Wall clock time and date at job start Tue Mar 31 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35971 * 117.00289 * 2 1 4 4 C 1.38722 * 119.98441 * 180.02562 * 3 2 1 5 5 C 1.38083 * 120.01369 * 180.02562 * 4 3 2 6 6 C 1.38848 * 119.98608 * 359.96862 * 5 4 3 7 7 N 1.40109 * 120.01895 * 179.97438 * 6 5 4 8 8 C 1.46764 * 124.34814 * 354.19356 * 7 6 5 9 9 C 1.54474 * 105.47447 * 197.03620 * 8 7 6 10 10 H 1.09002 * 110.97460 * 92.70535 * 9 8 7 11 11 C 1.50703 * 110.97061 * 216.42805 * 9 8 7 12 12 O 1.20830 * 119.99910 * 359.97438 * 11 9 8 13 13 O 1.34225 * 120.00299 * 179.97438 * 11 9 8 14 14 C 1.45208 * 116.99944 * 179.97438 * 13 11 9 15 15 H 1.08996 * 109.46803 * 329.99952 * 14 13 11 16 16 C 1.52996 * 109.47063 * 89.99997 * 14 13 11 17 17 C 1.50698 * 109.46605 * 209.99908 * 14 13 11 18 18 H 1.07999 * 120.00538 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99625 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00049 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 120.00082 * 0.02562 * 19 17 14 22 22 H 1.48501 * 109.47291 * 89.99619 * 21 19 17 23 23 H 1.48499 * 109.47323 * 209.99840 * 21 19 17 24 24 H 1.48499 * 109.46843 * 329.99756 * 21 19 17 25 25 C 1.54788 * 101.69377 * 334.38615 * 9 8 7 26 26 C 1.34416 * 124.35262 * 174.21281 * 7 6 5 27 27 O 1.21292 * 124.94421 * 359.53831 * 26 7 6 28 28 C 1.38848 * 119.97007 * 0.26281 * 6 5 4 29 29 C 1.38092 * 119.98531 * 359.53168 * 28 6 5 30 30 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46836 * 300.00269 * 1 2 3 32 32 H 1.08999 * 109.46921 * 60.00026 * 1 2 3 33 33 H 1.07994 * 119.99157 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00860 * 180.02562 * 5 4 3 35 35 H 1.09008 * 110.24417 * 316.03349 * 8 7 6 36 36 H 1.09001 * 110.24504 * 78.02811 * 8 7 6 37 37 H 1.09007 * 109.47017 * 300.00237 * 16 14 13 38 38 H 1.09003 * 109.47414 * 59.99908 * 16 14 13 39 39 H 1.08989 * 109.47160 * 179.97438 * 16 14 13 40 40 H 0.96997 * 119.99935 * 180.02562 * 20 19 17 41 41 H 1.08994 * 110.61617 * 266.40365 * 25 9 8 42 42 H 1.08997 * 110.42643 * 143.70439 * 25 9 8 43 43 H 1.08001 * 120.01162 * 179.74142 * 28 6 5 44 44 H 1.07997 * 119.99321 * 180.19116 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2836 -0.0005 5 6 4.0593 2.5136 0.0000 6 6 3.3035 3.6783 0.0004 7 7 3.9395 4.9267 0.0015 8 6 5.3895 5.1172 0.1248 9 6 5.5789 6.6003 0.5130 10 1 5.6236 6.7176 1.5958 11 6 6.8089 7.1760 -0.1402 12 8 7.4923 6.4839 -0.8571 13 8 7.1454 8.4576 0.0744 14 6 8.3432 8.9442 -0.5867 15 1 9.0480 8.1224 -0.7125 16 6 7.9733 9.5134 -1.9579 17 6 8.9758 10.0248 0.2518 18 1 8.5233 10.3164 1.1880 19 6 10.1330 10.6406 -0.1759 20 7 10.6848 11.5840 0.5555 21 14 10.9161 10.1358 -1.7950 22 1 10.3623 10.9677 -2.8934 23 1 12.3858 10.3336 -1.7170 24 1 10.6227 8.7047 -2.0618 25 6 4.2952 7.2426 -0.0664 26 6 3.3002 6.1038 -0.1099 27 8 2.1005 6.2340 -0.2327 28 6 1.9169 3.6054 0.0058 29 6 1.2905 2.3747 0.0010 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0195 0.3776 -0.0005 34 1 5.1378 2.5697 -0.0008 35 1 5.7901 4.4692 0.9045 36 1 5.8794 4.9107 -0.8268 37 1 7.5156 8.7317 -2.5643 38 1 7.2684 10.3352 -1.8321 39 1 8.8723 9.8790 -2.4539 40 1 11.4987 12.0174 0.2545 41 1 4.4780 7.6280 -1.0694 42 1 3.9378 8.0366 0.5892 43 1 1.3283 4.5109 0.0104 44 1 0.2120 2.3178 0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113690892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:31 Heat of formation + Delta-G solvation = -112.981601 kcal Electronic energy + Delta-G solvation = -27960.598668 eV Core-core repulsion = 23844.264412 eV Total energy + Delta-G solvation = -4116.334257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53321 -40.23032 -39.66401 -37.63330 -36.87486 -35.92338 -33.45845 -33.01238 -31.39494 -30.73475 -29.25164 -28.06290 -27.45407 -25.40483 -24.59289 -23.37784 -22.25422 -21.27801 -20.09106 -19.72814 -18.47624 -18.01308 -17.72716 -16.88719 -16.58087 -16.41848 -16.02649 -15.62352 -15.45980 -15.29424 -14.82097 -14.40720 -14.26153 -14.08014 -13.88191 -13.75215 -13.55262 -13.13083 -12.92321 -12.87698 -12.80160 -12.39656 -12.26132 -12.05020 -11.84021 -11.67363 -11.64358 -11.43484 -11.30460 -10.98493 -10.34820 -10.26898 -9.99843 -9.93609 -9.87140 -9.68214 -9.31297 -9.23791 -8.77184 -7.83057 -6.30393 -4.33774 0.98674 1.08444 2.29896 2.40417 2.51828 2.98911 3.12429 3.12981 3.25432 3.25928 3.53818 3.91586 4.07276 4.18889 4.47565 4.56280 4.60490 4.69709 4.77972 4.80089 4.92749 5.00364 5.08852 5.12540 5.14542 5.23724 5.26555 5.31131 5.53569 5.57275 5.63417 5.75438 5.94209 6.03256 6.11519 6.16128 6.18057 6.28058 6.46931 6.58967 6.77508 6.89669 7.10057 7.19962 7.38704 7.75986 8.04975 8.41350 8.75659 9.25751 10.81458 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.002198 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.946760 B =12736.711812 C =13186.279735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.099 3.901 4 C -0.123 4.123 5 C -0.116 4.116 6 C 0.133 3.867 7 N -0.557 5.557 8 C 0.107 3.893 9 C -0.097 4.097 10 H 0.132 0.868 11 C 0.466 3.534 12 O -0.514 6.514 13 O -0.333 6.333 14 C 0.191 3.809 15 H 0.048 0.952 16 C -0.171 4.171 17 C -0.528 4.528 18 H 0.088 0.912 19 C 0.080 3.920 20 N -0.885 5.885 21 Si 0.879 3.121 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.262 1.262 25 C -0.138 4.138 26 C 0.522 3.478 27 O -0.511 6.511 28 C -0.116 4.116 29 C -0.179 4.179 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.270 0.730 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.158 0.842 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 -19.424 -0.593 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.054 3.946 4 C -0.142 4.142 5 C -0.136 4.136 6 C 0.040 3.960 7 N -0.280 5.280 8 C -0.015 4.015 9 C -0.117 4.117 10 H 0.150 0.850 11 C 0.308 3.692 12 O -0.404 6.404 13 O -0.248 6.248 14 C 0.138 3.862 15 H 0.065 0.935 16 C -0.228 4.228 17 C -0.565 4.565 18 H 0.106 0.894 19 C -0.123 4.123 20 N -0.522 5.522 21 Si 0.708 3.292 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.187 1.187 25 C -0.178 4.178 26 C 0.311 3.689 27 O -0.387 6.387 28 C -0.136 4.136 29 C -0.198 4.198 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.175 0.825 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.746 -19.540 -0.856 26.410 hybrid contribution 0.506 0.008 -0.931 1.060 sum -17.240 -19.532 -1.787 26.114 Atomic orbital electron populations 1.23042 0.78505 1.03834 1.01392 1.86065 1.21267 1.26863 1.89129 1.19010 0.92355 0.84200 0.99068 1.20185 0.91307 0.97963 1.04735 1.20656 1.00006 0.90102 1.02867 1.17682 0.91748 0.83731 1.02838 1.45795 1.08482 1.04672 1.69094 1.22231 0.79014 0.95280 1.04994 1.21868 0.92048 0.94362 1.03407 0.85027 1.22707 0.85330 0.82270 0.78908 1.90629 1.52244 1.61007 1.36512 1.86517 1.46488 1.25068 1.66741 1.21003 0.80054 0.95221 0.89944 0.93451 1.22540 1.01610 1.00836 0.97854 1.20751 1.09111 1.18640 1.08024 0.89390 1.24736 0.96034 0.94358 0.97208 1.69829 1.20291 1.24111 1.37967 0.86976 0.78271 0.80032 0.83930 1.19960 1.21610 1.18726 1.22345 0.92230 0.97596 1.05656 1.20986 0.88557 0.84411 0.74910 1.90620 1.14221 1.85125 1.48685 1.21433 0.92796 0.99424 0.99931 1.21138 1.00100 0.91588 1.06982 0.88317 0.92670 0.92669 0.84679 0.84630 0.88478 0.87867 0.94406 0.91629 0.92407 0.91967 0.86527 0.85752 0.82450 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.02 10.50 -19.65 -0.21 -3.23 16 3 C 0.10 1.01 6.69 -39.22 -0.26 0.75 16 4 C -0.12 -1.19 9.98 -39.46 -0.39 -1.59 16 5 C -0.12 -1.15 9.40 -39.41 -0.37 -1.52 16 6 C 0.13 1.54 6.60 -83.62 -0.55 0.99 16 7 N -0.56 -6.39 3.14 -112.22 -0.35 -6.74 16 8 C 0.11 1.11 5.62 -3.12 -0.02 1.09 16 9 C -0.10 -1.12 3.67 -90.06 -0.33 -1.45 16 10 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.47 7.76 7.16 36.01 0.26 8.02 16 12 O -0.51 -9.72 14.73 -18.75 -0.28 -9.99 16 13 O -0.33 -6.73 9.86 -39.25 -0.39 -7.11 16 14 C 0.19 4.48 2.15 -27.89 -0.06 4.42 16 15 H 0.05 1.17 6.21 -51.93 -0.32 0.85 16 16 C -0.17 -3.64 9.03 37.16 0.34 -3.30 16 17 C -0.53 -14.36 9.48 -34.44 -0.33 -14.69 16 18 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 19 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 20 N -0.89 -25.78 13.96 55.43 0.77 -25.00 16 21 Si 0.88 20.80 24.37 -169.99 -4.14 16.66 16 22 H -0.27 -6.22 6.87 56.52 0.39 -5.83 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 25 C -0.14 -1.52 6.41 -26.65 -0.17 -1.69 16 26 C 0.52 6.55 7.92 -10.86 -0.09 6.46 16 27 O -0.51 -7.63 14.82 5.55 0.08 -7.55 16 28 C -0.12 -1.36 9.28 -39.41 -0.37 -1.73 16 29 C -0.18 -1.80 9.03 -39.45 -0.36 -2.16 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 32 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.10 7.01 -52.49 -0.37 0.73 16 35 H 0.10 0.81 7.70 -51.92 -0.40 0.41 16 36 H 0.10 1.17 6.97 -51.93 -0.36 0.81 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.27 3.27 -51.94 -0.17 1.10 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 1.30 7.90 -51.93 -0.41 0.89 16 42 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.16 2.04 5.26 -52.49 -0.28 1.76 16 44 H 0.13 1.03 6.29 -52.49 -0.33 0.70 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -32.59 360.62 -6.45 -39.04 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.57 Total: 1.61 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.80 Total: -3.12 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.42 Total: -31.74 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.79 Total: -27.89 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.59 -6.45 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.940 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds