Wall clock time and date at job start Tue Mar 31 2020 18:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46779 * 2 1 4 4 C 1.50699 * 109.46964 * 240.00252 * 2 1 3 5 5 H 1.08001 * 120.00148 * 357.19225 * 4 2 1 6 6 C 1.37884 * 120.00079 * 177.18298 * 4 2 1 7 7 N 1.31506 * 120.00029 * 184.15522 * 6 4 2 8 8 Si 1.86802 * 119.99900 * 4.16278 * 6 4 2 9 9 H 1.48496 * 109.47303 * 94.03084 * 8 6 4 10 10 H 1.48492 * 109.47206 * 214.03383 * 8 6 4 11 11 H 1.48508 * 109.46771 * 334.03685 * 8 6 4 12 12 N 1.46897 * 109.47606 * 120.00067 * 2 1 3 13 13 C 1.46899 * 110.99989 * 58.95427 * 12 2 1 14 14 C 1.46905 * 111.00050 * 295.00109 * 12 2 1 15 15 N 1.46491 * 109.47088 * 189.99935 * 14 12 2 16 16 N 1.40152 * 126.24762 * 90.02815 * 15 14 12 17 17 C 1.30356 * 108.04123 * 179.97438 * 16 15 14 18 18 C 1.47983 * 125.72775 * 179.97438 * 17 16 15 19 19 C 1.39939 * 120.55189 * 158.11439 * 18 17 16 20 20 C 1.38369 * 118.29815 * 179.72410 * 19 18 17 21 21 C 1.38339 * 119.30068 * 0.02562 * 20 19 18 22 22 N 1.31901 * 121.06522 * 359.97438 * 21 20 19 23 23 C 1.31728 * 121.87150 * 0.02562 * 22 21 20 24 24 N 1.38081 * 108.53766 * 0.25794 * 17 16 15 25 25 C 1.46501 * 125.86124 * 179.70586 * 24 17 16 26 26 C 1.34793 * 108.27549 * 359.56773 * 24 17 16 27 27 S 1.71199 * 126.18233 * 180.15664 * 26 24 17 28 28 H 1.09002 * 109.46975 * 182.75522 * 1 2 3 29 29 H 1.09002 * 109.46964 * 302.74802 * 1 2 3 30 30 H 1.08994 * 109.47738 * 62.75503 * 1 2 3 31 31 H 0.97004 * 119.99917 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47009 * 296.04812 * 13 12 2 33 33 H 1.08997 * 109.46877 * 56.04512 * 13 12 2 34 34 H 1.08995 * 109.47145 * 176.04910 * 13 12 2 35 35 H 1.09000 * 109.46726 * 69.99804 * 14 12 2 36 36 H 1.08995 * 109.47112 * 310.00174 * 14 12 2 37 37 H 1.07998 * 120.84612 * 359.74844 * 19 18 17 38 38 H 1.08002 * 120.35194 * 180.02562 * 20 19 18 39 39 H 1.07993 * 119.46731 * 179.97438 * 21 20 19 40 40 H 1.07993 * 119.71181 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47392 * 83.55823 * 25 24 17 42 42 H 1.09002 * 109.46958 * 203.55621 * 25 24 17 43 43 H 1.09003 * 109.47015 * 323.55447 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 1.3315 -1.1603 -1.9182 6 6 3.3865 -0.7858 -1.4785 7 7 3.8215 -1.3334 -2.5922 8 14 4.6032 -0.1102 -0.2325 9 1 5.0464 -1.2033 0.6696 10 1 5.7793 0.4521 -0.9436 11 1 3.9511 0.9578 0.5673 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6488 0.0392 2.4181 15 7 2.3480 -0.5405 3.5675 16 7 3.6053 -0.1558 4.0528 17 6 3.8856 -0.9022 5.0841 18 6 5.1209 -0.8265 5.8954 19 6 5.1433 -1.3197 7.2048 20 6 6.3249 -1.2303 7.9192 21 6 7.4356 -0.6612 7.3224 22 7 7.3849 -0.2045 6.0860 23 6 6.2836 -0.2672 5.3660 24 7 2.8391 -1.7795 5.2885 25 6 2.7623 -2.7929 6.3436 26 6 1.8989 -1.5414 4.3523 27 16 0.4078 -2.3657 4.1850 28 1 -0.3633 -1.0265 0.0494 29 1 -0.3633 0.5559 0.8644 30 1 -0.3634 0.4704 -0.9136 31 1 4.7743 -1.3868 -2.7664 32 1 0.4420 -2.0731 1.3347 33 1 1.8168 -2.5949 0.3317 34 1 1.9619 -2.5868 2.1057 35 1 0.5723 -0.0346 2.5726 36 1 1.9297 1.0870 2.3125 37 1 4.2610 -1.7592 7.6461 38 1 6.3795 -1.6010 8.9322 39 1 8.3590 -0.5897 7.8777 40 1 6.2811 0.1179 4.3570 41 1 2.3991 -2.3336 7.2629 42 1 2.0780 -3.5845 6.0380 43 1 3.7527 -3.2148 6.5149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103461182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:50 Heat of formation + Delta-G solvation = 135.710974 kcal Electronic energy + Delta-G solvation = -26819.060461 eV Core-core repulsion = 23220.848697 eV Total energy + Delta-G solvation = -3598.211764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.94508 -41.16272 -39.45762 -36.71711 -34.95387 -34.45259 -33.48651 -32.25474 -30.95703 -29.62649 -28.05160 -27.50229 -26.14967 -25.12536 -24.68747 -23.64777 -22.51388 -21.22554 -19.38280 -18.92244 -18.30513 -18.20422 -17.96213 -17.38030 -16.98972 -16.93131 -16.62071 -16.18315 -15.56318 -15.13834 -15.04129 -14.93881 -14.79320 -14.60138 -14.26886 -14.01930 -13.77283 -13.27595 -13.10642 -13.08059 -12.94884 -12.84532 -12.67130 -12.53772 -12.41962 -12.34286 -11.93002 -11.73022 -11.64174 -11.16099 -10.99298 -10.82329 -10.66598 -10.22497 -9.33801 -8.97557 -8.71973 -8.31015 -6.39529 -0.66407 -0.18124 0.09579 0.11144 0.81856 0.97549 1.26220 1.39705 1.44415 1.60348 2.41675 2.60051 2.72748 2.89121 2.99969 3.36582 3.41953 3.45405 3.63221 3.75859 3.87947 4.04122 4.12249 4.19643 4.30463 4.32886 4.36957 4.49461 4.60398 4.64212 4.65872 4.71739 4.76347 4.84210 4.87673 4.98706 5.07518 5.21135 5.25893 5.43650 5.50544 5.56084 5.82421 5.97762 6.22500 6.39307 6.72824 6.78219 7.33854 8.81918 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.004562 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.055249 B = 6136.317217 C = 7843.508438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.054 0.946 4 C -0.504 4.504 5 H 0.040 0.960 6 C 0.034 3.966 7 N -0.942 5.942 8 Si 0.983 3.017 9 H -0.301 1.301 10 H -0.318 1.318 11 H -0.245 1.245 12 N -0.562 5.562 13 C 0.060 3.940 14 C 0.299 3.701 15 N -0.360 5.360 16 N -0.287 5.287 17 C 0.322 3.678 18 C -0.103 4.103 19 C -0.044 4.044 20 C -0.150 4.150 21 C 0.119 3.881 22 N -0.508 5.508 23 C 0.138 3.862 24 N -0.483 5.483 25 C 0.061 3.939 26 C 0.466 3.534 27 S -0.633 6.633 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.175 0.825 38 H 0.193 0.807 39 H 0.196 0.804 40 H 0.147 0.853 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 1.002 29.963 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.072 0.928 4 C -0.543 4.543 5 H 0.058 0.942 6 C -0.166 4.166 7 N -0.581 5.581 8 Si 0.813 3.187 9 H -0.229 1.229 10 H -0.248 1.248 11 H -0.168 1.168 12 N -0.289 5.289 13 C -0.088 4.088 14 C 0.090 3.910 15 N -0.150 5.150 16 N -0.107 5.107 17 C 0.044 3.956 18 C -0.109 4.109 19 C -0.071 4.071 20 C -0.169 4.169 21 C -0.038 4.038 22 N -0.216 5.216 23 C -0.021 4.021 24 N -0.182 5.182 25 C -0.077 4.077 26 C 0.102 3.898 27 S -0.506 6.506 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.192 0.808 38 H 0.210 0.790 39 H 0.213 0.787 40 H 0.164 0.836 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.292 1.657 28.647 29.376 hybrid contribution -0.444 -0.541 0.218 0.733 sum 5.849 1.117 28.865 29.473 Atomic orbital electron populations 1.22198 0.96683 1.01241 1.01524 1.19724 0.92249 0.94683 0.85616 0.92817 1.21074 0.92058 1.35933 1.05192 0.94158 1.25729 1.00577 0.94333 0.95954 1.70068 1.15074 1.46547 1.26437 0.85135 0.76465 0.79131 0.77935 1.22866 1.24788 1.16818 1.62461 1.60753 1.03789 1.01935 1.22078 0.98160 0.88856 0.99682 1.22476 0.94219 0.96200 0.78155 1.49679 1.12756 1.27670 1.24944 1.77617 0.98543 1.23245 1.11320 1.22817 0.90981 0.88364 0.93405 1.18510 0.88722 1.08178 0.95459 1.22271 1.01092 0.93590 0.90167 1.22606 0.91575 0.99378 1.03303 1.23807 1.00580 0.89751 0.89662 1.67867 1.26868 1.17921 1.08961 1.22832 0.86936 0.92635 0.99670 1.46380 1.13122 1.31252 1.27462 1.22907 1.07135 0.89959 0.87744 1.23641 0.93597 0.87842 0.84745 1.93389 1.09152 1.60707 1.87337 0.93549 0.92021 0.92221 0.92764 0.93811 0.93530 0.94279 0.88205 0.86203 0.80789 0.79007 0.78689 0.83605 0.85956 0.87758 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.03 8.45 71.98 0.61 -5.43 16 2 C 0.18 8.20 1.67 44.17 0.07 8.27 16 3 H 0.05 2.38 7.07 -2.38 -0.02 2.36 16 4 C -0.50 -28.31 7.79 25.60 0.20 -28.11 16 5 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 6 C 0.03 1.99 5.47 84.66 0.46 2.46 16 7 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 8 Si 0.98 50.25 26.16 68.60 1.79 52.05 16 9 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 10 H -0.32 -16.34 7.11 99.48 0.71 -15.63 16 11 H -0.24 -11.49 6.38 99.48 0.63 -10.86 16 12 N -0.56 -24.16 2.43 -913.87 -2.22 -26.38 16 13 C 0.06 2.67 7.54 127.69 0.96 3.63 16 14 C 0.30 10.63 5.43 170.81 0.93 11.55 16 15 N -0.36 -12.37 3.58 -359.62 -1.29 -13.66 16 16 N -0.29 -9.19 12.37 -50.83 -0.63 -9.82 16 17 C 0.32 7.86 7.64 136.34 1.04 8.90 16 18 C -0.10 -1.82 5.85 -19.99 -0.12 -1.93 16 19 C -0.04 -0.35 8.66 22.71 0.20 -0.16 16 20 C -0.15 -0.63 10.10 22.32 0.23 -0.40 16 21 C 0.12 1.08 11.17 84.71 0.95 2.03 16 22 N -0.51 -9.35 10.35 -194.82 -2.02 -11.36 16 23 C 0.14 2.91 10.86 85.00 0.92 3.83 16 24 N -0.48 -11.31 3.16 -541.68 -1.71 -13.03 16 25 C 0.06 0.74 9.14 127.77 1.17 1.91 16 26 C 0.47 14.94 6.62 179.01 1.19 16.12 16 27 S -0.63 -23.14 27.10 -56.49 -1.53 -24.67 16 28 H 0.05 1.85 6.33 -2.39 -0.02 1.84 16 29 H 0.06 1.96 6.89 -2.39 -0.02 1.95 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.04 1.87 6.15 -2.39 -0.01 1.86 16 33 H 0.05 2.35 6.99 -2.39 -0.02 2.34 16 34 H 0.04 1.72 5.70 -2.39 -0.01 1.71 16 35 H 0.10 3.39 6.53 -2.39 -0.02 3.38 16 36 H 0.12 3.92 8.00 -2.39 -0.02 3.90 16 37 H 0.17 0.31 5.19 -2.91 -0.02 0.30 16 38 H 0.19 -0.85 8.06 -2.91 -0.02 -0.87 16 39 H 0.20 0.42 8.06 -2.91 -0.02 0.39 16 40 H 0.15 3.60 7.99 -2.91 -0.02 3.58 16 41 H 0.12 0.66 7.58 -2.39 -0.02 0.64 16 42 H 0.10 1.63 7.44 -2.39 -0.02 1.61 16 43 H 0.12 0.72 6.66 -2.39 -0.02 0.71 16 Total: -1.00 -82.38 355.14 2.47 -79.90 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 0.97 Total: 3.65 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 8.80 Total: 22.69 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -7.56 Total: -133.61 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 1.79 Total: 52.05 kcal Atomic # 16 Polarization: -23.14 SS G_CDS: -1.53 Total: -24.67 kcal Total: -82.38 2.47 -79.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103461182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.614 kcal (2) G-P(sol) polarization free energy of solvation -82.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds