3.38167 3.50690 3.68945 3.75201 3.82021 4.06207 4.06994 4.15266 4.22923 4.23469 4.26789 4.33287 4.38898 4.60881 4.65816 4.68283 4.71003 4.72479 4.88196 4.97448 5.00301 5.04439 5.11879 5.17418 5.23735 5.25642 5.27881 5.46488 5.46956 5.48841 5.59980 5.76309 6.05819 6.62355 6.72491 7.28516 8.85585 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.003527 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.150288 B = 7936.358133 C = 8992.429140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C -0.601 4.601 4 S 2.590 3.410 5 O -0.981 6.981 6 O -0.994 6.994 7 N -0.989 5.989 8 C 0.110 3.890 9 C -0.134 4.134 10 C -0.110 4.110 11 C -0.122 4.122 12 C 0.167 3.833 13 H 0.118 0.882 14 C 0.459 3.541 15 O -0.536 6.536 16 O -0.354 6.354 17 C 0.097 3.903 18 C 0.030 3.970 19 C -0.550 4.550 20 H 0.064 0.936 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.975 3.025 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.265 1.265 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.010 0.990 45 H -0.002 1.002 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 9.968 23.349 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.735 4.735 4 S 2.691 3.309 5 O -0.972 6.972 6 O -0.985 6.985 7 N -0.829 5.829 8 C -0.013 4.013 9 C -0.172 4.172 10 C -0.148 4.148 11 C -0.161 4.161 12 C 0.060 3.940 13 H 0.136 0.864 14 C 0.304 3.696 15 O -0.428 6.428 16 O -0.269 6.269 17 C 0.024 3.976 18 C -0.007 4.007 19 C -0.588 4.588 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.566 5.566 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.189 1.189 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.029 0.971 45 H 0.017 0.983 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.674 9.092 23.218 27.123 hybrid contribution -0.351 -0.624 -1.181 1.382 sum -11.025 8.468 22.036 26.055 Atomic orbital electron populations 1.21691 0.92040 1.03057 1.02995 1.21373 1.00355 0.91993 1.02835 1.30634 1.21929 1.06706 1.14198 1.05359 0.79776 0.73105 0.72683 1.93520 1.79560 1.78609 1.45498 1.93572 1.79904 1.78739 1.46249 1.57593 1.85446 1.28381 1.11495 1.21786 1.02050 0.95130 0.82287 1.21931 1.00393 0.95376 0.99540 1.21495 1.03243 0.98121 0.91912 1.21999 0.99255 0.93015 1.01854 1.20656 1.04152 0.90918 0.78285 0.86445 1.24011 0.82938 0.78299 0.84387 1.90450 1.23697 1.48581 1.80116 1.86412 1.47789 1.63632 1.29091 1.23117 0.98015 0.92001 0.84441 1.18988 0.93626 0.96819 0.91263 1.21359 1.03570 1.30609 1.03251 0.91746 1.25995 0.94884 0.97363 1.01092 1.70104 1.11472 1.45077 1.29982 0.85298 0.78087 0.78588 0.78169 1.19104 1.20342 1.18887 0.92630 0.91129 0.90476 0.89879 0.92401 0.82696 0.82207 0.88162 0.89559 0.87572 0.90644 0.90460 0.88880 0.89180 0.90139 0.92920 0.91520 0.97117 0.98332 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.13 -2.76 5.94 30.59 0.18 -2.58 16 3 C -0.60 -12.95 5.72 71.98 0.41 -12.54 16 4 S 2.59 74.78 4.73 -56.49 -0.27 74.52 16 5 O -0.98 -30.54 16.63 -127.65 -2.12 -32.66 16 6 O -0.99 -39.96 14.01 -117.50 -1.65 -41.61 16 7 N -0.99 -22.12 3.22 -495.40 -1.60 -23.72 16 8 C 0.11 1.57 6.30 86.22 0.54 2.11 16 9 C -0.13 -1.09 6.06 30.53 0.19 -0.91 16 10 C -0.11 -1.03 5.89 30.62 0.18 -0.85 16 11 C -0.12 -1.97 5.35 30.67 0.16 -1.80 16 12 C 0.17 4.05 3.32 44.23 0.15 4.20 16 13 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 14 C 0.46 16.24 4.19 71.24 0.30 16.54 16 15 O -0.54 -19.41 11.40 29.41 0.34 -19.07 16 16 O -0.35 -15.50 10.22 -48.57 -0.50 -16.00 16 17 C 0.10 4.76 5.40 71.98 0.39 5.15 16 18 C 0.03 1.73 5.35 29.85 0.16 1.89 16 19 C -0.55 -32.62 9.11 25.60 0.23 -32.39 16 20 H 0.06 3.65 7.74 -2.91 -0.02 3.63 16 21 C 0.01 0.32 5.46 84.65 0.46 0.79 16 22 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 23 Si 0.98 44.85 29.54 68.60 2.03 46.87 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.16 3.73 5.43 -2.39 -0.01 3.72 16 33 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 1.34 7.01 -2.39 -0.02 1.33 16 35 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.11 0.38 8.14 -2.39 -0.02 0.37 16 37 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 42 H 0.05 2.70 8.13 -2.39 -0.02 2.68 16 43 H 0.07 3.07 8.13 -2.39 -0.02 3.05 16 44 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -79.74 377.35 1.53 -78.21 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.95 Total: 12.37 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 4.07 Total: -22.03 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.31 Total: -80.60 kcal Atomic # 8 Polarization: -105.41 SS G_CDS: -3.93 Total: -109.34 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 74.78 SS G_CDS: -0.27 Total: 74.52 kcal Total: -79.74 1.53 -78.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061802142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.864 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds