Wall clock time and date at job start Tue Mar 31 2020 18:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47412 * 2 1 4 4 C 1.50701 * 109.47175 * 119.99453 * 2 1 3 5 5 H 1.08000 * 119.99897 * 119.99515 * 4 2 1 6 6 C 1.37874 * 120.00171 * 300.00593 * 4 2 1 7 7 N 1.31515 * 119.99984 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00024 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47139 * 59.99726 * 8 6 4 10 10 H 1.48498 * 109.47042 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47292 * 299.99706 * 8 6 4 12 12 N 1.46901 * 109.47393 * 239.99813 * 2 1 3 13 13 C 1.46907 * 110.99396 * 306.04866 * 12 2 1 14 14 C 1.46895 * 111.00083 * 69.99996 * 12 2 1 15 15 N 1.46498 * 109.47320 * 170.00175 * 14 12 2 16 16 N 1.40158 * 126.23730 * 90.02520 * 15 14 12 17 17 C 1.30353 * 108.04076 * 180.02562 * 16 15 14 18 18 C 1.47964 * 125.73176 * 179.97438 * 17 16 15 19 19 C 1.39939 * 120.92049 * 161.38606 * 18 17 16 20 20 C 1.37948 * 118.99780 * 179.73096 * 19 18 17 21 21 N 1.31937 * 120.89861 * 0.55075 * 20 19 18 22 22 C 1.31937 * 122.04733 * 359.72011 * 21 20 19 23 23 C 1.37945 * 120.89760 * 359.97438 * 22 21 20 24 24 N 1.38127 * 108.53185 * 359.97438 * 17 16 15 25 25 C 1.46496 * 125.86838 * 179.97438 * 24 17 16 26 26 C 1.34795 * 108.26522 * 359.73595 * 24 17 16 27 27 S 1.71205 * 126.17704 * 180.26800 * 26 24 17 28 28 H 1.09003 * 109.47113 * 300.00445 * 1 2 3 29 29 H 1.09000 * 109.46907 * 59.99757 * 1 2 3 30 30 H 1.08990 * 109.47268 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99958 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47437 * 59.99937 * 13 12 2 33 33 H 1.09004 * 109.46506 * 180.02562 * 13 12 2 34 34 H 1.08998 * 109.47119 * 299.99429 * 13 12 2 35 35 H 1.09005 * 109.47224 * 290.00274 * 14 12 2 36 36 H 1.09000 * 109.47079 * 50.00034 * 14 12 2 37 37 H 1.08002 * 120.49497 * 359.97164 * 19 18 17 38 38 H 1.08002 * 119.54722 * 180.29270 * 20 19 18 39 39 H 1.08001 * 119.55268 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.50172 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.46741 * 83.73047 * 25 24 17 42 42 H 1.08993 * 109.47697 * 203.73440 * 25 24 17 43 43 H 1.08994 * 109.47186 * 323.74022 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8268 -0.4196 5.2205 11 1 1.8258 -2.5200 4.0079 12 7 2.0197 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3077 14 6 1.7530 0.0971 -2.4090 15 7 2.4573 -0.4993 -3.5467 16 7 1.9529 -1.4800 -4.4117 17 6 2.8735 -1.7529 -5.2933 18 6 2.7530 -2.7362 -6.3924 19 6 3.6122 -2.6899 -7.4960 20 6 3.4682 -3.6297 -8.4955 21 7 2.5304 -4.5551 -8.4254 22 6 1.6965 -4.6308 -7.4058 23 6 1.7735 -3.7350 -6.3596 24 7 3.9803 -0.9699 -5.0290 25 6 5.2336 -0.9714 -5.7874 26 6 3.7070 -0.2004 -3.9566 27 16 4.7584 0.9457 -3.2409 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7093 1.1619 3.4844 32 1 0.3490 -1.9549 -1.3692 33 1 1.8140 -2.5262 -2.2039 34 1 1.7058 -2.6221 -0.4300 35 1 0.6814 0.1052 -2.6087 36 1 2.1026 1.1188 -2.2604 37 1 4.3789 -1.9321 -7.5623 38 1 4.1296 -3.6051 -9.3490 39 1 0.9439 -5.4053 -7.3895 40 1 1.0873 -3.8027 -5.5283 41 1 5.1332 -0.3211 -6.6564 42 1 6.0425 -0.6083 -5.1534 43 1 5.4577 -1.9859 -6.1169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103460963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:54 Heat of formation + Delta-G solvation = 138.917203 kcal Electronic energy + Delta-G solvation = -26171.075173 eV Core-core repulsion = 22573.002442 eV Total energy + Delta-G solvation = -3598.072731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.94762 -41.08621 -39.32304 -36.72330 -35.12877 -34.66567 -32.79672 -32.27605 -30.69304 -29.33917 -28.21135 -27.32835 -26.20102 -25.22486 -24.75611 -23.66360 -22.51624 -21.43709 -19.45899 -18.34593 -18.21226 -18.15000 -17.83623 -17.15126 -16.94213 -16.91065 -16.59141 -16.21781 -15.50314 -15.12822 -15.00599 -14.93146 -14.78940 -14.54810 -14.31563 -13.82684 -13.61470 -13.31825 -13.10597 -13.03024 -12.79984 -12.69997 -12.60656 -12.51830 -12.45514 -12.38580 -12.10822 -11.94703 -11.64903 -11.04136 -10.75885 -10.63955 -10.51485 -10.25095 -9.21441 -9.00184 -8.84645 -8.13510 -6.24118 -0.66907 -0.16917 0.05798 0.10020 0.88244 0.96339 1.27083 1.41282 1.44053 1.50973 2.41005 2.64108 2.75795 2.98235 3.14940 3.18234 3.45308 3.49666 3.72904 3.78699 3.95665 4.00436 4.10898 4.21467 4.32790 4.36595 4.45119 4.56046 4.60781 4.68271 4.68706 4.75653 4.80179 4.85667 4.96595 5.00026 5.03741 5.19581 5.39910 5.54768 5.64015 5.69877 5.88271 6.06755 6.31858 6.47082 6.84017 6.87600 7.44038 8.92358 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.003042 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.435263 B = 9203.691096 C =10054.002826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.229 3.771 3 H 0.013 0.987 4 C -0.515 4.515 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.553 5.553 13 C 0.046 3.954 14 C 0.314 3.686 15 N -0.359 5.359 16 N -0.273 5.273 17 C 0.316 3.684 18 C -0.003 4.003 19 C -0.143 4.143 20 C 0.109 3.891 21 N -0.490 5.490 22 C 0.107 3.893 23 C -0.128 4.128 24 N -0.481 5.481 25 C 0.060 3.940 26 C 0.478 3.522 27 S -0.647 6.647 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.173 0.827 38 H 0.199 0.801 39 H 0.189 0.811 40 H 0.148 0.852 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -11.059 -26.302 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.122 3.878 3 H 0.031 0.969 4 C -0.554 4.554 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.278 5.278 13 C -0.102 4.102 14 C 0.104 3.896 15 N -0.150 5.150 16 N -0.094 5.094 17 C 0.039 3.961 18 C -0.014 4.014 19 C -0.165 4.165 20 C -0.047 4.047 21 N -0.200 5.200 22 C -0.049 4.049 23 C -0.150 4.150 24 N -0.181 5.181 25 C -0.079 4.079 26 C 0.114 3.886 27 S -0.521 6.521 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.190 0.810 38 H 0.216 0.784 39 H 0.205 0.795 40 H 0.166 0.834 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.360 -11.071 -25.927 28.291 hybrid contribution -0.388 0.397 1.573 1.668 sum 1.972 -10.674 -24.355 26.664 Atomic orbital electron populations 1.22251 0.99033 0.99929 1.00722 1.18999 0.90590 0.92955 0.85209 0.96934 1.21192 1.30928 1.12568 0.90696 0.93034 1.25602 0.95294 0.95772 1.01569 1.69975 1.37532 1.23808 1.24267 0.85618 0.78464 0.78831 0.78741 1.20452 1.20695 1.19413 1.62037 1.60320 1.03806 1.01674 1.22159 0.97122 0.90082 1.00851 1.22207 0.94191 0.94667 0.78539 1.49613 1.10735 1.30370 1.24279 1.77515 1.21418 1.07434 1.03057 1.22899 0.83250 0.94048 0.95917 1.17884 0.99503 0.93070 0.90962 1.22802 0.99503 1.01589 0.92592 1.23340 0.94637 0.88583 0.98164 1.67758 1.04193 1.22777 1.25231 1.23162 0.96791 0.97281 0.87711 1.22393 0.97379 0.93924 1.01329 1.46365 1.16439 1.30701 1.24548 1.22943 0.80802 1.07090 0.97064 1.23411 0.88038 0.91016 0.86140 1.93542 1.50607 1.37588 1.70320 0.91334 0.95095 0.94096 0.92764 0.94737 0.92766 0.92187 0.89529 0.87411 0.80983 0.78419 0.79461 0.83391 0.86172 0.88045 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.42 8.22 71.98 0.59 -6.83 16 2 C 0.23 11.57 2.31 44.17 0.10 11.67 16 3 H 0.01 0.73 7.93 -2.38 -0.02 0.71 16 4 C -0.52 -28.68 7.97 25.60 0.20 -28.48 16 5 H 0.05 2.92 7.10 -2.91 -0.02 2.89 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 N -0.55 -24.20 4.84 -913.82 -4.42 -28.62 16 13 C 0.05 1.78 8.71 127.69 1.11 2.90 16 14 C 0.31 11.84 5.50 170.81 0.94 12.78 16 15 N -0.36 -12.09 3.34 -359.61 -1.20 -13.29 16 16 N -0.27 -7.51 11.30 -50.82 -0.57 -8.08 16 17 C 0.32 6.74 7.69 136.32 1.05 7.79 16 18 C 0.00 -0.04 5.89 -19.88 -0.12 -0.16 16 19 C -0.14 -1.10 8.70 22.61 0.20 -0.90 16 20 C 0.11 0.78 11.17 84.61 0.95 1.73 16 21 N -0.49 -5.78 10.35 -196.16 -2.03 -7.81 16 22 C 0.11 1.13 11.17 84.61 0.95 2.07 16 23 C -0.13 -1.66 9.79 22.61 0.22 -1.44 16 24 N -0.48 -11.03 3.16 -541.69 -1.71 -12.74 16 25 C 0.06 0.74 9.14 127.77 1.17 1.91 16 26 C 0.48 16.00 7.85 179.02 1.41 17.41 16 27 S -0.65 -27.07 29.45 -56.49 -1.66 -28.73 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 29 H 0.03 1.24 6.91 -2.39 -0.02 1.22 16 30 H 0.04 1.81 6.33 -2.39 -0.02 1.79 16 31 H 0.26 14.40 8.31 -92.70 -0.77 13.62 16 32 H 0.03 1.27 6.21 -2.39 -0.01 1.25 16 33 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16 34 H 0.06 2.53 6.86 -2.39 -0.02 2.51 16 35 H 0.09 2.97 7.06 -2.38 -0.02 2.95 16 36 H 0.11 4.41 7.45 -2.39 -0.02 4.40 16 37 H 0.17 0.37 4.92 -2.91 -0.01 0.35 16 38 H 0.20 0.04 8.06 -2.91 -0.02 0.02 16 39 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.15 1.95 8.02 -2.91 -0.02 1.92 16 41 H 0.12 0.78 7.68 -2.38 -0.02 0.76 16 42 H 0.10 1.70 7.45 -2.39 -0.02 1.69 16 43 H 0.13 0.69 6.43 -2.39 -0.02 0.67 16 Total: -1.00 -76.53 361.51 0.92 -75.60 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.05 Total: 7.64 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 9.21 Total: 21.82 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -9.70 Total: -122.78 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -27.07 SS G_CDS: -1.66 Total: -28.73 kcal Total: -76.53 0.92 -75.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.521 kcal (2) G-P(sol) polarization free energy of solvation -76.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds