Wall clock time and date at job start Tue Mar 31 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00016 * 2 1 4 4 O 1.20823 * 120.00205 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99910 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46824 * 180.02562 * 5 3 2 7 7 H 1.08990 * 109.47433 * 54.99884 * 6 5 3 8 8 C 1.53002 * 109.46930 * 175.00018 * 6 5 3 9 9 N 1.46502 * 109.47105 * 294.99530 * 6 5 3 10 10 C 1.34769 * 120.00008 * 155.00431 * 9 6 5 11 11 O 1.21723 * 120.00323 * 359.97438 * 10 9 6 12 12 C 1.46260 * 120.00205 * 180.02562 * 10 9 6 13 13 C 1.35019 * 119.99953 * 179.97438 * 12 10 9 14 14 C 1.46960 * 119.99966 * 179.97438 * 13 12 10 15 15 C 1.40026 * 120.10276 * 179.97438 * 14 13 12 16 16 C 1.37594 * 119.89669 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10072 * 0.25350 * 16 15 14 18 18 O 1.35579 * 119.89547 * 179.74679 * 17 16 15 19 19 C 1.34785 * 117.00142 * 354.44508 * 18 17 16 20 20 H 1.08005 * 119.99845 * 5.06100 * 19 18 17 21 21 C 1.38717 * 119.99804 * 185.06117 * 19 18 17 22 22 N 1.31506 * 119.99455 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00326 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47350 * 89.99913 * 23 21 19 25 25 H 1.48497 * 109.47507 * 210.00388 * 23 21 19 26 26 H 1.48509 * 109.47209 * 330.00228 * 23 21 19 27 27 C 1.39173 * 120.20483 * 359.49531 * 17 16 15 28 28 C 1.37597 * 120.09959 * 0.50464 * 27 17 16 29 29 H 1.09001 * 109.47489 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46981 * 299.99566 * 1 2 3 31 31 H 1.09003 * 109.47177 * 60.00006 * 1 2 3 32 32 H 1.08995 * 109.47521 * 59.99996 * 5 3 2 33 33 H 1.08995 * 109.46988 * 299.99442 * 5 3 2 34 34 H 1.09001 * 109.47560 * 59.99361 * 8 6 5 35 35 H 1.08998 * 109.47139 * 180.02562 * 8 6 5 36 36 H 1.09010 * 109.47063 * 299.99895 * 8 6 5 37 37 H 0.97000 * 119.99537 * 335.00153 * 9 6 5 38 38 H 1.07994 * 119.99446 * 359.97438 * 12 10 9 39 39 H 1.08003 * 120.00342 * 359.97438 * 13 12 10 40 40 H 1.07997 * 120.04753 * 359.96267 * 15 14 13 41 41 H 1.08001 * 119.95149 * 179.97438 * 16 15 14 42 42 H 0.97001 * 119.99729 * 179.97438 * 22 21 19 43 43 H 1.08004 * 119.95191 * 180.25600 * 27 17 16 44 44 H 1.08000 * 120.05078 * 179.77151 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0000 2.7421 0.0002 7 1 3.5382 3.2571 0.8424 8 6 5.5228 2.8236 0.1253 9 7 3.5783 3.3766 -1.2511 10 6 3.3815 4.7091 -1.2980 11 8 3.5537 5.3852 -0.3006 12 6 2.9599 5.3426 -2.5470 13 6 2.7622 6.6774 -2.5938 14 6 2.3391 7.3140 -3.8490 15 6 2.1330 8.6981 -3.8998 16 6 1.7374 9.2897 -5.0774 17 6 1.5370 8.5140 -6.2154 18 8 1.1423 9.1007 -7.3722 19 6 0.8513 10.4159 -7.3231 20 1 1.0152 10.9715 -6.4116 21 6 0.3412 11.0556 -8.4433 22 7 0.0578 12.3389 -8.3955 23 14 0.0583 10.0947 -10.0199 24 1 -1.3175 9.5360 -10.0191 25 1 0.2251 10.9979 -11.1868 26 1 1.0426 8.9861 -10.1074 27 6 1.7457 7.1388 -6.1710 28 6 2.1413 6.5383 -4.9979 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9557 0.7809 -0.8908 33 1 3.9563 0.7806 0.8892 34 1 5.9847 2.3085 -0.7169 35 1 5.8318 3.8689 0.1263 36 1 5.8366 2.3514 1.0563 37 1 3.4407 2.8377 -2.0458 38 1 2.8067 4.7426 -3.4318 39 1 2.9150 7.2773 -1.7088 40 1 2.2841 9.3001 -3.0160 41 1 1.5778 10.3571 -5.1174 42 1 -0.2985 12.7863 -9.1789 43 1 1.5930 6.5413 -7.0577 44 1 2.2995 5.4705 -4.9634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072966356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:37 Heat of formation + Delta-G solvation = -133.292768 kcal Electronic energy + Delta-G solvation = -26777.688578 eV Core-core repulsion = 22660.473563 eV Total energy + Delta-G solvation = -4117.215015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64428 -40.99949 -40.54823 -38.65139 -37.79044 -36.65464 -34.76659 -34.20941 -32.75053 -32.01651 -30.12174 -29.60670 -27.86595 -27.45430 -25.01689 -23.82985 -23.13297 -22.07843 -21.45259 -20.65154 -19.68530 -19.15531 -18.61963 -18.38046 -17.75139 -17.47064 -16.97014 -16.63289 -16.35445 -15.86380 -15.73960 -15.64387 -15.46018 -15.03192 -14.77857 -14.45420 -14.38327 -14.26252 -14.07334 -14.03732 -13.49652 -13.35448 -13.21267 -13.04396 -12.93961 -12.85205 -12.73258 -12.62813 -12.36210 -12.02266 -11.94324 -11.79019 -11.51980 -11.32010 -11.16198 -10.93217 -10.67738 -10.06111 -9.93459 -8.74989 -8.54254 -6.26151 -0.27973 0.53383 1.11259 1.21001 1.31938 1.37137 1.51980 1.76427 2.25796 2.27914 2.41376 2.79815 2.98986 3.14269 3.54619 3.76819 3.85093 3.90877 4.03178 4.17454 4.27185 4.29253 4.31374 4.32659 4.38887 4.45058 4.58015 4.62377 4.68329 4.72219 4.81944 4.83519 5.04267 5.11278 5.20580 5.26853 5.34174 5.38253 5.43727 5.55206 5.59618 5.69167 5.78860 5.82309 6.13141 6.62393 6.75444 6.78709 7.34233 7.49647 8.56614 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001902 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.371922 B =14721.241070 C =15535.762238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.451 3.549 4 O -0.536 6.536 5 C -0.111 4.111 6 C 0.149 3.851 7 H 0.062 0.938 8 C -0.155 4.155 9 N -0.707 5.707 10 C 0.552 3.448 11 O -0.596 6.596 12 C -0.237 4.237 13 C 0.006 3.994 14 C -0.159 4.159 15 C -0.047 4.047 16 C -0.243 4.243 17 C 0.136 3.864 18 O -0.233 6.233 19 C -0.404 4.404 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.917 5.917 23 Si 0.973 3.027 24 H -0.265 1.265 25 H -0.267 1.267 26 H -0.259 1.259 27 C -0.193 4.193 28 C -0.041 4.041 29 H 0.131 0.869 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.412 0.588 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.114 0.886 42 H 0.287 0.713 43 H 0.140 0.860 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -30.212 14.981 34.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.295 3.705 4 O -0.425 6.425 5 C -0.148 4.148 6 C 0.044 3.956 7 H 0.080 0.920 8 C -0.214 4.214 9 N -0.357 5.357 10 C 0.343 3.657 11 O -0.479 6.479 12 C -0.258 4.258 13 C -0.014 4.014 14 C -0.160 4.160 15 C -0.065 4.065 16 C -0.262 4.262 17 C 0.086 3.914 18 O -0.139 6.139 19 C -0.480 4.480 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.557 5.557 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.192 1.192 26 H -0.183 1.183 27 C -0.211 4.211 28 C -0.058 4.058 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.248 0.752 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.158 0.842 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.830 -29.385 15.355 34.067 hybrid contribution -0.843 0.822 -0.759 1.401 sum 6.987 -28.563 14.596 32.828 Atomic orbital electron populations 1.23459 0.75390 1.05442 1.02083 1.86493 1.24426 1.33086 1.83888 1.24434 0.93427 0.81010 0.71622 1.90772 1.68187 1.37526 1.46065 1.21879 0.85690 0.97173 1.10106 1.20806 0.96048 0.91422 0.87295 0.92013 1.22119 0.92726 1.02122 1.04388 1.45714 1.69060 1.07013 1.13957 1.18463 0.76030 0.82712 0.88462 1.90764 1.54487 1.64423 1.38236 1.22830 1.09215 0.95783 0.97953 1.22151 0.89406 0.94936 0.94902 1.18818 1.09746 0.93095 0.94330 1.21280 0.94235 0.94420 0.96598 1.21220 1.10190 1.00571 0.94200 1.19924 0.92740 0.93348 0.85414 1.83461 1.75705 1.24717 1.29991 1.20757 1.44116 0.81491 1.01648 0.89917 1.25351 0.95026 0.96275 1.02178 1.69706 1.43135 1.10106 1.32718 0.85189 0.79607 0.78639 0.77133 1.18990 1.19211 1.18315 1.20487 1.09412 0.90554 1.00695 1.21335 0.94043 1.00559 0.89880 0.85120 0.92628 0.92452 0.83543 0.82933 0.89894 0.94294 0.89123 0.75171 0.82830 0.86287 0.84502 0.86834 0.90371 0.84196 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -4.60 10.56 -51.35 -0.54 -5.15 16 3 C 0.45 6.64 7.82 71.24 0.56 7.20 16 4 O -0.54 -12.95 15.10 21.97 0.33 -12.61 16 5 C -0.11 -0.70 5.35 29.85 0.16 -0.54 16 6 C 0.15 2.09 2.14 44.99 0.10 2.19 16 7 H 0.06 1.35 7.39 -2.39 -0.02 1.33 16 8 C -0.16 -1.62 9.48 71.98 0.68 -0.94 16 9 N -0.71 -12.12 4.21 -446.91 -1.88 -14.00 16 10 C 0.55 14.37 7.70 86.33 0.66 15.04 16 11 O -0.60 -20.63 15.89 -4.42 -0.07 -20.70 16 12 C -0.24 -5.65 9.41 23.62 0.22 -5.43 16 13 C 0.01 0.17 9.45 23.82 0.23 0.39 16 14 C -0.16 -5.00 5.87 -20.13 -0.12 -5.12 16 15 C -0.05 -1.69 9.78 22.55 0.22 -1.47 16 16 C -0.24 -10.58 9.14 22.34 0.20 -10.38 16 17 C 0.14 6.18 6.66 22.72 0.15 6.34 16 18 O -0.23 -12.25 8.57 -20.40 -0.17 -12.43 16 19 C -0.40 -23.36 9.94 67.93 0.68 -22.69 16 20 H 0.08 5.03 5.41 -2.91 -0.02 5.01 16 21 C 0.01 0.63 5.49 84.86 0.47 1.10 16 22 N -0.92 -53.98 13.96 21.62 0.30 -53.68 16 23 Si 0.97 44.18 28.62 68.60 1.96 46.14 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 27 C -0.19 -6.91 9.97 22.34 0.22 -6.69 16 28 C -0.04 -1.19 9.40 22.55 0.21 -0.97 16 29 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.41 4.48 8.58 -92.71 -0.80 3.68 16 38 H 0.15 2.63 6.06 -2.91 -0.02 2.61 16 39 H 0.12 3.54 7.52 -2.91 -0.02 3.52 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.11 5.43 5.62 -2.91 -0.02 5.41 16 42 H 0.29 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 44 H 0.17 3.31 6.16 -2.91 -0.02 3.29 16 Total: -1.00 -79.68 382.71 6.01 -73.67 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.25 Total: 19.22 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 5.84 Total: -20.47 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.58 Total: -67.68 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.46 Total: -50.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.96 Total: 46.14 kcal Total: -79.68 6.01 -73.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072966356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.627 kcal (2) G-P(sol) polarization free energy of solvation -79.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds