Wall clock time and date at job start Tue Mar 31 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00056 * 2 1 4 4 O 1.20827 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00049 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47226 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.47058 * 305.00270 * 6 5 3 8 8 C 1.52994 * 109.47247 * 184.99943 * 6 5 3 9 9 N 1.46502 * 109.46920 * 64.99928 * 6 5 3 10 10 C 1.34779 * 120.00004 * 204.99828 * 9 6 5 11 11 O 1.21718 * 119.99908 * 0.02562 * 10 9 6 12 12 C 1.46255 * 119.99865 * 180.02562 * 10 9 6 13 13 C 1.35018 * 120.00033 * 180.02562 * 12 10 9 14 14 C 1.46960 * 120.00382 * 179.97438 * 13 12 10 15 15 C 1.40026 * 120.10267 * 179.97438 * 14 13 12 16 16 C 1.37594 * 119.89660 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10071 * 0.27233 * 16 15 14 18 18 O 1.35579 * 119.89553 * 179.70771 * 17 16 15 19 19 C 1.34781 * 117.00320 * 354.44312 * 18 17 16 20 20 H 1.08005 * 119.99725 * 5.05569 * 19 18 17 21 21 C 1.38715 * 120.00342 * 185.05925 * 19 18 17 22 22 N 1.31503 * 120.00014 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99770 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46728 * 89.99874 * 23 21 19 25 25 H 1.48502 * 109.47119 * 210.00016 * 23 21 19 26 26 H 1.48502 * 109.47082 * 330.00327 * 23 21 19 27 27 C 1.39173 * 120.20477 * 359.44770 * 17 16 15 28 28 C 1.37597 * 120.09926 * 0.55723 * 27 17 16 29 29 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46812 * 299.99676 * 1 2 3 31 31 H 1.09000 * 109.47429 * 59.99452 * 1 2 3 32 32 H 1.08997 * 109.47022 * 60.00611 * 5 3 2 33 33 H 1.09000 * 109.47314 * 299.99838 * 5 3 2 34 34 H 1.09003 * 109.47065 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.47359 * 300.00143 * 8 6 5 36 36 H 1.09005 * 109.46948 * 60.00449 * 8 6 5 37 37 H 0.97004 * 120.00347 * 25.00647 * 9 6 5 38 38 H 1.08003 * 120.00048 * 359.97438 * 12 10 9 39 39 H 1.08003 * 119.99918 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.05214 * 359.95709 * 15 14 13 41 41 H 1.08001 * 119.95149 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99590 * 179.97438 * 22 21 19 43 43 H 1.08004 * 119.95204 * 180.27325 * 27 17 16 44 44 H 1.08000 * 120.05069 * 179.74232 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 1 3.5376 3.2582 -0.8410 8 6 5.5227 2.8238 -0.1261 9 7 3.5794 3.3750 1.2526 10 6 3.3826 4.7075 1.3014 11 8 3.5541 5.3848 0.3047 12 6 2.9630 5.3394 2.5518 13 6 2.7654 6.6742 2.6006 14 6 2.3433 7.3092 3.8569 15 6 2.1382 8.6933 3.9099 16 6 1.7425 9.2833 5.0883 17 6 1.5515 8.5073 6.2277 18 8 1.1673 9.0939 7.3881 19 6 1.0998 10.4399 7.4004 20 1 1.2667 10.9973 6.4905 21 6 0.8162 11.1095 8.5817 22 7 0.7509 12.4228 8.5938 23 14 0.5270 10.1454 10.1554 24 1 1.8183 9.9553 10.8638 25 1 -0.4115 10.8943 11.0294 26 1 -0.0556 8.8202 9.8241 27 6 1.7485 7.1305 6.1783 28 6 2.1443 6.5318 5.0044 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7806 0.8891 34 1 5.8318 3.8691 -0.1251 35 1 5.9853 2.3077 0.7151 36 1 5.8358 2.3529 -1.0580 37 1 3.4424 2.8352 2.0468 38 1 2.8105 4.7383 3.4360 39 1 2.9175 7.2752 1.7163 40 1 2.2907 9.2969 3.0274 41 1 1.5837 10.3508 5.1301 42 1 0.5522 12.8910 9.4198 43 1 1.5948 6.5317 7.0639 44 1 2.3010 5.4638 4.9680 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072966355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:35 Heat of formation + Delta-G solvation = -111.927085 kcal Electronic energy + Delta-G solvation = -26772.771063 eV Core-core repulsion = 22656.482534 eV Total energy + Delta-G solvation = -4116.288529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94216 -39.62741 -39.25472 -37.22845 -36.92072 -35.80431 -33.21169 -32.47644 -31.85320 -30.50309 -29.43101 -28.28915 -27.37196 -25.65341 -23.79894 -22.36580 -22.15028 -20.99295 -20.61720 -19.29874 -18.08018 -17.97262 -17.44362 -17.27868 -17.03810 -16.71132 -16.08385 -15.02625 -14.98780 -14.73275 -14.26775 -14.15789 -14.02582 -13.94801 -13.83640 -13.59246 -13.42910 -12.83320 -12.71815 -12.61127 -12.55302 -12.42312 -12.38328 -12.26396 -11.85465 -11.76146 -11.41527 -11.17264 -11.15514 -11.00700 -10.80744 -10.74068 -10.26037 -9.75153 -9.61224 -9.52586 -9.15573 -8.89161 -8.44397 -7.21023 -6.58399 -4.22210 1.04669 1.84791 2.05785 2.29091 2.52896 3.12969 3.16452 3.16883 3.30170 3.60445 4.10340 4.11765 4.36292 4.45899 4.62060 4.65634 4.73443 4.82177 4.88901 4.95131 4.96011 5.07682 5.11843 5.17562 5.21438 5.36287 5.45827 5.55845 5.63041 5.72844 5.90428 5.96523 6.01506 6.05790 6.32019 6.38060 6.49192 6.56371 6.70540 6.95696 7.11516 7.19597 7.38200 7.44208 7.55252 7.65038 7.86328 8.38645 8.75058 9.35559 10.47956 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.001889 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.688205 B =14821.851709 C =15593.544878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.487 6.487 5 C -0.123 4.123 6 C 0.154 3.846 7 H 0.097 0.903 8 C -0.163 4.163 9 N -0.724 5.724 10 C 0.563 3.437 11 O -0.556 6.556 12 C -0.274 4.274 13 C 0.032 3.968 14 C -0.187 4.187 15 C -0.038 4.038 16 C -0.229 4.229 17 C 0.173 3.827 18 O -0.203 6.203 19 C -0.392 4.392 20 H 0.111 0.889 21 C 0.065 3.935 22 N -0.868 5.868 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.199 4.199 28 C -0.046 4.046 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.283 0.717 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -24.891 -14.704 29.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.373 6.373 5 C -0.161 4.161 6 C 0.049 3.951 7 H 0.115 0.885 8 C -0.221 4.221 9 N -0.375 5.375 10 C 0.355 3.645 11 O -0.436 6.436 12 C -0.295 4.295 13 C 0.013 3.987 14 C -0.188 4.188 15 C -0.056 4.056 16 C -0.248 4.248 17 C 0.119 3.881 18 O -0.106 6.106 19 C -0.466 4.466 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.504 5.504 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.219 4.219 28 C -0.064 4.064 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.230 0.770 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.066 -23.962 -15.039 28.741 hybrid contribution -0.486 -0.435 1.095 1.274 sum 4.581 -24.398 -13.944 28.472 Atomic orbital electron populations 1.23273 0.76080 1.03669 1.02795 1.86486 1.23663 1.33607 1.84378 1.23749 0.92188 0.81542 0.73229 1.90780 1.66910 1.36019 1.43557 1.21804 0.88129 0.99251 1.06876 1.20681 0.95104 0.89916 0.89428 0.88514 1.22182 0.94249 1.03596 1.02071 1.45774 1.71105 1.08184 1.12480 1.18279 0.75901 0.81419 0.88906 1.90765 1.52738 1.63101 1.36993 1.22460 1.13608 0.96229 0.97157 1.22287 0.86672 0.94098 0.95686 1.18538 1.13129 0.93632 0.93501 1.21046 0.94375 0.93232 0.96951 1.21222 1.09401 1.01447 0.92780 1.19359 0.90806 0.91946 0.86027 1.83505 1.73097 1.23613 1.30421 1.20872 1.49732 0.76926 0.99118 0.87214 1.24537 0.95445 0.95186 0.98800 1.69617 1.44952 1.06393 1.29394 0.86157 0.78899 0.80553 0.81205 1.19656 1.20541 1.18225 1.20137 1.10541 0.92212 0.98975 1.20878 0.95718 0.98453 0.91370 0.88098 0.91724 0.91856 0.86176 0.87067 0.91151 0.92136 0.91474 0.77015 0.86045 0.85777 0.86517 0.84507 0.90692 0.86158 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -2.85 10.56 -39.25 -0.41 -3.27 16 3 C 0.45 3.96 7.82 36.01 0.28 4.24 16 4 O -0.49 -6.22 15.10 -18.75 -0.28 -6.50 16 5 C -0.12 -0.66 5.35 -27.88 -0.15 -0.81 16 6 C 0.15 1.31 2.14 -67.93 -0.15 1.16 16 7 H 0.10 1.10 7.39 -51.93 -0.38 0.72 16 8 C -0.16 -1.13 9.48 37.15 0.35 -0.78 16 9 N -0.72 -7.42 4.22 -55.25 -0.23 -7.66 16 10 C 0.56 8.02 7.70 -13.04 -0.10 7.92 16 11 O -0.56 -9.84 15.89 5.17 0.08 -9.76 16 12 C -0.27 -3.79 9.41 -37.51 -0.35 -4.14 16 13 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 14 C -0.19 -3.16 5.87 -105.03 -0.62 -3.78 16 15 C -0.04 -0.68 9.78 -39.15 -0.38 -1.06 16 16 C -0.23 -4.78 9.14 -39.47 -0.36 -5.14 16 17 C 0.17 3.83 6.66 -38.89 -0.26 3.58 16 18 O -0.20 -5.14 8.57 0.71 0.01 -5.13 16 19 C -0.39 -10.60 9.94 30.91 0.31 -10.29 16 20 H 0.11 3.03 5.41 -52.48 -0.28 2.74 16 21 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.87 -24.14 13.96 55.48 0.77 -23.37 16 23 Si 0.91 20.77 28.62 -169.99 -4.86 15.91 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 27 C -0.20 -3.77 9.97 -39.47 -0.39 -4.16 16 28 C -0.05 -0.76 9.40 -39.15 -0.37 -1.13 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 8.13 -51.92 -0.42 0.01 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 3.10 8.58 -40.82 -0.35 2.75 16 38 H 0.12 1.42 6.07 -52.48 -0.32 1.11 16 39 H 0.12 1.92 7.52 -52.48 -0.39 1.53 16 40 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.14 2.97 5.62 -52.49 -0.29 2.67 16 42 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 2.08 8.06 -52.48 -0.42 1.65 16 44 H 0.12 1.58 6.16 -52.49 -0.32 1.26 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -33.29 382.72 -6.44 -39.73 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.71 Total: 5.56 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.57 Total: -11.28 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.54 Total: -31.03 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.61 Total: -24.66 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.86 Total: 15.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.29 -6.44 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072966355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.197 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds