Wall clock time and date at job start Tue Mar 31 2020 18:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47412 * 2 1 4 4 C 1.50701 * 109.47175 * 119.99453 * 2 1 3 5 5 H 1.08000 * 119.99897 * 119.99515 * 4 2 1 6 6 C 1.37874 * 120.00171 * 300.00593 * 4 2 1 7 7 N 1.31515 * 119.99984 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00024 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47139 * 59.99726 * 8 6 4 10 10 H 1.48498 * 109.47042 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47292 * 299.99706 * 8 6 4 12 12 N 1.46901 * 109.47393 * 239.99813 * 2 1 3 13 13 C 1.46907 * 110.99396 * 306.04866 * 12 2 1 14 14 C 1.46895 * 111.00083 * 69.99996 * 12 2 1 15 15 N 1.46498 * 109.47320 * 170.00175 * 14 12 2 16 16 N 1.40158 * 126.23730 * 90.02520 * 15 14 12 17 17 C 1.30353 * 108.04076 * 180.02562 * 16 15 14 18 18 C 1.47964 * 125.73176 * 179.97438 * 17 16 15 19 19 C 1.39939 * 120.92049 * 161.38606 * 18 17 16 20 20 C 1.37948 * 118.99780 * 179.73096 * 19 18 17 21 21 N 1.31937 * 120.89861 * 0.55075 * 20 19 18 22 22 C 1.31937 * 122.04733 * 359.72011 * 21 20 19 23 23 C 1.37945 * 120.89760 * 359.97438 * 22 21 20 24 24 N 1.38127 * 108.53185 * 359.97438 * 17 16 15 25 25 C 1.46496 * 125.86838 * 179.97438 * 24 17 16 26 26 C 1.34795 * 108.26522 * 359.73595 * 24 17 16 27 27 S 1.71205 * 126.17704 * 180.26800 * 26 24 17 28 28 H 1.09003 * 109.47113 * 300.00445 * 1 2 3 29 29 H 1.09000 * 109.46907 * 59.99757 * 1 2 3 30 30 H 1.08990 * 109.47268 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99958 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47437 * 59.99937 * 13 12 2 33 33 H 1.09004 * 109.46506 * 180.02562 * 13 12 2 34 34 H 1.08998 * 109.47119 * 299.99429 * 13 12 2 35 35 H 1.09005 * 109.47224 * 290.00274 * 14 12 2 36 36 H 1.09000 * 109.47079 * 50.00034 * 14 12 2 37 37 H 1.08002 * 120.49497 * 359.97164 * 19 18 17 38 38 H 1.08002 * 119.54722 * 180.29270 * 20 19 18 39 39 H 1.08001 * 119.55268 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.50172 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.46741 * 83.73047 * 25 24 17 42 42 H 1.08993 * 109.47697 * 203.73440 * 25 24 17 43 43 H 1.08994 * 109.47186 * 323.74022 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8268 -0.4196 5.2205 11 1 1.8258 -2.5200 4.0079 12 7 2.0197 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3077 14 6 1.7530 0.0971 -2.4090 15 7 2.4573 -0.4993 -3.5467 16 7 1.9529 -1.4800 -4.4117 17 6 2.8735 -1.7529 -5.2933 18 6 2.7530 -2.7362 -6.3924 19 6 3.6122 -2.6899 -7.4960 20 6 3.4682 -3.6297 -8.4955 21 7 2.5304 -4.5551 -8.4254 22 6 1.6965 -4.6308 -7.4058 23 6 1.7735 -3.7350 -6.3596 24 7 3.9803 -0.9699 -5.0290 25 6 5.2336 -0.9714 -5.7874 26 6 3.7070 -0.2004 -3.9566 27 16 4.7584 0.9457 -3.2409 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7093 1.1619 3.4844 32 1 0.3490 -1.9549 -1.3692 33 1 1.8140 -2.5262 -2.2039 34 1 1.7058 -2.6221 -0.4300 35 1 0.6814 0.1052 -2.6087 36 1 2.1026 1.1188 -2.2604 37 1 4.3789 -1.9321 -7.5623 38 1 4.1296 -3.6051 -9.3490 39 1 0.9439 -5.4053 -7.3895 40 1 1.0873 -3.8027 -5.5283 41 1 5.1332 -0.3211 -6.6564 42 1 6.0425 -0.6083 -5.1534 43 1 5.4577 -1.9859 -6.1169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:55 Heat of formation + Delta-G solvation = 159.366240 kcal Electronic energy + Delta-G solvation = -26170.188436 eV Core-core repulsion = 22573.002442 eV Total energy + Delta-G solvation = -3597.185995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.79724 -40.52140 -37.68590 -35.49713 -34.22613 -32.88344 -31.90831 -31.48046 -29.03893 -28.13429 -26.96390 -25.32052 -25.04371 -24.31124 -23.81784 -22.39296 -21.65254 -19.62638 -18.36373 -17.31403 -17.14686 -16.87277 -16.41139 -16.34435 -16.01068 -15.55785 -15.15037 -14.50479 -14.46497 -14.40808 -14.30252 -13.80662 -13.57406 -13.18185 -13.05458 -12.68476 -12.45159 -11.93572 -11.69817 -11.64515 -11.30957 -11.20361 -11.12165 -10.88257 -10.83313 -10.67241 -10.51628 -10.17108 -10.12542 -10.04619 -9.86362 -9.77166 -9.02996 -8.42288 -7.59242 -7.44990 -7.30171 -6.04898 -4.08658 0.04917 0.53068 1.15080 1.35805 1.75905 2.16260 2.45740 3.23981 3.32555 3.36857 3.40560 3.64178 3.88527 3.91729 4.27109 4.29370 4.38540 4.45856 4.56486 4.74738 4.82616 4.92370 5.00895 5.18662 5.20824 5.26599 5.28736 5.42610 5.56048 5.68296 5.94136 5.96741 6.01201 6.18259 6.30071 6.49718 6.64882 6.75033 6.91083 7.04700 7.22260 7.35955 7.56256 7.73321 7.95350 8.21479 8.41064 8.94762 9.55994 11.02362 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.003042 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.435263 B = 9203.691096 C =10054.002826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.221 3.779 3 H 0.048 0.952 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.034 3.966 14 C 0.304 3.696 15 N -0.353 5.353 16 N -0.250 5.250 17 C 0.291 3.709 18 C 0.021 3.979 19 C -0.159 4.159 20 C 0.107 3.893 21 N -0.473 5.473 22 C 0.108 3.892 23 C -0.125 4.125 24 N -0.496 5.496 25 C 0.074 3.926 26 C 0.472 3.528 27 S -0.562 6.562 28 H 0.094 0.906 29 H 0.006 0.994 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -8.792 -23.484 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.115 3.885 3 H 0.066 0.934 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.262 5.262 13 C -0.115 4.115 14 C 0.094 3.906 15 N -0.146 5.146 16 N -0.072 5.072 17 C 0.013 3.987 18 C 0.010 3.990 19 C -0.180 4.180 20 C -0.050 4.050 21 N -0.183 5.183 22 C -0.049 4.049 23 C -0.147 4.147 24 N -0.198 5.198 25 C -0.067 4.067 26 C 0.113 3.887 27 S -0.434 6.434 28 H 0.113 0.887 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.134 0.866 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.260 -8.762 -23.049 24.761 hybrid contribution -0.362 -0.156 0.979 1.055 sum 1.898 -8.917 -22.070 23.879 Atomic orbital electron populations 1.22485 1.00324 0.99766 1.00886 1.19327 0.89786 0.94907 0.84438 0.93374 1.20947 1.30875 1.12658 0.89233 0.91970 1.24889 0.95114 0.95103 0.98966 1.69856 1.36830 1.22857 1.23728 0.86532 0.79387 0.79441 0.81899 1.20106 1.21318 1.20414 1.62247 1.59518 1.02968 1.01468 1.22284 0.96766 0.91331 1.01091 1.22493 0.93371 0.95668 0.79031 1.49861 1.10711 1.29728 1.24283 1.77450 1.20556 1.07062 1.02107 1.22255 0.84603 0.95270 0.96528 1.17770 0.97489 0.92952 0.90832 1.22537 1.00130 1.01408 0.93952 1.22764 0.95011 0.89670 0.97534 1.67690 1.03614 1.22013 1.24936 1.22839 0.96516 0.97159 0.88373 1.22323 0.97591 0.93820 1.00958 1.46094 1.15109 1.32527 1.26082 1.22416 0.83323 1.04054 0.96932 1.23894 0.88659 0.91036 0.85100 1.93438 1.48647 1.33784 1.67502 0.88714 0.97499 0.94612 0.92794 0.95563 0.94228 0.90409 0.91081 0.85772 0.83505 0.81682 0.81540 0.83172 0.89463 0.86610 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 8.22 37.16 0.31 -3.72 16 2 C 0.22 5.41 2.31 -68.87 -0.16 5.25 16 3 H 0.05 1.31 7.93 -51.92 -0.41 0.89 16 4 C -0.50 -13.53 7.97 -34.44 -0.27 -13.80 16 5 H 0.06 1.72 7.10 -52.49 -0.37 1.34 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.54 -11.51 4.84 -240.19 -1.16 -12.67 16 13 C 0.03 0.66 8.71 60.07 0.52 1.18 16 14 C 0.30 5.63 5.50 -63.32 -0.35 5.28 16 15 N -0.35 -5.97 3.34 -65.02 -0.22 -6.19 16 16 N -0.25 -3.62 11.30 32.59 0.37 -3.25 16 17 C 0.29 3.44 7.69 -153.93 -1.18 2.25 16 18 C 0.02 0.18 5.89 -104.64 -0.62 -0.44 16 19 C -0.16 -0.96 8.70 -39.05 -0.34 -1.30 16 20 C 0.11 0.62 11.17 -17.61 -0.20 0.43 16 21 N -0.47 -3.65 10.35 -13.35 -0.14 -3.79 16 22 C 0.11 0.73 11.17 -17.61 -0.20 0.54 16 23 C -0.12 -0.97 9.79 -39.05 -0.38 -1.35 16 24 N -0.50 -6.14 3.16 -122.57 -0.39 -6.53 16 25 C 0.07 0.57 9.14 59.84 0.55 1.12 16 26 C 0.47 7.91 7.85 -86.81 -0.68 7.23 16 27 S -0.56 -11.27 29.45 -107.50 -3.17 -14.43 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.01 0.12 6.91 -51.93 -0.36 -0.23 16 30 H 0.03 0.79 6.33 -51.93 -0.33 0.46 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 32 H 0.03 0.49 6.21 -51.93 -0.32 0.17 16 33 H 0.04 0.71 6.64 -51.93 -0.34 0.37 16 34 H 0.08 1.63 6.86 -51.93 -0.36 1.27 16 35 H 0.07 1.23 7.06 -51.93 -0.37 0.87 16 36 H 0.12 2.41 7.45 -51.93 -0.39 2.03 16 37 H 0.15 0.56 4.92 -52.49 -0.26 0.30 16 38 H 0.17 0.47 8.06 -52.49 -0.42 0.04 16 39 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.15 1.13 8.02 -52.48 -0.42 0.71 16 41 H 0.09 0.46 7.68 -51.93 -0.40 0.06 16 42 H 0.12 1.05 7.45 -51.93 -0.39 0.66 16 43 H 0.09 0.46 6.43 -51.93 -0.33 0.13 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -33.67 361.51 -12.09 -45.76 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.34 Total: -0.54 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.10 Total: 4.23 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.91 Total: -56.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -11.27 SS G_CDS: -3.17 Total: -14.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.67 -12.09 -45.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.126 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds