Wall clock time and date at job start Tue Mar 31 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00056 * 2 1 4 4 O 1.20827 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00049 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47226 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.47058 * 305.00270 * 6 5 3 8 8 C 1.52994 * 109.47247 * 184.99943 * 6 5 3 9 9 N 1.46502 * 109.46920 * 64.99928 * 6 5 3 10 10 C 1.34779 * 120.00004 * 204.99828 * 9 6 5 11 11 O 1.21718 * 119.99908 * 0.02562 * 10 9 6 12 12 C 1.46255 * 119.99865 * 180.02562 * 10 9 6 13 13 C 1.35018 * 120.00033 * 180.02562 * 12 10 9 14 14 C 1.46960 * 120.00382 * 179.97438 * 13 12 10 15 15 C 1.40026 * 120.10267 * 179.97438 * 14 13 12 16 16 C 1.37594 * 119.89660 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10071 * 0.27233 * 16 15 14 18 18 O 1.35579 * 119.89553 * 179.70771 * 17 16 15 19 19 C 1.34781 * 117.00320 * 354.44312 * 18 17 16 20 20 H 1.08005 * 119.99725 * 5.05569 * 19 18 17 21 21 C 1.38715 * 120.00342 * 185.05925 * 19 18 17 22 22 N 1.31503 * 120.00014 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99770 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46728 * 89.99874 * 23 21 19 25 25 H 1.48502 * 109.47119 * 210.00016 * 23 21 19 26 26 H 1.48502 * 109.47082 * 330.00327 * 23 21 19 27 27 C 1.39173 * 120.20477 * 359.44770 * 17 16 15 28 28 C 1.37597 * 120.09926 * 0.55723 * 27 17 16 29 29 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46812 * 299.99676 * 1 2 3 31 31 H 1.09000 * 109.47429 * 59.99452 * 1 2 3 32 32 H 1.08997 * 109.47022 * 60.00611 * 5 3 2 33 33 H 1.09000 * 109.47314 * 299.99838 * 5 3 2 34 34 H 1.09003 * 109.47065 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.47359 * 300.00143 * 8 6 5 36 36 H 1.09005 * 109.46948 * 60.00449 * 8 6 5 37 37 H 0.97004 * 120.00347 * 25.00647 * 9 6 5 38 38 H 1.08003 * 120.00048 * 359.97438 * 12 10 9 39 39 H 1.08003 * 119.99918 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.05214 * 359.95709 * 15 14 13 41 41 H 1.08001 * 119.95149 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99590 * 179.97438 * 22 21 19 43 43 H 1.08004 * 119.95204 * 180.27325 * 27 17 16 44 44 H 1.08000 * 120.05069 * 179.74232 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 1 3.5376 3.2582 -0.8410 8 6 5.5227 2.8238 -0.1261 9 7 3.5794 3.3750 1.2526 10 6 3.3826 4.7075 1.3014 11 8 3.5541 5.3848 0.3047 12 6 2.9630 5.3394 2.5518 13 6 2.7654 6.6742 2.6006 14 6 2.3433 7.3092 3.8569 15 6 2.1382 8.6933 3.9099 16 6 1.7425 9.2833 5.0883 17 6 1.5515 8.5073 6.2277 18 8 1.1673 9.0939 7.3881 19 6 1.0998 10.4399 7.4004 20 1 1.2667 10.9973 6.4905 21 6 0.8162 11.1095 8.5817 22 7 0.7509 12.4228 8.5938 23 14 0.5270 10.1454 10.1554 24 1 1.8183 9.9553 10.8638 25 1 -0.4115 10.8943 11.0294 26 1 -0.0556 8.8202 9.8241 27 6 1.7485 7.1305 6.1783 28 6 2.1443 6.5318 5.0044 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7806 0.8891 34 1 5.8318 3.8691 -0.1251 35 1 5.9853 2.3077 0.7151 36 1 5.8358 2.3529 -1.0580 37 1 3.4424 2.8352 2.0468 38 1 2.8105 4.7383 3.4360 39 1 2.9175 7.2752 1.7163 40 1 2.2907 9.2969 3.0274 41 1 1.5837 10.3508 5.1301 42 1 0.5522 12.8910 9.4198 43 1 1.5948 6.5317 7.0639 44 1 2.3010 5.4638 4.9680 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072966355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:34 Heat of formation + Delta-G solvation = -133.291582 kcal Electronic energy + Delta-G solvation = -26773.697497 eV Core-core repulsion = 22656.482534 eV Total energy + Delta-G solvation = -4117.214963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.64325 -40.99952 -40.54850 -38.65140 -37.79007 -36.65471 -34.76643 -34.20939 -32.74967 -32.01637 -30.12148 -29.60687 -27.86544 -27.45399 -25.01682 -23.82962 -23.13283 -22.07835 -21.45220 -20.65106 -19.68504 -19.15486 -18.61930 -18.38049 -17.75058 -17.46993 -16.97010 -16.63272 -16.35444 -15.81733 -15.80387 -15.63078 -15.45373 -15.03292 -14.77791 -14.45485 -14.38230 -14.26285 -14.07379 -14.03514 -13.50057 -13.35008 -13.21219 -13.04427 -12.93958 -12.85443 -12.72998 -12.62840 -12.36255 -12.02201 -11.94369 -11.78944 -11.51928 -11.31978 -11.16126 -10.93266 -10.67707 -10.06123 -9.93454 -8.74988 -8.54165 -6.26081 -0.27981 0.53392 1.11264 1.20995 1.31992 1.37187 1.52067 1.76441 2.25884 2.27931 2.41317 2.79874 2.99109 3.14150 3.54646 3.76834 3.85081 3.90869 4.03172 4.17490 4.27183 4.29300 4.31387 4.32667 4.38903 4.45055 4.57985 4.62375 4.68307 4.72248 4.81952 4.83534 5.04177 5.11273 5.20576 5.26849 5.34167 5.38278 5.43726 5.55230 5.59628 5.69186 5.78867 5.82337 6.13159 6.62344 6.75462 6.78796 7.34217 7.49703 8.56669 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.001889 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.688205 B =14821.851709 C =15593.544878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.451 3.549 4 O -0.536 6.536 5 C -0.111 4.111 6 C 0.149 3.851 7 H 0.062 0.938 8 C -0.156 4.156 9 N -0.707 5.707 10 C 0.552 3.448 11 O -0.596 6.596 12 C -0.237 4.237 13 C 0.006 3.994 14 C -0.159 4.159 15 C -0.047 4.047 16 C -0.243 4.243 17 C 0.136 3.864 18 O -0.233 6.233 19 C -0.404 4.404 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.917 5.917 23 Si 0.973 3.027 24 H -0.264 1.264 25 H -0.268 1.268 26 H -0.260 1.260 27 C -0.193 4.193 28 C -0.041 4.041 29 H 0.131 0.869 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.412 0.588 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.114 0.886 42 H 0.287 0.713 43 H 0.140 0.860 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.679 -30.373 -15.384 34.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.295 3.705 4 O -0.425 6.425 5 C -0.149 4.149 6 C 0.044 3.956 7 H 0.080 0.920 8 C -0.214 4.214 9 N -0.358 5.358 10 C 0.343 3.657 11 O -0.479 6.479 12 C -0.258 4.258 13 C -0.014 4.014 14 C -0.160 4.160 15 C -0.065 4.065 16 C -0.262 4.262 17 C 0.086 3.914 18 O -0.139 6.139 19 C -0.480 4.480 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.557 5.557 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.184 1.184 27 C -0.212 4.212 28 C -0.058 4.058 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.248 0.752 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.158 0.842 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.467 -29.545 -15.755 34.102 hybrid contribution -0.768 0.830 0.782 1.375 sum 5.699 -28.715 -14.973 32.882 Atomic orbital electron populations 1.23461 0.75385 1.05443 1.02087 1.86493 1.24432 1.33083 1.83888 1.24433 0.93421 0.81011 0.71620 1.90773 1.68184 1.37523 1.46067 1.21880 0.85698 0.97171 1.10102 1.20804 0.96046 0.91449 0.87266 0.92004 1.22117 0.92741 1.02119 1.04384 1.45718 1.69092 1.07018 1.13930 1.18463 0.76021 0.82710 0.88469 1.90763 1.54469 1.64345 1.38325 1.22831 1.09233 0.95802 0.97920 1.22151 0.89394 0.94949 0.94899 1.18817 1.09755 0.93075 0.94343 1.21281 0.94234 0.94415 0.96600 1.21220 1.10362 1.00625 0.93976 1.19924 0.92284 0.93560 0.85655 1.83460 1.76483 1.22096 1.31837 1.20755 1.50509 0.78168 0.98582 0.89916 1.25349 0.95471 0.96097 1.01897 1.69705 1.47776 1.07777 1.30395 0.85192 0.79129 0.78927 0.77332 1.18886 1.19250 1.18383 1.20486 1.09220 0.90731 1.00716 1.21335 0.94063 1.00554 0.89865 0.85119 0.92449 0.92621 0.82926 0.83559 0.94303 0.89909 0.89114 0.75172 0.82828 0.86287 0.84499 0.86832 0.90371 0.84200 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -4.58 10.56 -51.37 -0.54 -5.13 16 3 C 0.45 6.62 7.82 71.24 0.56 7.18 16 4 O -0.54 -12.90 15.10 21.96 0.33 -12.57 16 5 C -0.11 -0.70 5.35 29.85 0.16 -0.54 16 6 C 0.15 2.10 2.14 44.99 0.10 2.19 16 7 H 0.06 1.35 7.39 -2.39 -0.02 1.33 16 8 C -0.16 -1.63 9.48 71.98 0.68 -0.95 16 9 N -0.71 -12.12 4.22 -446.92 -1.88 -14.01 16 10 C 0.55 14.37 7.70 86.33 0.66 15.04 16 11 O -0.60 -20.63 15.89 -4.41 -0.07 -20.70 16 12 C -0.24 -5.65 9.41 23.61 0.22 -5.43 16 13 C 0.01 0.17 9.45 23.82 0.23 0.39 16 14 C -0.16 -5.00 5.87 -20.13 -0.12 -5.12 16 15 C -0.05 -1.69 9.78 22.55 0.22 -1.47 16 16 C -0.24 -10.58 9.14 22.34 0.20 -10.38 16 17 C 0.14 6.19 6.66 22.72 0.15 6.34 16 18 O -0.23 -12.25 8.57 -20.36 -0.17 -12.43 16 19 C -0.40 -23.35 9.94 67.93 0.68 -22.68 16 20 H 0.08 5.03 5.41 -2.91 -0.02 5.01 16 21 C 0.01 0.64 5.49 84.86 0.47 1.11 16 22 N -0.92 -53.94 13.96 21.62 0.30 -53.63 16 23 Si 0.97 44.15 28.62 68.60 1.96 46.11 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 27 C -0.19 -6.91 9.97 22.34 0.22 -6.69 16 28 C -0.04 -1.19 9.40 22.55 0.21 -0.97 16 29 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.68 8.13 -2.38 -0.02 0.66 16 31 H 0.05 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.41 4.48 8.58 -92.71 -0.80 3.68 16 38 H 0.15 2.63 6.07 -2.91 -0.02 2.61 16 39 H 0.12 3.54 7.52 -2.91 -0.02 3.52 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.11 5.43 5.62 -2.91 -0.02 5.41 16 42 H 0.29 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 44 H 0.17 3.31 6.16 -2.91 -0.02 3.30 16 Total: -1.00 -79.62 382.72 6.01 -73.61 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.25 Total: 19.22 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.84 Total: -20.48 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -1.58 Total: -67.64 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.46 Total: -50.82 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.96 Total: 46.11 kcal Total: -79.62 6.01 -73.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072966355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.677 kcal (2) G-P(sol) polarization free energy of solvation -79.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds