Wall clock time and date at job start Tue Mar 31 2020 18:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21280 * 120.00742 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99510 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47049 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47346 * 180.02562 * 16 15 13 18 18 O 1.21293 * 119.99721 * 0.02562 * 17 16 15 19 19 C 1.46856 * 119.99935 * 180.02562 * 17 16 15 20 20 C 1.40008 * 120.13228 * 359.72288 * 19 17 16 21 21 C 1.37599 * 119.94423 * 179.75918 * 20 19 17 22 22 C 1.39102 * 120.30316 * 0.58718 * 21 20 19 23 23 C 1.39355 * 120.08726 * 359.61405 * 22 21 20 24 24 C 1.38168 * 119.98307 * 0.11320 * 23 22 21 25 25 O 1.36146 * 120.75246 * 180.26751 * 23 22 21 26 26 C 1.43173 * 116.70788 * 342.86229 * 25 23 22 27 27 C 1.53466 * 108.23333 * 46.14087 * 26 25 23 28 28 O 1.35928 * 119.21421 * 179.51751 * 22 21 20 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 34 34 H 1.08995 * 109.47765 * 299.99977 * 15 13 12 35 35 H 1.09000 * 109.47068 * 60.00791 * 15 13 12 36 36 H 1.09000 * 109.47444 * 300.00712 * 16 15 13 37 37 H 1.09000 * 109.46920 * 60.00019 * 16 15 13 38 38 H 1.08004 * 120.02603 * 0.03226 * 20 19 17 39 39 H 1.08008 * 119.84853 * 180.29807 * 21 20 19 40 40 H 1.08004 * 120.03050 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.70835 * 165.82262 * 26 25 23 42 42 H 1.08994 * 109.70930 * 286.45187 * 26 25 23 43 43 H 1.09002 * 109.71050 * 59.84894 * 27 26 25 44 44 H 1.08994 * 109.70954 * 180.47336 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4118 15 6 2.6489 -0.7289 3.5877 16 6 2.6999 0.2540 4.7590 17 6 3.2023 -0.4563 5.9895 18 8 3.4916 -1.6330 5.9347 19 6 3.3417 0.2760 7.2547 20 6 3.0140 1.6357 7.3196 21 6 3.1413 2.3170 8.5083 22 6 3.6061 1.6640 9.6452 23 6 3.9383 0.3118 9.5876 24 6 3.8081 -0.3811 8.3993 25 8 4.3893 -0.3419 10.6933 26 6 4.8588 0.4707 11.7745 27 6 3.8393 1.5935 12.0092 28 8 3.7326 2.3608 10.8054 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 0.7092 1.1618 -3.4843 33 1 2.2490 -1.6318 1.1525 34 1 1.9761 -1.5507 3.8326 35 1 3.6480 -1.1213 3.3985 36 1 3.3725 1.0762 4.5145 37 1 1.7006 0.6462 4.9480 38 1 2.6575 2.1483 6.4383 39 1 2.8836 3.3647 8.5577 40 1 4.0657 -1.4290 8.3537 41 1 4.9525 -0.1351 12.6759 42 1 5.8269 0.9007 11.5177 43 1 2.8693 1.1632 12.2579 44 1 4.1781 2.2332 12.8240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:18 Heat of formation + Delta-G solvation = -151.784847 kcal Electronic energy + Delta-G solvation = -27133.114327 eV Core-core repulsion = 23015.097435 eV Total energy + Delta-G solvation = -4118.016892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.35272 -41.01129 -40.21760 -38.36913 -38.28604 -36.72844 -34.30875 -33.95300 -32.39817 -31.84804 -30.89772 -29.80758 -27.34905 -26.98144 -25.88297 -23.97123 -23.02228 -22.44774 -21.06688 -20.56253 -19.72488 -18.95235 -18.32450 -18.29838 -17.41590 -17.18504 -16.91192 -16.74959 -16.46712 -16.07558 -15.81755 -15.75282 -15.57886 -15.43042 -14.96781 -14.80393 -14.42101 -14.38014 -14.31486 -13.93542 -13.59914 -13.50363 -13.12595 -12.93726 -12.83891 -12.73292 -12.59488 -12.26429 -12.23025 -12.12135 -12.08129 -12.04483 -11.54828 -11.07294 -10.83685 -10.69622 -10.54496 -9.81612 -9.69859 -9.24246 -8.16551 -6.33468 -0.48854 0.19938 1.28311 1.44687 1.45905 1.57840 1.87434 1.94790 2.14081 2.36494 2.59398 2.63417 3.11918 3.14467 3.18771 3.56778 3.70484 3.91287 3.97558 4.03233 4.10852 4.18828 4.20567 4.26541 4.36671 4.56344 4.58455 4.67950 4.74256 4.79573 4.91386 4.95761 4.98563 5.00850 5.05952 5.12898 5.20921 5.43669 5.46606 5.64288 5.72742 5.79743 5.93320 6.12923 6.27396 6.46978 6.75059 7.00789 7.34228 7.59533 8.89828 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.036400 B = 0.001773 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.041601 B =15789.644244 C =16248.740434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.283 1.283 12 N -0.709 5.709 13 C 0.500 3.500 14 O -0.596 6.596 15 C -0.121 4.121 16 C -0.144 4.144 17 C 0.413 3.587 18 O -0.482 6.482 19 C -0.178 4.178 20 C -0.056 4.056 21 C -0.129 4.129 22 C 0.079 3.921 23 C 0.025 3.975 24 C -0.068 4.068 25 O -0.325 6.325 26 C 0.012 3.988 27 C 0.013 3.987 28 O -0.314 6.314 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 0.306 31.029 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.019 0.981 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.287 3.713 14 O -0.478 6.478 15 C -0.161 4.161 16 C -0.181 4.181 17 C 0.293 3.707 18 O -0.360 6.360 19 C -0.179 4.179 20 C -0.074 4.074 21 C -0.148 4.148 22 C 0.032 3.968 23 C -0.020 4.020 24 C -0.087 4.087 25 O -0.240 6.240 26 C -0.062 4.062 27 C -0.061 4.061 28 O -0.228 6.228 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.154 0.846 41 H 0.172 0.828 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.603 0.626 30.963 31.665 hybrid contribution 0.264 -0.586 -0.821 1.042 sum 6.867 0.041 30.142 30.914 Atomic orbital electron populations 1.21892 0.98283 0.99378 0.99684 1.18356 0.91163 0.92027 0.82018 0.98068 1.21597 1.32437 1.13486 0.90952 0.91054 1.25791 0.94929 0.95623 1.02288 1.70053 1.37044 1.23899 1.24513 0.85301 0.78073 0.78499 0.78475 1.18556 1.20448 1.20910 1.46335 1.65194 1.14307 1.09947 1.21220 0.77375 0.87121 0.85571 1.90621 1.53154 1.17995 1.85998 1.21413 1.04490 0.99262 0.90914 1.21743 1.05426 0.99560 0.91421 1.22429 0.72296 0.87192 0.88815 1.90525 1.40120 1.18416 1.86930 1.20192 1.07549 0.95771 0.94432 1.21538 0.95248 0.92046 0.98569 1.20723 1.01805 1.02281 0.89960 1.19450 0.98751 0.90117 0.88447 1.18783 1.03186 0.91330 0.88726 1.20655 0.98138 1.00842 0.89042 1.86325 1.78442 1.35202 1.24050 1.24012 0.97209 0.94606 0.90400 1.24039 1.00832 0.95500 0.85739 1.86272 1.88125 1.34954 1.13481 0.91558 0.94299 0.96578 0.92560 0.76098 0.87390 0.87589 0.86700 0.86561 0.81718 0.81955 0.84590 0.82775 0.90044 0.89835 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.92 2.56 44.24 0.11 14.03 16 3 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 4 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.97 42.31 29.54 68.60 2.03 44.33 16 9 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.71 -29.38 5.07 -446.10 -2.26 -31.64 16 13 C 0.50 19.13 7.79 87.66 0.68 19.82 16 14 O -0.60 -27.27 15.65 -3.03 -0.05 -27.32 16 15 C -0.12 -3.30 4.99 29.85 0.15 -3.15 16 16 C -0.14 -3.37 3.59 29.85 0.11 -3.26 16 17 C 0.41 9.76 7.11 27.94 0.20 9.95 16 18 O -0.48 -13.89 15.97 -3.07 -0.05 -13.94 16 19 C -0.18 -3.79 5.87 -20.17 -0.12 -3.91 16 20 C -0.06 -0.96 9.46 22.55 0.21 -0.74 16 21 C -0.13 -2.12 9.94 22.33 0.22 -1.89 16 22 C 0.08 1.45 6.51 22.75 0.15 1.59 16 23 C 0.02 0.50 6.48 22.52 0.15 0.65 16 24 C -0.07 -1.52 9.50 22.68 0.22 -1.30 16 25 O -0.32 -5.91 10.41 -83.03 -0.86 -6.78 16 26 C 0.01 0.11 7.26 72.14 0.52 0.63 16 27 C 0.01 0.10 7.25 72.14 0.52 0.62 16 28 O -0.31 -4.83 10.40 -80.56 -0.84 -5.67 16 29 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.40 14.31 8.54 -92.70 -0.79 13.52 16 34 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 35 H 0.11 2.68 8.10 -2.39 -0.02 2.66 16 36 H 0.11 2.58 8.03 -2.39 -0.02 2.56 16 37 H 0.12 2.57 8.05 -2.39 -0.02 2.55 16 38 H 0.17 2.21 7.04 -2.91 -0.02 2.19 16 39 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.14 3.19 7.64 -2.91 -0.02 3.17 16 41 H 0.15 0.29 8.14 -2.39 -0.02 0.28 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -73.79 373.38 2.92 -70.87 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.24 Total: 23.33 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 4.46 Total: -0.80 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.02 Total: -84.03 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.80 Total: -53.71 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -73.79 2.92 -70.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.910 kcal (2) G-P(sol) polarization free energy of solvation -73.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds