Wall clock time and date at job start Tue Mar 31 2020 18:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47591 * 2 1 4 4 C 1.50705 * 109.47064 * 119.99765 * 2 1 3 5 5 H 1.08001 * 119.99944 * 119.99723 * 4 2 1 6 6 C 1.37869 * 120.00171 * 300.00170 * 4 2 1 7 7 N 1.31518 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47143 * 59.99676 * 8 6 4 10 10 H 1.48496 * 109.47314 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46849 * 299.99944 * 8 6 4 12 12 O 1.45199 * 109.47290 * 239.99448 * 2 1 3 13 13 C 1.34230 * 116.99799 * 89.99927 * 12 2 1 14 14 O 1.20824 * 120.00176 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00150 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47189 * 180.02562 * 15 13 12 17 17 N 1.46499 * 109.47167 * 180.02562 * 16 15 13 18 18 C 1.40220 * 120.50533 * 269.97547 * 17 16 15 19 19 C 1.38505 * 120.74648 * 15.47752 * 18 17 16 20 20 C 1.38285 * 119.81650 * 180.02562 * 19 18 17 21 21 C 1.38275 * 120.19866 * 0.02562 * 20 19 18 22 22 C 1.38316 * 120.26227 * 359.96221 * 21 20 19 23 23 C 1.38397 * 119.86626 * 0.03899 * 22 21 20 24 24 O 1.35976 * 120.67840 * 180.02562 * 23 22 21 25 25 C 1.42997 * 116.72344 * 147.09217 * 24 23 22 26 26 H 1.09001 * 109.44037 * 286.42092 * 25 24 23 27 27 C 1.52997 * 109.44348 * 166.48511 * 25 24 23 28 28 C 1.35082 * 120.51166 * 89.99154 * 17 16 15 29 29 O 1.21293 * 120.13295 * 1.63223 * 28 17 16 30 30 H 1.08999 * 109.46466 * 60.00205 * 1 2 3 31 31 H 1.09001 * 109.47361 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46642 * 300.00694 * 1 2 3 33 33 H 0.97002 * 119.99799 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47263 * 59.99934 * 15 13 12 35 35 H 1.09007 * 109.46637 * 299.99972 * 15 13 12 36 36 H 1.08998 * 109.47153 * 59.99332 * 16 15 13 37 37 H 1.09004 * 109.46586 * 299.99740 * 16 15 13 38 38 H 1.08003 * 120.09087 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.90037 * 180.02562 * 20 19 18 40 40 H 1.08004 * 119.87080 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.06890 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47153 * 299.93236 * 27 25 24 43 43 H 1.09001 * 109.46832 * 179.97438 * 27 25 24 44 44 H 1.09004 * 109.47261 * 59.93408 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1209 4.0083 10 1 1.8269 -0.4198 5.2204 11 1 1.8257 -2.5202 4.0078 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0638 -2.2811 14 8 1.9982 1.2517 -2.2504 15 6 2.7183 -0.5774 -3.5495 16 6 2.8636 0.4888 -4.6371 17 7 3.3502 -0.1347 -5.8703 18 6 4.7259 -0.2370 -6.1213 19 6 5.6470 -0.0540 -5.1032 20 6 6.9993 -0.1588 -5.3724 21 6 7.4333 -0.4450 -6.6537 22 6 6.5185 -0.6292 -7.6747 23 6 5.1635 -0.5258 -7.4128 24 8 4.2498 -0.7042 -8.4039 25 6 3.0005 -1.2903 -8.0289 26 1 3.1421 -2.3537 -7.8358 27 6 1.9915 -1.1087 -9.1646 28 6 2.4805 -0.6195 -6.7831 29 8 1.2858 -0.5152 -6.6012 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8899 33 1 0.7095 1.1618 3.4844 34 1 2.0089 -1.3371 -3.8774 35 1 3.6873 -1.0410 -3.3638 36 1 3.5732 1.2483 -4.3089 37 1 1.8948 0.9527 -4.8227 38 1 5.3100 0.1700 -4.1019 39 1 7.7187 -0.0167 -4.5795 40 1 8.4908 -0.5252 -6.8581 41 1 6.8609 -0.8521 -8.6743 42 1 1.8496 -0.0454 -9.3580 43 1 1.0391 -1.5558 -8.8793 44 1 2.3666 -1.5950 -10.0651 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:00 Heat of formation + Delta-G solvation = -128.106764 kcal Electronic energy + Delta-G solvation = -28509.257982 eV Core-core repulsion = 24392.267849 eV Total energy + Delta-G solvation = -4116.990133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92602 -39.67151 -39.17077 -38.07440 -36.35529 -35.67041 -33.30533 -32.48352 -31.96718 -30.56463 -29.66416 -29.07870 -26.16219 -25.33593 -23.78786 -23.64018 -22.54674 -21.37976 -19.70629 -19.63169 -19.46868 -17.76296 -17.29691 -16.86392 -16.65843 -15.84282 -15.66102 -15.58552 -15.52731 -14.96933 -14.80468 -14.69995 -14.38280 -14.20798 -13.63824 -13.35312 -13.25818 -12.94596 -12.69549 -12.61130 -12.50255 -12.22519 -12.10382 -11.81788 -11.51697 -11.45069 -11.33345 -11.18302 -11.07289 -10.87318 -10.67241 -10.42710 -10.30999 -10.17758 -9.73174 -9.57879 -8.98758 -8.95250 -8.52014 -8.15726 -6.21078 -4.28572 0.76648 0.94634 2.00038 2.19153 2.85934 2.89072 3.24150 3.27726 3.29992 3.39297 3.56769 3.70396 4.30220 4.33169 4.37488 4.51102 4.66610 4.76839 4.84428 4.86682 4.96502 5.08461 5.11717 5.28489 5.29251 5.31496 5.39409 5.59114 5.63634 5.71699 5.75456 5.83533 5.88445 6.09467 6.16954 6.32552 6.60862 6.61687 6.86790 6.88374 7.03673 7.12371 7.46296 7.56137 7.69408 7.89225 8.10410 8.56264 8.83114 9.36943 10.86283 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017019 B = 0.002678 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.796489 B =10452.658197 C =11626.004426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.355 6.355 13 C 0.459 3.541 14 O -0.521 6.521 15 C -0.135 4.135 16 C 0.121 3.879 17 N -0.549 5.549 18 C 0.098 3.902 19 C -0.123 4.123 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.109 4.109 23 C 0.076 3.924 24 O -0.303 6.303 25 C 0.079 3.921 26 H 0.104 0.896 27 C -0.134 4.134 28 C 0.488 3.512 29 O -0.497 6.497 30 H 0.016 0.984 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.267 0.733 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.003 -4.526 -22.678 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.271 6.271 13 C 0.301 3.699 14 O -0.412 6.412 15 C -0.173 4.173 16 C 0.000 4.000 17 N -0.274 5.274 18 C 0.004 3.996 19 C -0.143 4.143 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.128 4.128 23 C 0.030 3.970 24 O -0.218 6.218 25 C 0.020 3.980 26 H 0.121 0.879 27 C -0.192 4.192 28 C 0.275 3.725 29 O -0.370 6.370 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.062 -3.940 -22.549 25.004 hybrid contribution 0.135 -0.345 1.234 1.288 sum 10.196 -4.285 -21.315 24.014 Atomic orbital electron populations 1.22169 0.97506 1.00177 1.01481 1.20663 0.91455 0.93905 0.77640 0.93478 1.20985 1.32694 1.13548 0.88900 0.91356 1.24892 0.94894 0.95093 0.99081 1.69892 1.35928 1.22485 1.24343 0.86316 0.79195 0.79550 0.80966 1.19966 1.20995 1.19917 1.86486 1.75585 1.43669 1.21349 1.22938 0.75073 0.85887 0.86000 1.90618 1.48916 1.16837 1.84808 1.21666 1.04329 1.00013 0.91339 1.21483 1.03197 0.94383 0.80896 1.45801 1.04040 1.56916 1.20610 1.18175 0.83438 1.04000 0.94035 1.20864 0.92620 1.02472 0.98365 1.21055 0.94813 0.99487 0.97256 1.21009 0.99594 1.00308 0.92306 1.20514 0.89174 1.02387 1.00758 1.18598 0.89988 1.02949 0.85496 1.86227 1.23800 1.78783 1.32956 1.22659 0.83902 0.97847 0.93599 0.87854 1.21717 0.97111 1.04341 0.96002 1.21578 0.86910 0.79086 0.84884 1.90785 1.14611 1.54620 1.76970 0.96459 0.94404 0.88177 0.92290 0.87778 0.87842 0.88306 0.87664 0.84515 0.84861 0.84906 0.84475 0.91023 0.88898 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 9.33 37.16 0.35 -3.66 16 2 C 0.22 5.82 2.56 -27.88 -0.07 5.74 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.70 8.90 -34.44 -0.31 -15.01 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 O -0.35 -8.44 9.86 -39.26 -0.39 -8.83 16 13 C 0.46 9.39 7.93 36.01 0.29 9.68 16 14 O -0.52 -11.95 15.20 -18.75 -0.28 -12.24 16 15 C -0.13 -2.00 5.99 -27.88 -0.17 -2.17 16 16 C 0.12 1.69 4.06 -4.04 -0.02 1.67 16 17 N -0.55 -6.94 2.72 -113.22 -0.31 -7.24 16 18 C 0.10 1.10 6.38 -83.49 -0.53 0.57 16 19 C -0.12 -1.23 8.95 -39.47 -0.35 -1.58 16 20 C -0.11 -0.87 10.04 -39.55 -0.40 -1.26 16 21 C -0.11 -0.80 10.04 -39.54 -0.40 -1.20 16 22 C -0.11 -0.88 10.00 -39.49 -0.39 -1.28 16 23 C 0.08 0.78 6.44 -39.09 -0.25 0.53 16 24 O -0.30 -3.13 10.09 -19.66 -0.20 -3.33 16 25 C 0.08 0.76 3.68 -27.86 -0.10 0.66 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 27 C -0.13 -1.04 9.15 37.16 0.34 -0.70 16 28 C 0.49 6.27 7.38 -10.83 -0.08 6.19 16 29 O -0.50 -7.72 15.80 5.55 0.09 -7.63 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.10 1.32 7.19 -51.93 -0.37 0.95 16 36 H 0.10 1.30 7.02 -51.93 -0.36 0.94 16 37 H 0.11 1.65 7.40 -51.93 -0.38 1.26 16 38 H 0.14 1.37 5.99 -52.48 -0.31 1.06 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -32.80 369.80 -7.99 -40.79 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.88 Total: 1.78 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.19 Total: -0.20 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.32 Total: -31.89 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.78 Total: -32.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.80 -7.99 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.318 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds