Wall clock time and date at job start Tue Mar 31 2020 18:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21280 * 120.00742 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99510 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47049 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47346 * 180.02562 * 16 15 13 18 18 O 1.21293 * 119.99721 * 0.02562 * 17 16 15 19 19 C 1.46856 * 119.99935 * 180.02562 * 17 16 15 20 20 C 1.40008 * 120.13228 * 359.72288 * 19 17 16 21 21 C 1.37599 * 119.94423 * 179.75918 * 20 19 17 22 22 C 1.39102 * 120.30316 * 0.58718 * 21 20 19 23 23 C 1.39355 * 120.08726 * 359.61405 * 22 21 20 24 24 C 1.38168 * 119.98307 * 0.11320 * 23 22 21 25 25 O 1.36146 * 120.75246 * 180.26751 * 23 22 21 26 26 C 1.43173 * 116.70788 * 342.86229 * 25 23 22 27 27 C 1.53466 * 108.23333 * 46.14087 * 26 25 23 28 28 O 1.35928 * 119.21421 * 179.51751 * 22 21 20 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 34 34 H 1.08995 * 109.47765 * 299.99977 * 15 13 12 35 35 H 1.09000 * 109.47068 * 60.00791 * 15 13 12 36 36 H 1.09000 * 109.47444 * 300.00712 * 16 15 13 37 37 H 1.09000 * 109.46920 * 60.00019 * 16 15 13 38 38 H 1.08004 * 120.02603 * 0.03226 * 20 19 17 39 39 H 1.08008 * 119.84853 * 180.29807 * 21 20 19 40 40 H 1.08004 * 120.03050 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.70835 * 165.82262 * 26 25 23 42 42 H 1.08994 * 109.70930 * 286.45187 * 26 25 23 43 43 H 1.09002 * 109.71050 * 59.84894 * 27 26 25 44 44 H 1.08994 * 109.70954 * 180.47336 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4118 15 6 2.6489 -0.7289 3.5877 16 6 2.6999 0.2540 4.7590 17 6 3.2023 -0.4563 5.9895 18 8 3.4916 -1.6330 5.9347 19 6 3.3417 0.2760 7.2547 20 6 3.0140 1.6357 7.3196 21 6 3.1413 2.3170 8.5083 22 6 3.6061 1.6640 9.6452 23 6 3.9383 0.3118 9.5876 24 6 3.8081 -0.3811 8.3993 25 8 4.3893 -0.3419 10.6933 26 6 4.8588 0.4707 11.7745 27 6 3.8393 1.5935 12.0092 28 8 3.7326 2.3608 10.8054 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 0.7092 1.1618 -3.4843 33 1 2.2490 -1.6318 1.1525 34 1 1.9761 -1.5507 3.8326 35 1 3.6480 -1.1213 3.3985 36 1 3.3725 1.0762 4.5145 37 1 1.7006 0.6462 4.9480 38 1 2.6575 2.1483 6.4383 39 1 2.8836 3.3647 8.5577 40 1 4.0657 -1.4290 8.3537 41 1 4.9525 -0.1351 12.6759 42 1 5.8269 0.9007 11.5177 43 1 2.8693 1.1632 12.2579 44 1 4.1781 2.2332 12.8240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:19 Heat of formation + Delta-G solvation = -129.813207 kcal Electronic energy + Delta-G solvation = -27132.161565 eV Core-core repulsion = 23015.097435 eV Total energy + Delta-G solvation = -4117.064130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71456 -39.94724 -38.72354 -37.74245 -37.51463 -34.84280 -32.86852 -32.32876 -31.68710 -31.12509 -29.45001 -28.73879 -26.01352 -25.27520 -25.10249 -23.03996 -22.18530 -20.90275 -19.80128 -19.30943 -19.02585 -17.75136 -17.69559 -17.02325 -16.11808 -15.89804 -15.78755 -15.68809 -15.39969 -15.08699 -14.88975 -14.80360 -14.30459 -14.22432 -14.11935 -13.84732 -13.66862 -13.02247 -12.79182 -12.60557 -12.38158 -12.27963 -11.70775 -11.64867 -11.57481 -11.53922 -11.09038 -11.05148 -10.95262 -10.90131 -10.68856 -10.28497 -10.22248 -9.83766 -9.08950 -9.02899 -8.98108 -8.53490 -8.52784 -7.87629 -6.10815 -4.19706 0.31930 0.92888 2.13405 2.54072 2.70053 3.25053 3.32849 3.35814 3.40025 3.44244 3.67184 3.77374 4.12453 4.25492 4.28165 4.36975 4.45957 4.62756 4.76534 4.80182 4.90512 4.95413 4.97735 5.21106 5.23243 5.24005 5.45905 5.57788 5.69983 5.75370 5.88208 5.95128 5.99337 6.09957 6.13136 6.40190 6.84751 6.91868 6.99021 7.17658 7.40940 7.49234 7.59038 7.72086 7.93953 8.17256 8.70533 8.80402 9.16219 9.48059 10.95212 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.036400 B = 0.001773 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.041601 B =15789.644244 C =16248.740434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.709 5.709 13 C 0.501 3.499 14 O -0.560 6.560 15 C -0.134 4.134 16 C -0.147 4.147 17 C 0.401 3.599 18 O -0.453 6.453 19 C -0.165 4.165 20 C -0.062 4.062 21 C -0.127 4.127 22 C 0.080 3.920 23 C 0.033 3.967 24 C -0.054 4.054 25 O -0.306 6.306 26 C 0.020 3.980 27 C 0.019 3.981 28 O -0.304 6.304 29 H 0.090 0.910 30 H 0.026 0.974 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.390 0.610 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 0.759 29.605 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.357 5.357 13 C 0.286 3.714 14 O -0.441 6.441 15 C -0.174 4.174 16 C -0.185 4.185 17 C 0.279 3.721 18 O -0.328 6.328 19 C -0.166 4.166 20 C -0.080 4.080 21 C -0.145 4.145 22 C 0.034 3.966 23 C -0.012 4.012 24 C -0.073 4.073 25 O -0.221 6.221 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.218 6.218 29 H 0.108 0.892 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.222 0.778 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.923 1.101 29.496 30.105 hybrid contribution 0.452 -0.804 -0.542 1.070 sum 6.375 0.296 28.954 29.649 Atomic orbital electron populations 1.22071 0.98495 0.99090 1.00865 1.18747 0.91028 0.94003 0.80149 0.93368 1.21277 1.32282 1.13179 0.90358 0.92009 1.24897 0.94839 0.94974 0.99082 1.69913 1.36007 1.22496 1.23735 0.86393 0.78593 0.79538 0.82569 1.19731 1.20900 1.20898 1.46535 1.64868 1.13642 1.10609 1.20406 0.78626 0.87498 0.84891 1.90639 1.51841 1.16182 1.85390 1.21476 1.03865 0.99032 0.93050 1.21746 1.04681 0.99895 0.92140 1.22441 0.73393 0.87730 0.88551 1.90532 1.38470 1.17296 1.86539 1.20293 1.06134 0.95070 0.95123 1.21362 0.96068 0.92782 0.97788 1.20443 1.02368 1.01363 0.90356 1.19274 0.99388 0.90349 0.87590 1.18723 1.02960 0.90966 0.88517 1.20645 0.97322 1.01044 0.88296 1.86357 1.78372 1.33810 1.23514 1.23653 0.97223 0.94131 0.90576 1.23695 1.00544 0.95054 0.86357 1.86287 1.88418 1.34130 1.12945 0.89191 0.95506 0.96653 0.92662 0.77800 0.88925 0.88858 0.87321 0.87351 0.83304 0.83928 0.83642 0.85850 0.90317 0.90164 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.71 2.56 -69.08 -0.18 6.54 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.71 -14.79 5.07 -54.93 -0.28 -15.07 16 13 C 0.50 9.70 7.79 -10.99 -0.09 9.61 16 14 O -0.56 -12.74 15.65 5.56 0.09 -12.65 16 15 C -0.13 -1.92 4.99 -27.88 -0.14 -2.06 16 16 C -0.15 -1.81 3.59 -27.88 -0.10 -1.91 16 17 C 0.40 4.88 7.11 -30.82 -0.22 4.66 16 18 O -0.45 -6.61 15.97 5.55 0.09 -6.52 16 19 C -0.16 -1.79 5.87 -105.10 -0.62 -2.41 16 20 C -0.06 -0.57 9.46 -39.15 -0.37 -0.94 16 21 C -0.13 -1.13 9.94 -39.49 -0.39 -1.52 16 22 C 0.08 0.78 6.51 -38.85 -0.25 0.53 16 23 C 0.03 0.34 6.48 -39.19 -0.25 0.09 16 24 C -0.05 -0.60 9.50 -38.95 -0.37 -0.97 16 25 O -0.31 -2.88 10.41 -32.94 -0.34 -3.23 16 26 C 0.02 0.10 7.26 37.40 0.27 0.38 16 27 C 0.02 0.09 7.25 37.40 0.27 0.37 16 28 O -0.30 -2.61 10.40 -32.25 -0.34 -2.95 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 7.11 8.54 -40.82 -0.35 6.76 16 34 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.11 1.29 8.03 -51.93 -0.42 0.87 16 37 H 0.11 1.27 8.05 -51.93 -0.42 0.85 16 38 H 0.15 1.13 7.04 -52.48 -0.37 0.76 16 39 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.15 1.63 7.64 -52.48 -0.40 1.23 16 41 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -33.70 373.38 -8.04 -41.74 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.00 Total: 5.48 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.49 Total: -3.82 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.35 Total: -39.43 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.50 Total: -25.35 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.70 -8.04 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.076 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds