Wall clock time and date at job start Tue Mar 31 2020 18:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46779 * 2 1 4 4 C 1.50699 * 109.46964 * 240.00252 * 2 1 3 5 5 H 1.08001 * 120.00148 * 357.19225 * 4 2 1 6 6 C 1.37884 * 120.00079 * 177.18298 * 4 2 1 7 7 N 1.31506 * 120.00029 * 184.15522 * 6 4 2 8 8 Si 1.86802 * 119.99900 * 4.16278 * 6 4 2 9 9 H 1.48496 * 109.47303 * 94.03084 * 8 6 4 10 10 H 1.48492 * 109.47206 * 214.03383 * 8 6 4 11 11 H 1.48508 * 109.46771 * 334.03685 * 8 6 4 12 12 N 1.46897 * 109.47606 * 120.00067 * 2 1 3 13 13 C 1.46899 * 110.99989 * 58.95427 * 12 2 1 14 14 C 1.46905 * 111.00050 * 295.00109 * 12 2 1 15 15 N 1.46491 * 109.47088 * 189.99935 * 14 12 2 16 16 N 1.40152 * 126.24762 * 90.02815 * 15 14 12 17 17 C 1.30356 * 108.04123 * 179.97438 * 16 15 14 18 18 C 1.47983 * 125.72775 * 179.97438 * 17 16 15 19 19 C 1.39939 * 120.55189 * 158.11439 * 18 17 16 20 20 C 1.38369 * 118.29815 * 179.72410 * 19 18 17 21 21 C 1.38339 * 119.30068 * 0.02562 * 20 19 18 22 22 N 1.31901 * 121.06522 * 359.97438 * 21 20 19 23 23 C 1.31728 * 121.87150 * 0.02562 * 22 21 20 24 24 N 1.38081 * 108.53766 * 0.25794 * 17 16 15 25 25 C 1.46501 * 125.86124 * 179.70586 * 24 17 16 26 26 C 1.34793 * 108.27549 * 359.56773 * 24 17 16 27 27 S 1.71199 * 126.18233 * 180.15664 * 26 24 17 28 28 H 1.09002 * 109.46975 * 182.75522 * 1 2 3 29 29 H 1.09002 * 109.46964 * 302.74802 * 1 2 3 30 30 H 1.08994 * 109.47738 * 62.75503 * 1 2 3 31 31 H 0.97004 * 119.99917 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47009 * 296.04812 * 13 12 2 33 33 H 1.08997 * 109.46877 * 56.04512 * 13 12 2 34 34 H 1.08995 * 109.47145 * 176.04910 * 13 12 2 35 35 H 1.09000 * 109.46726 * 69.99804 * 14 12 2 36 36 H 1.08995 * 109.47112 * 310.00174 * 14 12 2 37 37 H 1.07998 * 120.84612 * 359.74844 * 19 18 17 38 38 H 1.08002 * 120.35194 * 180.02562 * 20 19 18 39 39 H 1.07993 * 119.46731 * 179.97438 * 21 20 19 40 40 H 1.07993 * 119.71181 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47392 * 83.55823 * 25 24 17 42 42 H 1.09002 * 109.46958 * 203.55621 * 25 24 17 43 43 H 1.09003 * 109.47015 * 323.55447 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 1.3315 -1.1603 -1.9182 6 6 3.3865 -0.7858 -1.4785 7 7 3.8215 -1.3334 -2.5922 8 14 4.6032 -0.1102 -0.2325 9 1 5.0464 -1.2033 0.6696 10 1 5.7793 0.4521 -0.9436 11 1 3.9511 0.9578 0.5673 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6488 0.0392 2.4181 15 7 2.3480 -0.5405 3.5675 16 7 3.6053 -0.1558 4.0528 17 6 3.8856 -0.9022 5.0841 18 6 5.1209 -0.8265 5.8954 19 6 5.1433 -1.3197 7.2048 20 6 6.3249 -1.2303 7.9192 21 6 7.4356 -0.6612 7.3224 22 7 7.3849 -0.2045 6.0860 23 6 6.2836 -0.2672 5.3660 24 7 2.8391 -1.7795 5.2885 25 6 2.7623 -2.7929 6.3436 26 6 1.8989 -1.5414 4.3523 27 16 0.4078 -2.3657 4.1850 28 1 -0.3633 -1.0265 0.0494 29 1 -0.3633 0.5559 0.8644 30 1 -0.3634 0.4704 -0.9136 31 1 4.7743 -1.3868 -2.7664 32 1 0.4420 -2.0731 1.3347 33 1 1.8168 -2.5949 0.3317 34 1 1.9619 -2.5868 2.1057 35 1 0.5723 -0.0346 2.5726 36 1 1.9297 1.0870 2.3125 37 1 4.2610 -1.7592 7.6461 38 1 6.3795 -1.6010 8.9322 39 1 8.3590 -0.5897 7.8777 40 1 6.2811 0.1179 4.3570 41 1 2.3991 -2.3336 7.2629 42 1 2.0780 -3.5845 6.0380 43 1 3.7527 -3.2148 6.5149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103461182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:51 Heat of formation + Delta-G solvation = 158.123252 kcal Electronic energy + Delta-G solvation = -26818.088592 eV Core-core repulsion = 23220.848697 eV Total energy + Delta-G solvation = -3597.239895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.81022 -40.52512 -37.81709 -35.53102 -33.93177 -32.97098 -32.30773 -31.15646 -29.44469 -28.49316 -26.76610 -25.58758 -25.01141 -24.36458 -23.54838 -22.35060 -21.58861 -19.40321 -18.22318 -17.68768 -17.17421 -16.95985 -16.78034 -16.51252 -16.00926 -15.64858 -15.18557 -14.48474 -14.43349 -14.19185 -14.06169 -13.88165 -13.69983 -13.07715 -12.97007 -12.74284 -12.50775 -12.22229 -11.99191 -11.59871 -11.36327 -11.31679 -11.14999 -11.02724 -10.80686 -10.65149 -10.39252 -10.35552 -10.06908 -10.00710 -9.65982 -9.51837 -9.17085 -8.59131 -7.72117 -7.57278 -7.22014 -6.08264 -4.15119 0.05468 0.63140 1.08858 1.31726 1.73676 2.18853 2.35711 3.24042 3.49358 3.53854 3.65629 3.67833 3.89178 4.07924 4.16125 4.23621 4.36042 4.55431 4.57143 4.69128 4.71237 4.81836 5.02340 5.15172 5.24103 5.34076 5.41224 5.43874 5.51685 5.58348 5.92396 6.02011 6.06216 6.19935 6.34367 6.37369 6.37528 6.56403 6.76095 7.02770 7.10143 7.16549 7.37567 7.53140 7.83093 8.00300 8.48883 8.92751 9.55326 11.00786 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.004562 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.055249 B = 6136.317217 C = 7843.508438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.047 0.953 4 C -0.509 4.509 5 H 0.076 0.924 6 C 0.082 3.918 7 N -0.894 5.894 8 Si 0.925 3.075 9 H -0.286 1.286 10 H -0.314 1.314 11 H -0.266 1.266 12 N -0.547 5.547 13 C 0.037 3.963 14 C 0.292 3.708 15 N -0.347 5.347 16 N -0.245 5.245 17 C 0.298 3.702 18 C -0.082 4.082 19 C -0.055 4.055 20 C -0.170 4.170 21 C 0.120 3.880 22 N -0.477 5.477 23 C 0.156 3.844 24 N -0.495 5.495 25 C 0.076 3.924 26 C 0.464 3.536 27 S -0.582 6.582 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.264 0.736 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 0.571 24.972 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.075 3.925 3 H 0.065 0.935 4 C -0.548 4.548 5 H 0.094 0.906 6 C -0.123 4.123 7 N -0.530 5.530 8 Si 0.757 3.243 9 H -0.213 1.213 10 H -0.243 1.243 11 H -0.190 1.190 12 N -0.275 5.275 13 C -0.110 4.110 14 C 0.083 3.917 15 N -0.139 5.139 16 N -0.065 5.065 17 C 0.021 3.979 18 C -0.088 4.088 19 C -0.083 4.083 20 C -0.190 4.190 21 C -0.038 4.038 22 N -0.185 5.185 23 C -0.003 4.003 24 N -0.196 5.196 25 C -0.066 4.066 26 C 0.104 3.896 27 S -0.455 6.455 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.182 0.818 40 H 0.188 0.812 41 H 0.105 0.895 42 H 0.134 0.866 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.343 1.225 23.603 24.232 hybrid contribution -0.280 -0.361 1.532 1.598 sum 5.062 0.865 25.135 25.654 Atomic orbital electron populations 1.22329 0.99070 1.01273 0.99920 1.19901 0.90296 0.95371 0.86974 0.93489 1.20841 0.92872 1.37166 1.03895 0.90594 1.25060 0.98837 0.93654 0.94721 1.69955 1.14854 1.43819 1.24370 0.86050 0.78439 0.79697 0.80156 1.21288 1.24314 1.19040 1.62835 1.60116 1.03835 1.00669 1.22365 0.98075 0.88839 1.01750 1.22601 0.93558 0.96148 0.79348 1.49903 1.11914 1.27166 1.24903 1.77593 0.98896 1.21022 1.08995 1.22256 0.90783 0.90184 0.94727 1.18493 0.90499 1.05770 0.93994 1.21889 0.99342 0.95086 0.91995 1.22120 0.93300 1.01685 1.01880 1.23119 0.98552 0.91282 0.90842 1.67884 1.27060 1.16433 1.07089 1.23102 0.85867 0.91429 0.99946 1.46074 1.14449 1.31262 1.27810 1.22383 1.05217 0.90943 0.88050 1.23884 0.93529 0.88260 0.83957 1.93340 1.06949 1.59131 1.86040 0.92528 0.95204 0.92439 0.92666 0.94307 0.90069 0.94154 0.88995 0.87553 0.83734 0.83562 0.81815 0.81214 0.89527 0.86623 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 8.45 37.16 0.31 -2.95 16 2 C 0.18 4.03 1.67 -68.87 -0.11 3.92 16 3 H 0.05 1.07 7.07 -51.93 -0.37 0.71 16 4 C -0.51 -13.88 7.79 -34.44 -0.27 -14.15 16 5 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 7 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 8 Si 0.93 23.72 26.16 -169.99 -4.45 19.27 16 9 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 10 H -0.31 -8.14 7.11 56.52 0.40 -7.74 16 11 H -0.27 -6.48 6.38 56.52 0.36 -6.12 16 12 N -0.55 -11.83 2.43 -240.20 -0.58 -12.41 16 13 C 0.04 0.81 7.54 60.06 0.45 1.27 16 14 C 0.29 5.37 5.43 -63.32 -0.34 5.03 16 15 N -0.35 -6.14 3.58 -65.02 -0.23 -6.37 16 16 N -0.24 -4.03 12.37 32.58 0.40 -3.63 16 17 C 0.30 3.93 7.64 -153.97 -1.18 2.75 16 18 C -0.08 -0.83 5.85 -104.81 -0.61 -1.44 16 19 C -0.06 -0.36 8.66 -38.90 -0.34 -0.70 16 20 C -0.17 -0.85 10.10 -39.50 -0.40 -1.25 16 21 C 0.12 0.79 11.17 -17.48 -0.20 0.60 16 22 N -0.48 -4.85 10.35 -12.93 -0.13 -4.99 16 23 C 0.16 1.71 10.86 -17.14 -0.19 1.53 16 24 N -0.49 -6.37 3.16 -122.56 -0.39 -6.76 16 25 C 0.08 0.60 9.14 59.85 0.55 1.14 16 26 C 0.46 7.73 6.62 -86.80 -0.57 7.15 16 27 S -0.58 -10.81 27.10 -107.50 -2.91 -13.72 16 28 H 0.06 1.14 6.33 -51.93 -0.33 0.81 16 29 H 0.03 0.50 6.89 -51.93 -0.36 0.14 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.04 0.82 6.15 -51.93 -0.32 0.50 16 33 H 0.08 1.97 6.99 -51.93 -0.36 1.61 16 34 H 0.04 0.88 5.70 -51.93 -0.30 0.58 16 35 H 0.09 1.63 6.53 -51.93 -0.34 1.30 16 36 H 0.11 1.84 8.00 -51.93 -0.42 1.42 16 37 H 0.15 0.60 5.19 -52.49 -0.27 0.33 16 38 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 39 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.17 2.00 7.99 -52.49 -0.42 1.59 16 41 H 0.09 0.46 7.58 -51.93 -0.39 0.06 16 42 H 0.12 1.04 7.44 -51.93 -0.39 0.66 16 43 H 0.09 0.50 6.66 -51.93 -0.35 0.15 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -35.32 355.14 -10.63 -45.95 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.47 Total: -1.41 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.99 Total: 5.15 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.16 Total: -60.59 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.45 Total: 19.27 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -2.91 Total: -13.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.32 -10.63 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103461182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.072 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds