Wall clock time and date at job start Tue Mar 31 2020 18:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00016 * 2 1 4 4 O 1.20823 * 120.00205 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99910 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46824 * 180.02562 * 5 3 2 7 7 H 1.08990 * 109.47433 * 54.99884 * 6 5 3 8 8 C 1.53002 * 109.46930 * 175.00018 * 6 5 3 9 9 N 1.46502 * 109.47105 * 294.99530 * 6 5 3 10 10 C 1.34769 * 120.00008 * 155.00431 * 9 6 5 11 11 O 1.21723 * 120.00323 * 359.97438 * 10 9 6 12 12 C 1.46260 * 120.00205 * 180.02562 * 10 9 6 13 13 C 1.35019 * 119.99953 * 179.97438 * 12 10 9 14 14 C 1.46960 * 119.99966 * 179.97438 * 13 12 10 15 15 C 1.40026 * 120.10276 * 179.97438 * 14 13 12 16 16 C 1.37594 * 119.89669 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10072 * 0.25350 * 16 15 14 18 18 O 1.35579 * 119.89547 * 179.74679 * 17 16 15 19 19 C 1.34785 * 117.00142 * 354.44508 * 18 17 16 20 20 H 1.08005 * 119.99845 * 5.06100 * 19 18 17 21 21 C 1.38717 * 119.99804 * 185.06117 * 19 18 17 22 22 N 1.31506 * 119.99455 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00326 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47350 * 89.99913 * 23 21 19 25 25 H 1.48497 * 109.47507 * 210.00388 * 23 21 19 26 26 H 1.48509 * 109.47209 * 330.00228 * 23 21 19 27 27 C 1.39173 * 120.20483 * 359.49531 * 17 16 15 28 28 C 1.37597 * 120.09959 * 0.50464 * 27 17 16 29 29 H 1.09001 * 109.47489 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46981 * 299.99566 * 1 2 3 31 31 H 1.09003 * 109.47177 * 60.00006 * 1 2 3 32 32 H 1.08995 * 109.47521 * 59.99996 * 5 3 2 33 33 H 1.08995 * 109.46988 * 299.99442 * 5 3 2 34 34 H 1.09001 * 109.47560 * 59.99361 * 8 6 5 35 35 H 1.08998 * 109.47139 * 180.02562 * 8 6 5 36 36 H 1.09010 * 109.47063 * 299.99895 * 8 6 5 37 37 H 0.97000 * 119.99537 * 335.00153 * 9 6 5 38 38 H 1.07994 * 119.99446 * 359.97438 * 12 10 9 39 39 H 1.08003 * 120.00342 * 359.97438 * 13 12 10 40 40 H 1.07997 * 120.04753 * 359.96267 * 15 14 13 41 41 H 1.08001 * 119.95149 * 179.97438 * 16 15 14 42 42 H 0.97001 * 119.99729 * 179.97438 * 22 21 19 43 43 H 1.08004 * 119.95191 * 180.25600 * 27 17 16 44 44 H 1.08000 * 120.05078 * 179.77151 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0000 2.7421 0.0002 7 1 3.5382 3.2571 0.8424 8 6 5.5228 2.8236 0.1253 9 7 3.5783 3.3766 -1.2511 10 6 3.3815 4.7091 -1.2980 11 8 3.5537 5.3852 -0.3006 12 6 2.9599 5.3426 -2.5470 13 6 2.7622 6.6774 -2.5938 14 6 2.3391 7.3140 -3.8490 15 6 2.1330 8.6981 -3.8998 16 6 1.7374 9.2897 -5.0774 17 6 1.5370 8.5140 -6.2154 18 8 1.1423 9.1007 -7.3722 19 6 0.8513 10.4159 -7.3231 20 1 1.0152 10.9715 -6.4116 21 6 0.3412 11.0556 -8.4433 22 7 0.0578 12.3389 -8.3955 23 14 0.0583 10.0947 -10.0199 24 1 -1.3175 9.5360 -10.0191 25 1 0.2251 10.9979 -11.1868 26 1 1.0426 8.9861 -10.1074 27 6 1.7457 7.1388 -6.1710 28 6 2.1413 6.5383 -4.9979 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9557 0.7809 -0.8908 33 1 3.9563 0.7806 0.8892 34 1 5.9847 2.3085 -0.7169 35 1 5.8318 3.8689 0.1263 36 1 5.8366 2.3514 1.0563 37 1 3.4407 2.8377 -2.0458 38 1 2.8067 4.7426 -3.4318 39 1 2.9150 7.2773 -1.7088 40 1 2.2841 9.3001 -3.0160 41 1 1.5778 10.3571 -5.1174 42 1 -0.2985 12.7863 -9.1789 43 1 1.5930 6.5413 -7.0577 44 1 2.2995 5.4705 -4.9634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072966356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:38 Heat of formation + Delta-G solvation = -111.910963 kcal Electronic energy + Delta-G solvation = -26776.761394 eV Core-core repulsion = 22660.473563 eV Total energy + Delta-G solvation = -4116.287830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.94128 -39.62693 -39.25438 -37.22763 -36.91980 -35.80346 -33.21132 -32.47602 -31.85391 -30.50308 -29.43039 -28.28884 -27.37052 -25.65304 -23.79893 -22.36551 -22.14974 -20.99224 -20.61745 -19.29884 -18.07982 -17.97104 -17.44367 -17.27791 -17.03713 -16.71044 -16.08309 -15.02614 -14.98746 -14.73459 -14.25939 -14.16183 -14.02624 -13.94138 -13.84557 -13.58994 -13.42771 -12.83472 -12.71660 -12.60973 -12.55419 -12.42074 -12.38183 -12.26503 -11.85273 -11.76252 -11.41761 -11.17067 -11.15378 -11.00714 -10.80577 -10.74063 -10.26011 -9.75109 -9.61222 -9.52549 -9.15576 -8.89114 -8.44393 -7.21005 -6.58384 -4.22190 1.04691 1.84998 2.05786 2.29284 2.52905 3.12950 3.16502 3.16991 3.30099 3.60456 4.10373 4.11780 4.36411 4.45884 4.62077 4.65647 4.73729 4.82501 4.88935 4.95240 4.95971 5.07664 5.11824 5.17803 5.21490 5.36151 5.45846 5.55867 5.63053 5.72864 5.90262 5.96536 6.01716 6.05806 6.32025 6.38026 6.49207 6.56384 6.70555 6.95704 7.11528 7.19608 7.38400 7.44227 7.55299 7.65059 7.86359 8.38658 8.75064 9.35572 10.47993 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001902 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.371922 B =14721.241070 C =15535.762238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.487 6.487 5 C -0.123 4.123 6 C 0.154 3.846 7 H 0.097 0.903 8 C -0.163 4.163 9 N -0.724 5.724 10 C 0.563 3.437 11 O -0.556 6.556 12 C -0.273 4.273 13 C 0.032 3.968 14 C -0.187 4.187 15 C -0.038 4.038 16 C -0.229 4.229 17 C 0.173 3.827 18 O -0.203 6.203 19 C -0.392 4.392 20 H 0.111 0.889 21 C 0.065 3.935 22 N -0.868 5.868 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.199 4.199 28 C -0.046 4.046 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.283 0.717 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -24.740 14.339 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.373 6.373 5 C -0.161 4.161 6 C 0.049 3.951 7 H 0.115 0.885 8 C -0.221 4.221 9 N -0.375 5.375 10 C 0.355 3.645 11 O -0.436 6.436 12 C -0.294 4.294 13 C 0.013 3.987 14 C -0.188 4.188 15 C -0.056 4.056 16 C -0.248 4.248 17 C 0.119 3.881 18 O -0.106 6.106 19 C -0.466 4.466 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.504 5.504 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.219 4.219 28 C -0.064 4.064 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.230 0.770 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.310 -23.813 14.677 28.676 hybrid contribution -0.548 -0.443 -1.078 1.287 sum 5.763 -24.256 13.599 28.399 Atomic orbital electron populations 1.23273 0.76075 1.03670 1.02799 1.86486 1.23667 1.33607 1.84378 1.23745 0.92187 0.81545 0.73237 1.90780 1.66908 1.36019 1.43548 1.21802 0.88137 0.99246 1.06875 1.20683 0.95092 0.89896 0.89461 0.88514 1.22183 0.94250 1.03590 1.02071 1.45770 1.71072 1.08180 1.12508 1.18279 0.75909 0.81419 0.88901 1.90766 1.52757 1.63180 1.36902 1.22460 1.13586 0.96212 0.97191 1.22287 0.86692 0.94085 0.95682 1.18538 1.13122 0.93654 0.93484 1.21045 0.94356 0.93242 0.96961 1.21222 1.09233 1.01396 0.92998 1.19359 0.91518 0.91697 0.85566 1.83506 1.72518 1.26027 1.28587 1.20874 1.43296 0.80298 1.02178 0.87212 1.24538 0.95062 0.95353 0.99026 1.69618 1.40554 1.08635 1.31552 0.86154 0.79760 0.80044 0.80839 1.19666 1.20541 1.18223 1.20137 1.10728 0.92026 0.98973 1.20879 0.95670 0.98467 0.91406 0.88100 0.91855 0.91718 0.87062 0.86185 0.92133 0.91154 0.91480 0.77014 0.86047 0.85776 0.86518 0.84506 0.90693 0.86158 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -2.86 10.56 -39.24 -0.41 -3.28 16 3 C 0.45 3.97 7.82 36.01 0.28 4.25 16 4 O -0.49 -6.23 15.10 -18.75 -0.28 -6.52 16 5 C -0.12 -0.66 5.35 -27.88 -0.15 -0.81 16 6 C 0.15 1.31 2.14 -67.93 -0.15 1.16 16 7 H 0.10 1.10 7.39 -51.93 -0.38 0.72 16 8 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 9 N -0.72 -7.42 4.21 -55.25 -0.23 -7.66 16 10 C 0.56 8.02 7.70 -13.04 -0.10 7.92 16 11 O -0.56 -9.84 15.89 5.17 0.08 -9.76 16 12 C -0.27 -3.79 9.41 -37.50 -0.35 -4.14 16 13 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 14 C -0.19 -3.16 5.87 -105.03 -0.62 -3.78 16 15 C -0.04 -0.68 9.78 -39.15 -0.38 -1.06 16 16 C -0.23 -4.78 9.14 -39.47 -0.36 -5.14 16 17 C 0.17 3.83 6.66 -38.89 -0.26 3.58 16 18 O -0.20 -5.14 8.57 0.70 0.01 -5.13 16 19 C -0.39 -10.60 9.94 30.91 0.31 -10.29 16 20 H 0.11 3.03 5.41 -52.48 -0.28 2.74 16 21 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 22 N -0.87 -24.16 13.96 55.48 0.77 -23.38 16 23 Si 0.91 20.79 28.62 -169.99 -4.86 15.92 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.20 -3.77 9.97 -39.47 -0.39 -4.16 16 28 C -0.05 -0.76 9.40 -39.15 -0.37 -1.13 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 32 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.40 3.10 8.58 -40.82 -0.35 2.75 16 38 H 0.12 1.42 6.06 -52.49 -0.32 1.11 16 39 H 0.12 1.92 7.52 -52.48 -0.39 1.53 16 40 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.14 2.97 5.62 -52.49 -0.29 2.67 16 42 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 2.08 8.06 -52.48 -0.42 1.65 16 44 H 0.12 1.58 6.16 -52.49 -0.32 1.26 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -33.30 382.71 -6.44 -39.74 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.71 Total: 5.56 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.57 Total: -11.27 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.54 Total: -31.04 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.61 Total: -24.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.86 Total: 15.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.30 -6.44 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072966356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.166 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds