Wall clock time and date at job start Tue Mar 31 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47591 * 2 1 4 4 C 1.50705 * 109.47064 * 119.99765 * 2 1 3 5 5 H 1.08001 * 119.99944 * 119.99723 * 4 2 1 6 6 C 1.37869 * 120.00171 * 300.00170 * 4 2 1 7 7 N 1.31518 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47143 * 59.99676 * 8 6 4 10 10 H 1.48496 * 109.47314 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46849 * 299.99944 * 8 6 4 12 12 O 1.45199 * 109.47290 * 239.99448 * 2 1 3 13 13 C 1.34230 * 116.99799 * 89.99927 * 12 2 1 14 14 O 1.20824 * 120.00176 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00150 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47189 * 180.02562 * 15 13 12 17 17 N 1.46499 * 109.47167 * 180.02562 * 16 15 13 18 18 C 1.40220 * 120.50533 * 269.97547 * 17 16 15 19 19 C 1.38505 * 120.74648 * 15.47752 * 18 17 16 20 20 C 1.38285 * 119.81650 * 180.02562 * 19 18 17 21 21 C 1.38275 * 120.19866 * 0.02562 * 20 19 18 22 22 C 1.38316 * 120.26227 * 359.96221 * 21 20 19 23 23 C 1.38397 * 119.86626 * 0.03899 * 22 21 20 24 24 O 1.35976 * 120.67840 * 180.02562 * 23 22 21 25 25 C 1.42997 * 116.72344 * 147.09217 * 24 23 22 26 26 H 1.09001 * 109.44037 * 286.42092 * 25 24 23 27 27 C 1.52997 * 109.44348 * 166.48511 * 25 24 23 28 28 C 1.35082 * 120.51166 * 89.99154 * 17 16 15 29 29 O 1.21293 * 120.13295 * 1.63223 * 28 17 16 30 30 H 1.08999 * 109.46466 * 60.00205 * 1 2 3 31 31 H 1.09001 * 109.47361 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46642 * 300.00694 * 1 2 3 33 33 H 0.97002 * 119.99799 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47263 * 59.99934 * 15 13 12 35 35 H 1.09007 * 109.46637 * 299.99972 * 15 13 12 36 36 H 1.08998 * 109.47153 * 59.99332 * 16 15 13 37 37 H 1.09004 * 109.46586 * 299.99740 * 16 15 13 38 38 H 1.08003 * 120.09087 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.90037 * 180.02562 * 20 19 18 40 40 H 1.08004 * 119.87080 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.06890 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47153 * 299.93236 * 27 25 24 43 43 H 1.09001 * 109.46832 * 179.97438 * 27 25 24 44 44 H 1.09004 * 109.47261 * 59.93408 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1209 4.0083 10 1 1.8269 -0.4198 5.2204 11 1 1.8257 -2.5202 4.0078 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0638 -2.2811 14 8 1.9982 1.2517 -2.2504 15 6 2.7183 -0.5774 -3.5495 16 6 2.8636 0.4888 -4.6371 17 7 3.3502 -0.1347 -5.8703 18 6 4.7259 -0.2370 -6.1213 19 6 5.6470 -0.0540 -5.1032 20 6 6.9993 -0.1588 -5.3724 21 6 7.4333 -0.4450 -6.6537 22 6 6.5185 -0.6292 -7.6747 23 6 5.1635 -0.5258 -7.4128 24 8 4.2498 -0.7042 -8.4039 25 6 3.0005 -1.2903 -8.0289 26 1 3.1421 -2.3537 -7.8358 27 6 1.9915 -1.1087 -9.1646 28 6 2.4805 -0.6195 -6.7831 29 8 1.2858 -0.5152 -6.6012 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8899 33 1 0.7095 1.1618 3.4844 34 1 2.0089 -1.3371 -3.8774 35 1 3.6873 -1.0410 -3.3638 36 1 3.5732 1.2483 -4.3089 37 1 1.8948 0.9527 -4.8227 38 1 5.3100 0.1700 -4.1019 39 1 7.7187 -0.0167 -4.5795 40 1 8.4908 -0.5252 -6.8581 41 1 6.8609 -0.8521 -8.6743 42 1 1.8496 -0.0454 -9.3580 43 1 1.0391 -1.5558 -8.8793 44 1 2.3666 -1.5950 -10.0651 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:58 Heat of formation + Delta-G solvation = -146.755437 kcal Electronic energy + Delta-G solvation = -28510.066649 eV Core-core repulsion = 24392.267849 eV Total energy + Delta-G solvation = -4117.798800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.78225 -41.40591 -40.06688 -38.88874 -37.84040 -36.99470 -35.37678 -33.34001 -33.06906 -31.64018 -31.26514 -29.91345 -27.53117 -27.21718 -24.80206 -24.37482 -23.60453 -22.91608 -21.39185 -20.52688 -20.30216 -19.06452 -18.68142 -18.28921 -17.94348 -17.30698 -17.28782 -16.59154 -16.50810 -16.40759 -15.81218 -15.64818 -15.44432 -15.35529 -14.76734 -14.62426 -14.33999 -14.26036 -14.03077 -13.77410 -13.50505 -13.32358 -13.22364 -13.14383 -13.03012 -12.85224 -12.83265 -12.47936 -12.42786 -12.21822 -12.19301 -12.13316 -11.68672 -11.60413 -11.42907 -11.08697 -11.04084 -10.62391 -9.68187 -8.96116 -8.31049 -6.48776 0.02452 0.27596 1.09360 1.19747 1.22207 1.41329 1.45100 1.53451 1.96257 2.17846 2.40599 2.71516 2.81776 2.99634 3.48041 3.57577 3.62573 3.75175 3.83318 3.87384 4.02981 4.18276 4.24591 4.31765 4.36313 4.48990 4.49310 4.61755 4.66480 4.73146 4.73240 4.78250 4.79808 4.95819 5.10003 5.11848 5.24857 5.27764 5.44768 5.53646 5.57413 5.69020 5.78861 5.86383 6.02570 6.25840 6.50889 6.55376 6.85686 7.22915 8.76557 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017019 B = 0.002678 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.796489 B =10452.658197 C =11626.004426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.011 0.989 4 C -0.551 4.551 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.264 1.264 12 O -0.362 6.362 13 C 0.455 3.545 14 O -0.549 6.549 15 C -0.115 4.115 16 C 0.130 3.870 17 N -0.549 5.549 18 C 0.072 3.928 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.101 4.101 22 C -0.107 4.107 23 C 0.062 3.938 24 O -0.306 6.306 25 C 0.083 3.917 26 H 0.126 0.874 27 C -0.131 4.131 28 C 0.479 3.521 29 O -0.535 6.535 30 H 0.021 0.979 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.272 0.728 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.160 0.840 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.547 -6.231 -23.560 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.164 3.836 3 H 0.029 0.971 4 C -0.588 4.588 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.278 6.278 13 C 0.300 3.700 14 O -0.440 6.440 15 C -0.153 4.153 16 C 0.008 3.992 17 N -0.274 5.274 18 C -0.022 4.022 19 C -0.155 4.155 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.126 4.126 23 C 0.016 3.984 24 O -0.221 6.221 25 C 0.024 3.976 26 H 0.143 0.857 27 C -0.188 4.188 28 C 0.269 3.731 29 O -0.411 6.411 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.642 -5.648 -23.468 27.248 hybrid contribution -0.556 0.248 1.426 1.550 sum 12.086 -5.400 -22.042 25.712 Atomic orbital electron populations 1.22011 0.96984 1.00383 1.00838 1.20378 0.91889 0.92244 0.79040 0.97098 1.21273 1.33656 1.14054 0.89863 0.91247 1.25863 0.94641 0.95650 1.02227 1.70015 1.36480 1.23639 1.25377 0.85204 0.78916 0.78539 0.76588 1.19036 1.20251 1.18896 1.86476 1.76018 1.43809 1.21545 1.23955 0.74004 0.85665 0.86425 1.90603 1.50005 1.18263 1.85166 1.21659 1.05392 0.99969 0.88320 1.21226 1.02294 0.94197 0.81530 1.45769 1.05052 1.56738 1.19813 1.18384 0.82533 1.06145 0.95096 1.20970 0.93574 1.03035 0.97922 1.21370 0.94189 0.98649 0.98524 1.21428 1.01123 0.97976 0.91380 1.20880 0.88208 1.01308 1.02173 1.18902 0.90894 1.03557 0.85072 1.86217 1.23849 1.79075 1.33005 1.22817 0.83991 0.98381 0.92419 0.85686 1.21743 0.96764 1.03904 0.96374 1.22312 0.86525 0.78602 0.85694 1.90759 1.16113 1.56273 1.77942 0.95958 0.93616 0.89887 0.91920 0.87037 0.85165 0.87932 0.89978 0.85190 0.82858 0.81577 0.82205 0.92179 0.88993 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.65 9.33 71.98 0.67 -6.98 16 2 C 0.22 12.11 2.56 29.85 0.08 12.19 16 3 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 4 C -0.55 -31.37 8.90 25.60 0.23 -31.14 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.92 11.32 21.44 0.24 -52.67 16 8 Si 0.98 42.61 29.54 68.60 2.03 44.64 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 12 O -0.36 -17.62 9.86 -51.42 -0.51 -18.13 16 13 C 0.46 19.15 7.93 71.24 0.56 19.72 16 14 O -0.55 -26.26 15.20 21.97 0.33 -25.93 16 15 C -0.11 -3.44 5.99 29.85 0.18 -3.26 16 16 C 0.13 3.73 4.06 86.38 0.35 4.08 16 17 N -0.55 -13.97 2.72 -630.32 -1.71 -15.68 16 18 C 0.07 1.55 6.38 38.14 0.24 1.79 16 19 C -0.13 -2.54 8.95 22.34 0.20 -2.34 16 20 C -0.11 -1.46 10.04 22.29 0.22 -1.24 16 21 C -0.10 -1.05 10.04 22.30 0.22 -0.83 16 22 C -0.11 -1.39 10.00 22.33 0.22 -1.17 16 23 C 0.06 1.17 6.44 22.58 0.15 1.31 16 24 O -0.31 -5.85 10.09 -93.27 -0.94 -6.79 16 25 C 0.08 1.51 3.68 29.86 0.11 1.62 16 26 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 27 C -0.13 -1.90 9.15 71.98 0.66 -1.24 16 28 C 0.48 12.44 7.38 87.62 0.65 13.08 16 29 O -0.53 -17.22 15.80 -3.07 -0.05 -17.27 16 30 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 4.68 6.07 -2.39 -0.01 4.66 16 33 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.13 3.22 7.19 -2.38 -0.02 3.20 16 36 H 0.10 2.82 7.02 -2.39 -0.02 2.80 16 37 H 0.08 2.74 7.40 -2.38 -0.02 2.72 16 38 H 0.13 2.54 5.99 -2.91 -0.02 2.52 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 1.36 7.86 -2.39 -0.02 1.34 16 44 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -72.93 369.80 5.61 -67.32 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.02 Total: 17.60 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 5.19 Total: 6.92 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.47 Total: -68.36 kcal Atomic # 8 Polarization: -66.96 SS G_CDS: -1.16 Total: -68.12 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.93 5.61 -67.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.435 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds