Wall clock time and date at job start Tue Mar 31 2020 18:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47359 * 2 1 4 4 C 1.50698 * 109.47369 * 239.99869 * 2 1 3 5 5 H 1.07997 * 120.00025 * 239.99851 * 4 2 1 6 6 C 1.37879 * 120.00097 * 59.99997 * 4 2 1 7 7 N 1.31515 * 119.99685 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00143 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47059 * 89.99877 * 8 6 4 10 10 H 1.48498 * 109.47457 * 209.99978 * 8 6 4 11 11 H 1.48503 * 109.47132 * 330.00310 * 8 6 4 12 12 N 1.46902 * 109.47078 * 119.99708 * 2 1 3 13 13 C 1.46897 * 111.00021 * 176.04770 * 12 2 1 14 14 C 1.46903 * 110.99836 * 300.00245 * 12 2 1 15 15 N 1.46501 * 109.47041 * 169.99824 * 14 12 2 16 16 N 1.40152 * 126.24089 * 270.17973 * 15 14 12 17 17 C 1.30354 * 108.04276 * 180.26466 * 16 15 14 18 18 C 1.47969 * 125.73019 * 179.76551 * 17 16 15 19 19 C 1.39928 * 120.92487 * 18.14512 * 18 17 16 20 20 C 1.37952 * 118.99959 * 179.75063 * 19 18 17 21 21 N 1.31935 * 120.89395 * 0.53645 * 20 19 18 22 22 C 1.31933 * 122.05187 * 359.73590 * 21 20 19 23 23 C 1.37945 * 120.89406 * 359.97438 * 22 21 20 24 24 N 1.38127 * 108.52841 * 359.74489 * 17 16 15 25 25 C 1.46506 * 125.86233 * 180.02562 * 24 17 16 26 26 C 1.34785 * 108.26796 * 0.02562 * 24 17 16 27 27 S 1.71206 * 126.17939 * 180.02562 * 26 24 17 28 28 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47429 * 300.00383 * 1 2 3 30 30 H 1.09001 * 109.46603 * 59.99882 * 1 2 3 31 31 H 0.97007 * 119.99507 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47037 * 183.95328 * 13 12 2 33 33 H 1.08994 * 109.47478 * 303.95261 * 13 12 2 34 34 H 1.08993 * 109.47482 * 63.95660 * 13 12 2 35 35 H 1.08998 * 109.47349 * 49.99641 * 14 12 2 36 36 H 1.09001 * 109.47232 * 289.99386 * 14 12 2 37 37 H 1.08005 * 120.50087 * 0.02562 * 19 18 17 38 38 H 1.07996 * 119.54699 * 180.29575 * 20 19 18 39 39 H 1.07997 * 119.55404 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.50232 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46798 * 276.35182 * 25 24 17 42 42 H 1.08998 * 109.47085 * 36.34704 * 25 24 17 43 43 H 1.08999 * 109.47181 * 156.35362 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3450 -2.1617 -4.4123 10 1 2.4874 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5485 -0.0263 2.4211 15 7 1.8492 -0.8669 3.5827 16 7 1.0175 -1.8541 4.1284 17 6 1.6300 -2.3764 5.1538 18 6 1.1004 -3.4524 6.0205 19 6 0.0445 -4.2654 5.5938 20 6 -0.4146 -5.2601 6.4321 21 7 0.1209 -5.4423 7.6241 22 6 1.1137 -4.6950 8.0672 23 6 1.6380 -3.6815 7.2921 24 7 2.8565 -1.7569 5.2947 25 6 3.8538 -2.0526 6.3263 26 6 2.9780 -0.8338 4.3202 27 16 4.3205 0.1982 4.0674 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 0.7090 1.1613 -3.4845 32 1 3.8163 -1.3720 2.0502 33 1 3.8070 -1.2915 0.2721 34 1 3.9192 0.2043 1.2301 35 1 0.4721 0.1326 2.3563 36 1 2.0518 0.9347 2.5281 37 1 -0.4014 -4.1192 4.6210 38 1 -1.2260 -5.8958 6.1098 39 1 1.5216 -4.8792 9.0501 40 1 2.4506 -3.0733 7.6613 41 1 3.6085 -1.5049 7.2363 42 1 3.8544 -3.1223 6.5352 43 1 4.8404 -1.7503 5.9751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103460964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:57 Heat of formation + Delta-G solvation = 139.240465 kcal Electronic energy + Delta-G solvation = -26186.436220 eV Core-core repulsion = 22588.377506 eV Total energy + Delta-G solvation = -3598.058714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.97762 -41.09005 -39.20401 -36.69309 -35.18840 -34.66588 -32.73521 -32.27420 -31.03834 -29.82707 -28.29467 -26.88127 -25.97503 -25.05571 -24.66882 -23.74305 -22.52912 -21.62975 -19.50992 -18.46176 -18.24527 -18.14205 -17.91836 -17.18579 -16.94204 -16.87836 -16.62387 -16.02404 -15.89935 -15.11991 -14.99092 -14.79460 -14.70584 -14.46517 -14.32461 -13.87638 -13.76198 -13.32310 -13.10945 -13.00223 -12.76761 -12.75196 -12.64707 -12.52146 -12.42408 -12.22664 -12.07754 -11.97917 -11.62833 -11.02088 -10.76781 -10.63987 -10.55084 -10.25025 -9.41151 -9.01739 -8.77231 -8.15895 -6.27542 -0.66068 -0.20435 0.05280 0.05900 0.88371 0.92855 1.23105 1.41153 1.42049 1.52145 2.39357 2.62074 2.75471 2.98652 3.07806 3.17613 3.42638 3.49577 3.73171 3.78598 3.97638 4.01219 4.08304 4.20644 4.30375 4.37063 4.44835 4.60011 4.66127 4.67585 4.75772 4.80465 4.85292 4.92155 4.97057 5.01255 5.11928 5.19248 5.40143 5.54977 5.58991 5.65913 5.85575 6.11319 6.19218 6.44154 6.81586 6.87554 7.40768 8.90066 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003141 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.409359 B = 8913.620624 C =10013.357091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.226 3.774 3 H -0.022 1.022 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.549 5.549 13 C 0.056 3.944 14 C 0.305 3.695 15 N -0.355 5.355 16 N -0.267 5.267 17 C 0.312 3.688 18 C -0.003 4.003 19 C -0.130 4.130 20 C 0.107 3.893 21 N -0.490 5.490 22 C 0.109 3.891 23 C -0.143 4.143 24 N -0.479 5.479 25 C 0.059 3.941 26 C 0.466 3.534 27 S -0.642 6.642 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.188 0.812 39 H 0.200 0.800 40 H 0.174 0.826 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 -12.029 24.699 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 H -0.005 1.005 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.275 5.275 13 C -0.092 4.092 14 C 0.095 3.905 15 N -0.146 5.146 16 N -0.088 5.088 17 C 0.035 3.965 18 C -0.014 4.014 19 C -0.152 4.152 20 C -0.049 4.049 21 N -0.199 5.199 22 C -0.047 4.047 23 C -0.164 4.164 24 N -0.178 5.178 25 C -0.080 4.080 26 C 0.102 3.898 27 S -0.515 6.515 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.163 0.837 38 H 0.205 0.795 39 H 0.217 0.783 40 H 0.192 0.808 41 H 0.139 0.861 42 H 0.148 0.852 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.883 -12.360 24.251 27.284 hybrid contribution 0.927 1.073 -1.479 2.048 sum -0.957 -11.288 22.772 25.434 Atomic orbital electron populations 1.21724 0.96366 0.99726 1.00369 1.19051 0.93065 0.90656 0.85281 1.00485 1.21284 1.31604 1.12462 0.90687 0.92597 1.25626 0.95223 0.95681 1.01639 1.69986 1.37359 1.23763 1.24316 0.85530 0.78745 0.78306 0.78900 1.19925 1.20743 1.19739 1.62076 1.11151 1.52653 1.01629 1.22209 0.86816 0.99646 1.00536 1.22364 1.02760 0.87467 0.77879 1.49591 1.11158 1.29008 1.24852 1.77611 1.17708 1.03983 1.09512 1.22940 0.83697 0.95754 0.94101 1.17881 0.97920 0.92218 0.93369 1.22396 0.95239 0.95121 1.02444 1.23144 0.98423 0.94863 0.88470 1.67756 1.09880 1.26916 1.15366 1.23357 0.91011 0.89557 1.00783 1.22801 1.01724 0.99993 0.91885 1.46370 1.16561 1.28615 1.26273 1.22975 0.91023 1.05484 0.88500 1.23580 0.91153 0.90111 0.84989 1.93491 1.24546 1.47143 1.86296 0.94654 0.94680 0.91312 0.92669 0.93352 0.92225 0.96052 0.85730 0.90314 0.83677 0.79534 0.78290 0.80834 0.86132 0.85226 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.76 71.98 0.63 -5.22 16 2 C 0.23 11.44 2.06 44.17 0.09 11.53 16 3 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 4 C -0.52 -28.83 7.88 25.60 0.20 -28.63 16 5 H 0.06 3.13 6.41 -2.91 -0.02 3.11 16 6 C 0.02 0.98 5.30 84.65 0.45 1.42 16 7 N -0.91 -51.84 11.32 21.45 0.24 -51.60 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.55 -24.47 4.76 -913.85 -4.35 -28.82 16 13 C 0.06 2.52 8.01 127.69 1.02 3.54 16 14 C 0.31 11.65 5.80 170.80 0.99 12.64 16 15 N -0.36 -12.11 3.58 -359.60 -1.29 -13.40 16 16 N -0.27 -7.89 12.38 -50.81 -0.63 -8.52 16 17 C 0.31 6.94 7.69 136.33 1.05 7.99 16 18 C 0.00 -0.04 5.89 -19.88 -0.12 -0.16 16 19 C -0.13 -1.90 9.79 22.61 0.22 -1.68 16 20 C 0.11 1.27 11.17 84.61 0.95 2.21 16 21 N -0.49 -6.15 10.35 -196.16 -2.03 -8.17 16 22 C 0.11 0.83 11.17 84.61 0.95 1.77 16 23 C -0.14 -1.15 8.70 22.61 0.20 -0.95 16 24 N -0.48 -10.76 3.16 -541.65 -1.71 -12.47 16 25 C 0.06 0.68 9.15 127.77 1.17 1.85 16 26 C 0.47 14.97 6.62 179.02 1.19 16.16 16 27 S -0.64 -24.50 27.10 -56.49 -1.53 -26.03 16 28 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 1.41 6.20 -2.39 -0.01 1.40 16 30 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 31 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 32 H 0.05 2.07 5.70 -2.38 -0.01 2.05 16 33 H 0.06 2.82 6.10 -2.39 -0.01 2.81 16 34 H 0.02 0.99 7.84 -2.39 -0.02 0.97 16 35 H 0.13 4.49 5.83 -2.39 -0.01 4.47 16 36 H 0.08 3.14 7.65 -2.39 -0.02 3.12 16 37 H 0.15 2.29 8.01 -2.91 -0.02 2.27 16 38 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.20 0.07 8.06 -2.91 -0.02 0.05 16 40 H 0.17 0.36 4.90 -2.91 -0.01 0.34 16 41 H 0.12 0.68 7.68 -2.39 -0.02 0.66 16 42 H 0.13 0.61 6.43 -2.39 -0.02 0.60 16 43 H 0.10 1.58 7.44 -2.39 -0.02 1.56 16 Total: -1.00 -74.30 358.48 0.76 -73.54 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.05 Total: 7.13 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 8.98 Total: 22.49 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -9.77 Total: -122.98 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -24.50 SS G_CDS: -1.53 Total: -26.03 kcal Total: -74.30 0.76 -73.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.781 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds