Wall clock time and date at job start Tue Mar 31 2020 18:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47359 * 2 1 4 4 C 1.50698 * 109.47369 * 239.99869 * 2 1 3 5 5 H 1.07997 * 120.00025 * 239.99851 * 4 2 1 6 6 C 1.37879 * 120.00097 * 59.99997 * 4 2 1 7 7 N 1.31515 * 119.99685 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00143 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47059 * 89.99877 * 8 6 4 10 10 H 1.48498 * 109.47457 * 209.99978 * 8 6 4 11 11 H 1.48503 * 109.47132 * 330.00310 * 8 6 4 12 12 N 1.46902 * 109.47078 * 119.99708 * 2 1 3 13 13 C 1.46897 * 111.00021 * 176.04770 * 12 2 1 14 14 C 1.46903 * 110.99836 * 300.00245 * 12 2 1 15 15 N 1.46501 * 109.47041 * 169.99824 * 14 12 2 16 16 N 1.40152 * 126.24089 * 270.17973 * 15 14 12 17 17 C 1.30354 * 108.04276 * 180.26466 * 16 15 14 18 18 C 1.47969 * 125.73019 * 179.76551 * 17 16 15 19 19 C 1.39928 * 120.92487 * 18.14512 * 18 17 16 20 20 C 1.37952 * 118.99959 * 179.75063 * 19 18 17 21 21 N 1.31935 * 120.89395 * 0.53645 * 20 19 18 22 22 C 1.31933 * 122.05187 * 359.73590 * 21 20 19 23 23 C 1.37945 * 120.89406 * 359.97438 * 22 21 20 24 24 N 1.38127 * 108.52841 * 359.74489 * 17 16 15 25 25 C 1.46506 * 125.86233 * 180.02562 * 24 17 16 26 26 C 1.34785 * 108.26796 * 0.02562 * 24 17 16 27 27 S 1.71206 * 126.17939 * 180.02562 * 26 24 17 28 28 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47429 * 300.00383 * 1 2 3 30 30 H 1.09001 * 109.46603 * 59.99882 * 1 2 3 31 31 H 0.97007 * 119.99507 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47037 * 183.95328 * 13 12 2 33 33 H 1.08994 * 109.47478 * 303.95261 * 13 12 2 34 34 H 1.08993 * 109.47482 * 63.95660 * 13 12 2 35 35 H 1.08998 * 109.47349 * 49.99641 * 14 12 2 36 36 H 1.09001 * 109.47232 * 289.99386 * 14 12 2 37 37 H 1.08005 * 120.50087 * 0.02562 * 19 18 17 38 38 H 1.07996 * 119.54699 * 180.29575 * 20 19 18 39 39 H 1.07997 * 119.55404 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.50232 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46798 * 276.35182 * 25 24 17 42 42 H 1.08998 * 109.47085 * 36.34704 * 25 24 17 43 43 H 1.08999 * 109.47181 * 156.35362 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3450 -2.1617 -4.4123 10 1 2.4874 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5485 -0.0263 2.4211 15 7 1.8492 -0.8669 3.5827 16 7 1.0175 -1.8541 4.1284 17 6 1.6300 -2.3764 5.1538 18 6 1.1004 -3.4524 6.0205 19 6 0.0445 -4.2654 5.5938 20 6 -0.4146 -5.2601 6.4321 21 7 0.1209 -5.4423 7.6241 22 6 1.1137 -4.6950 8.0672 23 6 1.6380 -3.6815 7.2921 24 7 2.8565 -1.7569 5.2947 25 6 3.8538 -2.0526 6.3263 26 6 2.9780 -0.8338 4.3202 27 16 4.3205 0.1982 4.0674 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 0.7090 1.1613 -3.4845 32 1 3.8163 -1.3720 2.0502 33 1 3.8070 -1.2915 0.2721 34 1 3.9192 0.2043 1.2301 35 1 0.4721 0.1326 2.3563 36 1 2.0518 0.9347 2.5281 37 1 -0.4014 -4.1192 4.6210 38 1 -1.2260 -5.8958 6.1098 39 1 1.5216 -4.8792 9.0501 40 1 2.4506 -3.0733 7.6613 41 1 3.6085 -1.5049 7.2363 42 1 3.8544 -3.1223 6.5352 43 1 4.8404 -1.7503 5.9751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:58 Heat of formation + Delta-G solvation = 159.455664 kcal Electronic energy + Delta-G solvation = -26185.559623 eV Core-core repulsion = 22588.377506 eV Total energy + Delta-G solvation = -3597.182117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.84587 -40.50267 -37.55255 -35.45466 -34.22670 -32.95434 -31.87212 -31.38492 -29.17891 -28.68845 -27.01036 -25.30725 -24.61563 -24.22310 -23.42747 -22.48563 -21.63741 -19.79359 -18.41158 -17.31709 -17.15590 -16.92121 -16.47330 -16.38622 -16.06744 -15.54750 -15.15723 -14.56644 -14.38766 -14.35606 -14.25590 -14.05042 -13.43691 -13.13089 -12.87213 -12.61294 -12.42483 -12.01819 -11.77751 -11.60615 -11.38152 -11.26376 -11.06151 -10.91308 -10.77516 -10.59432 -10.27074 -10.16436 -10.10041 -10.01546 -9.88212 -9.74434 -9.03456 -8.50161 -7.71097 -7.57727 -7.22353 -6.08682 -4.13372 0.07382 0.55910 1.07613 1.27963 1.76997 2.14097 2.33623 3.26477 3.28231 3.34715 3.38480 3.62856 3.89895 3.91529 4.26274 4.30987 4.35523 4.46418 4.56198 4.70741 4.82449 4.95080 5.00705 5.21295 5.22170 5.24887 5.29963 5.41574 5.57837 5.63606 5.91519 6.04248 6.15567 6.32544 6.50760 6.65177 6.85666 6.89760 6.97294 7.02962 7.34230 7.38633 7.50565 7.73614 7.99172 8.16280 8.39129 8.90929 9.51567 10.98254 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003141 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.409359 B = 8913.620624 C =10013.357091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.220 3.780 3 H 0.009 0.991 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.546 5.546 13 C 0.037 3.963 14 C 0.295 3.705 15 N -0.344 5.344 16 N -0.234 5.234 17 C 0.286 3.714 18 C 0.021 3.979 19 C -0.123 4.123 20 C 0.108 3.892 21 N -0.473 5.473 22 C 0.106 3.894 23 C -0.160 4.160 24 N -0.493 5.493 25 C 0.073 3.927 26 C 0.463 3.537 27 S -0.579 6.579 28 H 0.038 0.962 29 H 0.007 0.993 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.147 0.853 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -9.851 22.174 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.115 3.885 3 H 0.026 0.974 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.272 5.272 13 C -0.111 4.111 14 C 0.086 3.914 15 N -0.137 5.137 16 N -0.055 5.055 17 C 0.009 3.991 18 C 0.010 3.990 19 C -0.145 4.145 20 C -0.048 4.048 21 N -0.183 5.183 22 C -0.050 4.050 23 C -0.181 4.181 24 N -0.194 5.194 25 C -0.068 4.068 26 C 0.102 3.898 27 S -0.451 6.451 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.185 0.815 39 H 0.183 0.817 40 H 0.164 0.836 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.627 -10.143 21.669 23.981 hybrid contribution 0.902 0.541 -0.934 1.407 sum -0.724 -9.602 20.735 22.862 Atomic orbital electron populations 1.21934 0.97468 1.00004 1.00129 1.19280 0.92322 0.92411 0.84534 0.97366 1.21051 1.31393 1.12480 0.89345 0.91736 1.24905 0.95088 0.95027 0.99024 1.69876 1.36718 1.22818 1.23662 0.86467 0.79263 0.79257 0.82265 1.20648 1.21209 1.19862 1.62150 1.11341 1.52525 1.01228 1.22439 0.86740 1.00655 1.01247 1.22620 1.02673 0.87571 0.78562 1.49900 1.10415 1.28304 1.25074 1.77569 1.17294 1.03168 1.07459 1.22336 0.84623 0.96764 0.95349 1.17754 0.96585 0.92317 0.92388 1.22361 0.95194 0.94648 1.02338 1.22853 0.98090 0.95087 0.88812 1.67685 1.09136 1.26249 1.15187 1.22750 0.92009 0.90583 0.99698 1.22521 1.01856 1.00250 0.93503 1.46076 1.15934 1.30493 1.26938 1.22440 0.92703 1.02742 0.88910 1.23930 0.92178 0.89622 0.84044 1.93413 1.22606 1.44400 1.84708 0.94315 0.97460 0.89052 0.92807 0.94081 0.90570 0.94678 0.86520 0.89509 0.82967 0.81479 0.81719 0.83582 0.89379 0.88698 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.76 37.16 0.33 -2.87 16 2 C 0.22 5.41 2.06 -68.87 -0.14 5.26 16 3 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 4 C -0.50 -13.60 7.88 -34.44 -0.27 -13.87 16 5 H 0.06 1.76 6.41 -52.49 -0.34 1.43 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.55 -11.87 4.76 -240.20 -1.14 -13.01 16 13 C 0.04 0.81 8.01 60.06 0.48 1.29 16 14 C 0.29 5.52 5.80 -63.31 -0.37 5.15 16 15 N -0.34 -5.88 3.58 -65.01 -0.23 -6.11 16 16 N -0.23 -3.54 12.38 32.59 0.40 -3.14 16 17 C 0.29 3.46 7.69 -153.93 -1.18 2.28 16 18 C 0.02 0.19 5.89 -104.64 -0.62 -0.43 16 19 C -0.12 -1.02 9.79 -39.05 -0.38 -1.40 16 20 C 0.11 0.78 11.17 -17.61 -0.20 0.58 16 21 N -0.47 -3.77 10.35 -13.35 -0.14 -3.91 16 22 C 0.11 0.64 11.17 -17.62 -0.20 0.44 16 23 C -0.16 -0.99 8.70 -39.05 -0.34 -1.33 16 24 N -0.49 -6.02 3.16 -122.56 -0.39 -6.40 16 25 C 0.07 0.54 9.15 59.85 0.55 1.09 16 26 C 0.46 7.51 6.62 -86.82 -0.58 6.94 16 27 S -0.58 -10.83 27.10 -107.50 -2.91 -13.74 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.01 0.14 6.20 -51.93 -0.32 -0.19 16 30 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.04 0.85 5.70 -51.93 -0.30 0.56 16 33 H 0.08 1.74 6.10 -51.93 -0.32 1.42 16 34 H 0.03 0.78 7.84 -51.93 -0.41 0.37 16 35 H 0.12 2.09 5.83 -51.93 -0.30 1.79 16 36 H 0.09 1.66 7.65 -51.93 -0.40 1.27 16 37 H 0.15 1.26 8.01 -52.48 -0.42 0.84 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.17 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.15 0.56 4.90 -52.48 -0.26 0.30 16 41 H 0.09 0.44 7.68 -51.93 -0.40 0.04 16 42 H 0.09 0.45 6.43 -51.93 -0.33 0.11 16 43 H 0.12 0.99 7.44 -51.93 -0.39 0.60 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -33.10 358.48 -11.73 -44.83 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.32 Total: -0.56 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.01 Total: 4.69 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.87 Total: -56.79 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -2.91 Total: -13.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.10 -11.73 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.285 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds