Wall clock time and date at job start Tue Mar 31 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35971 * 117.00289 * 2 1 4 4 C 1.38722 * 119.98441 * 180.02562 * 3 2 1 5 5 C 1.38083 * 120.01369 * 180.02562 * 4 3 2 6 6 C 1.38848 * 119.98608 * 359.96862 * 5 4 3 7 7 N 1.40109 * 120.01895 * 179.97438 * 6 5 4 8 8 C 1.46764 * 124.34814 * 354.19356 * 7 6 5 9 9 C 1.54474 * 105.47447 * 197.03620 * 8 7 6 10 10 H 1.09002 * 110.97460 * 92.70535 * 9 8 7 11 11 C 1.50703 * 110.97061 * 216.42805 * 9 8 7 12 12 O 1.20830 * 119.99910 * 359.97438 * 11 9 8 13 13 O 1.34225 * 120.00299 * 179.97438 * 11 9 8 14 14 C 1.45208 * 116.99944 * 179.97438 * 13 11 9 15 15 H 1.08996 * 109.46803 * 329.99952 * 14 13 11 16 16 C 1.52996 * 109.47063 * 89.99997 * 14 13 11 17 17 C 1.50698 * 109.46605 * 209.99908 * 14 13 11 18 18 H 1.07999 * 120.00538 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99625 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00049 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 120.00082 * 0.02562 * 19 17 14 22 22 H 1.48501 * 109.47291 * 89.99619 * 21 19 17 23 23 H 1.48499 * 109.47323 * 209.99840 * 21 19 17 24 24 H 1.48499 * 109.46843 * 329.99756 * 21 19 17 25 25 C 1.54788 * 101.69377 * 334.38615 * 9 8 7 26 26 C 1.34416 * 124.35262 * 174.21281 * 7 6 5 27 27 O 1.21292 * 124.94421 * 359.53831 * 26 7 6 28 28 C 1.38848 * 119.97007 * 0.26281 * 6 5 4 29 29 C 1.38092 * 119.98531 * 359.53168 * 28 6 5 30 30 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46836 * 300.00269 * 1 2 3 32 32 H 1.08999 * 109.46921 * 60.00026 * 1 2 3 33 33 H 1.07994 * 119.99157 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00860 * 180.02562 * 5 4 3 35 35 H 1.09008 * 110.24417 * 316.03349 * 8 7 6 36 36 H 1.09001 * 110.24504 * 78.02811 * 8 7 6 37 37 H 1.09007 * 109.47017 * 300.00237 * 16 14 13 38 38 H 1.09003 * 109.47414 * 59.99908 * 16 14 13 39 39 H 1.08989 * 109.47160 * 179.97438 * 16 14 13 40 40 H 0.96997 * 119.99935 * 180.02562 * 20 19 17 41 41 H 1.08994 * 110.61617 * 266.40365 * 25 9 8 42 42 H 1.08997 * 110.42643 * 143.70439 * 25 9 8 43 43 H 1.08001 * 120.01162 * 179.74142 * 28 6 5 44 44 H 1.07997 * 119.99321 * 180.19116 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2836 -0.0005 5 6 4.0593 2.5136 0.0000 6 6 3.3035 3.6783 0.0004 7 7 3.9395 4.9267 0.0015 8 6 5.3895 5.1172 0.1248 9 6 5.5789 6.6003 0.5130 10 1 5.6236 6.7176 1.5958 11 6 6.8089 7.1760 -0.1402 12 8 7.4923 6.4839 -0.8571 13 8 7.1454 8.4576 0.0744 14 6 8.3432 8.9442 -0.5867 15 1 9.0480 8.1224 -0.7125 16 6 7.9733 9.5134 -1.9579 17 6 8.9758 10.0248 0.2518 18 1 8.5233 10.3164 1.1880 19 6 10.1330 10.6406 -0.1759 20 7 10.6848 11.5840 0.5555 21 14 10.9161 10.1358 -1.7950 22 1 10.3623 10.9677 -2.8934 23 1 12.3858 10.3336 -1.7170 24 1 10.6227 8.7047 -2.0618 25 6 4.2952 7.2426 -0.0664 26 6 3.3002 6.1038 -0.1099 27 8 2.1005 6.2340 -0.2327 28 6 1.9169 3.6054 0.0058 29 6 1.2905 2.3747 0.0010 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0195 0.3776 -0.0005 34 1 5.1378 2.5697 -0.0008 35 1 5.7901 4.4692 0.9045 36 1 5.8794 4.9107 -0.8268 37 1 7.5156 8.7317 -2.5643 38 1 7.2684 10.3352 -1.8321 39 1 8.8723 9.8790 -2.4539 40 1 11.4987 12.0174 0.2545 41 1 4.4780 7.6280 -1.0694 42 1 3.9378 8.0366 0.5892 43 1 1.3283 4.5109 0.0104 44 1 0.2120 2.3178 0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113690892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:30 Heat of formation + Delta-G solvation = -133.019425 kcal Electronic energy + Delta-G solvation = -27961.467573 eV Core-core repulsion = 23844.264412 eV Total energy + Delta-G solvation = -4117.203162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.50016 -41.33330 -40.67339 -38.43805 -38.10869 -37.21936 -35.29158 -34.06499 -32.59177 -32.14957 -30.04260 -28.96377 -28.06461 -27.32900 -25.72974 -24.21079 -23.38927 -22.53823 -21.18695 -20.89937 -19.36944 -19.15759 -18.68035 -18.64283 -17.92377 -17.45418 -17.05259 -16.73170 -16.57422 -16.26788 -16.01909 -15.59095 -15.19215 -15.08422 -14.85586 -14.71799 -14.59630 -14.47470 -14.30219 -14.20044 -13.75157 -13.62333 -13.58188 -13.40092 -12.85899 -12.82137 -12.67188 -12.57029 -12.23129 -12.19695 -12.04025 -11.75904 -11.64841 -11.40644 -11.20404 -10.82996 -10.81515 -10.79905 -10.08231 -8.64095 -8.41942 -6.50642 0.19117 0.28413 1.14642 1.26632 1.33758 1.38932 1.42499 1.47762 1.88574 2.21525 2.39726 2.74435 2.91109 2.97050 3.15043 3.55486 3.66699 3.84218 3.88575 4.02397 4.10728 4.27749 4.30752 4.34517 4.39956 4.40315 4.43395 4.46720 4.50961 4.55812 4.69957 4.72419 4.75777 4.78299 4.83400 5.01092 5.14215 5.23334 5.32406 5.36130 5.40233 5.63977 5.78458 5.91085 6.14546 6.41701 6.54435 6.80481 6.84383 7.13877 8.73649 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.002198 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.946760 B =12736.711812 C =13186.279735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.095 3.905 4 C -0.127 4.127 5 C -0.111 4.111 6 C 0.112 3.888 7 N -0.552 5.552 8 C 0.110 3.890 9 C -0.084 4.084 10 H 0.158 0.842 11 C 0.467 3.533 12 O -0.534 6.534 13 O -0.345 6.345 14 C 0.194 3.806 15 H 0.037 0.963 16 C -0.166 4.166 17 C -0.537 4.537 18 H 0.049 0.951 19 C 0.029 3.971 20 N -0.930 5.930 21 Si 0.939 3.061 22 H -0.255 1.255 23 H -0.287 1.287 24 H -0.253 1.253 25 C -0.133 4.133 26 C 0.519 3.481 27 O -0.541 6.541 28 C -0.131 4.131 29 C -0.181 4.181 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.274 0.726 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.063 -21.442 -1.539 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.049 3.951 4 C -0.146 4.146 5 C -0.131 4.131 6 C 0.020 3.980 7 N -0.276 5.276 8 C -0.011 4.011 9 C -0.104 4.104 10 H 0.176 0.824 11 C 0.310 3.690 12 O -0.424 6.424 13 O -0.260 6.260 14 C 0.139 3.861 15 H 0.054 0.946 16 C -0.224 4.224 17 C -0.575 4.575 18 H 0.068 0.932 19 C -0.171 4.171 20 N -0.568 5.568 21 Si 0.764 3.236 22 H -0.180 1.180 23 H -0.214 1.214 24 H -0.177 1.177 25 C -0.173 4.173 26 C 0.309 3.691 27 O -0.419 6.419 28 C -0.152 4.152 29 C -0.200 4.200 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.238 -21.591 -1.800 28.320 hybrid contribution 0.542 0.518 -0.547 0.928 sum -17.696 -21.073 -2.347 27.617 Atomic orbital electron populations 1.23324 0.76704 1.05559 1.02061 1.86054 1.23203 1.26442 1.88932 1.19191 0.92804 0.84514 0.98579 1.20484 0.91488 0.98605 1.04055 1.20860 1.00877 0.89514 1.01897 1.17881 0.91924 0.84182 1.04059 1.45810 1.08713 1.04523 1.68533 1.22288 0.78410 0.94802 1.05610 1.21906 0.89391 0.94750 1.04330 0.82402 1.23544 0.86269 0.80747 0.78413 1.90620 1.53355 1.61006 1.37467 1.86502 1.45176 1.27317 1.67007 1.20655 0.81201 0.93705 0.90500 0.94567 1.22435 1.01700 1.01662 0.96554 1.20954 1.09513 1.19676 1.07329 0.93238 1.25564 0.96520 0.94193 1.00815 1.69960 1.21109 1.25635 1.40111 0.86003 0.77280 0.80363 0.79918 1.17990 1.21390 1.17722 1.22353 0.91428 0.97484 1.06035 1.21183 0.88327 0.85039 0.74560 1.90612 1.15464 1.85575 1.50230 1.21397 0.93132 0.99472 1.01149 1.21292 1.01085 0.91063 1.06544 0.86179 0.91920 0.92060 0.82947 0.82738 0.85830 0.88525 0.92097 0.91086 0.92834 0.91653 0.86553 0.84304 0.84049 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.69 10.50 -93.22 -0.98 -6.67 16 3 C 0.09 1.79 6.69 22.50 0.15 1.94 16 4 C -0.13 -2.22 9.98 22.35 0.22 -2.00 16 5 C -0.11 -1.98 9.40 22.38 0.21 -1.77 16 6 C 0.11 2.46 6.60 38.11 0.25 2.72 16 7 N -0.55 -11.87 3.14 -627.55 -1.97 -13.84 16 8 C 0.11 2.03 5.62 86.83 0.49 2.52 16 9 C -0.08 -1.75 3.67 -10.43 -0.04 -1.79 16 10 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 11 C 0.47 14.79 7.16 71.24 0.51 15.30 16 12 O -0.53 -19.29 14.73 21.95 0.32 -18.97 16 13 O -0.34 -13.64 9.86 -51.37 -0.51 -14.14 16 14 C 0.19 8.94 2.15 29.85 0.06 9.01 16 15 H 0.04 1.76 6.21 -2.39 -0.01 1.74 16 16 C -0.17 -6.76 9.03 71.98 0.65 -6.11 16 17 C -0.54 -29.73 9.48 25.60 0.24 -29.49 16 18 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 19 C 0.03 1.61 5.45 84.66 0.46 2.07 16 20 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 21 Si 0.94 42.28 24.37 68.60 1.67 43.95 16 22 H -0.25 -10.66 6.87 99.48 0.68 -9.98 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.25 -10.93 6.53 99.48 0.65 -10.28 16 25 C -0.13 -2.72 6.41 30.64 0.20 -2.52 16 26 C 0.52 12.55 7.92 87.90 0.70 13.24 16 27 O -0.54 -16.18 14.82 -3.07 -0.05 -16.22 16 28 C -0.13 -3.04 9.28 22.38 0.21 -2.83 16 29 C -0.18 -3.47 9.03 22.35 0.20 -3.27 16 30 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.51 7.66 -2.38 -0.02 0.49 16 32 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.16 2.07 7.01 -2.91 -0.02 2.04 16 35 H 0.12 1.65 7.70 -2.38 -0.02 1.63 16 36 H 0.10 1.98 6.97 -2.39 -0.02 1.96 16 37 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.05 2.21 3.27 -2.39 -0.01 2.20 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.12 2.42 7.90 -2.39 -0.02 2.40 16 42 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.14 3.74 5.26 -2.91 -0.02 3.73 16 44 H 0.15 2.17 6.29 -2.91 -0.02 2.15 16 Total: -1.00 -71.54 360.62 5.38 -66.17 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.96 Total: 16.31 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.63 Total: -1.70 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -1.67 Total: -68.73 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -1.21 Total: -56.00 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.67 Total: 43.95 kcal Total: -71.54 5.38 -66.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.853 kcal (2) G-P(sol) polarization free energy of solvation -71.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds