Wall clock time and date at job start Tue Mar 31 2020 18:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47442 * 2 1 4 4 C 1.50699 * 109.47294 * 239.99267 * 2 1 3 5 5 H 1.08001 * 120.00733 * 245.46121 * 4 2 1 6 6 C 1.37878 * 119.99684 * 65.46582 * 4 2 1 7 7 N 1.31515 * 120.00086 * 9.54878 * 6 4 2 8 8 Si 1.86797 * 119.99984 * 189.54868 * 6 4 2 9 9 H 1.48503 * 109.47188 * 84.99598 * 8 6 4 10 10 H 1.48501 * 109.47098 * 204.99273 * 8 6 4 11 11 H 1.48497 * 109.47143 * 324.99477 * 8 6 4 12 12 O 1.45206 * 109.46982 * 119.99774 * 2 1 3 13 13 C 1.34228 * 116.99934 * 270.00360 * 12 2 1 14 14 O 1.20823 * 120.00122 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00092 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.47097 * 179.97438 * 15 13 12 17 17 N 1.46500 * 109.46953 * 179.97438 * 16 15 13 18 18 C 1.40218 * 120.51206 * 269.97739 * 17 16 15 19 19 C 1.38504 * 120.73815 * 15.47875 * 18 17 16 20 20 C 1.38296 * 119.81017 * 180.02562 * 19 18 17 21 21 C 1.38275 * 120.20028 * 359.97438 * 20 19 18 22 22 C 1.38313 * 120.26045 * 359.97438 * 21 20 19 23 23 C 1.38392 * 119.87299 * 0.03179 * 22 21 20 24 24 O 1.35973 * 120.68445 * 180.02562 * 23 22 21 25 25 C 1.42991 * 116.72001 * 147.07416 * 24 23 22 26 26 H 1.09006 * 109.44694 * 286.41717 * 25 24 23 27 27 C 1.53006 * 109.44289 * 166.48861 * 25 24 23 28 28 C 1.35092 * 120.50929 * 90.00455 * 17 16 15 29 29 O 1.21291 * 120.12954 * 1.66598 * 28 17 16 30 30 H 1.09004 * 109.46953 * 183.66641 * 1 2 3 31 31 H 1.08997 * 109.47613 * 303.66668 * 1 2 3 32 32 H 1.08998 * 109.46818 * 63.67288 * 1 2 3 33 33 H 0.97001 * 119.99818 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47122 * 59.99724 * 15 13 12 35 35 H 1.08994 * 109.47193 * 299.99698 * 15 13 12 36 36 H 1.09000 * 109.47112 * 60.00454 * 16 15 13 37 37 H 1.08995 * 109.47367 * 299.99587 * 16 15 13 38 38 H 1.07995 * 120.09853 * 0.02562 * 19 18 17 39 39 H 1.07993 * 119.89782 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.87265 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.06664 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.46472 * 299.93131 * 27 25 24 43 43 H 1.08996 * 109.46959 * 179.97438 * 27 25 24 44 44 H 1.08996 * 109.47215 * 59.93051 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5786 -1.6372 -1.1337 6 6 1.7947 -0.1775 -2.4795 7 7 1.2993 1.0354 -2.5936 8 14 2.1763 -1.1782 -4.0100 9 1 1.0244 -2.0613 -4.3241 10 1 2.4230 -0.2616 -5.1520 11 1 3.3848 -2.0073 -3.7707 12 8 2.0140 -0.6845 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9981 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 6 2.8641 0.4894 4.6369 17 7 3.3517 -0.1338 5.8698 18 6 2.4497 -0.6372 6.8180 19 6 1.1214 -0.8502 6.4882 20 6 0.2482 -1.3469 7.4386 21 6 0.6976 -1.6313 8.7150 22 6 2.0231 -1.4217 9.0501 23 6 2.9029 -0.9248 8.1044 24 8 4.2094 -0.7130 8.4158 25 6 5.1607 -0.9119 7.3670 26 1 5.2779 -1.9796 7.1810 27 6 6.5078 -0.3163 7.7815 28 6 4.6773 -0.2319 6.1109 29 8 5.4754 0.2239 5.3195 30 1 -0.3633 -1.0256 0.0657 31 1 -0.3634 0.5697 0.8552 32 1 -0.3633 0.4558 -0.9211 33 1 1.1317 1.4102 -3.4724 34 1 3.6882 -1.0398 3.3633 35 1 2.0104 -1.3371 3.8775 36 1 1.8952 0.9526 4.8230 37 1 3.5732 1.2493 4.3085 38 1 0.7687 -0.6291 5.4917 39 1 -0.7876 -1.5139 7.1829 40 1 0.0112 -2.0194 9.4530 41 1 2.3708 -1.6453 10.0478 42 1 6.3911 0.7512 7.9676 43 1 7.2334 -0.4681 6.9825 44 1 6.8581 -0.8072 8.6894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:06 Heat of formation + Delta-G solvation = -129.227297 kcal Electronic energy + Delta-G solvation = -28503.321865 eV Core-core repulsion = 24386.283142 eV Total energy + Delta-G solvation = -4117.038723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92501 -39.66945 -39.16955 -38.07835 -36.35503 -35.66775 -33.25714 -32.47998 -31.96688 -30.57344 -29.77465 -29.10376 -26.16484 -25.30699 -23.78937 -23.64502 -22.56094 -21.40768 -19.70711 -19.64724 -19.46302 -17.77003 -17.29368 -16.86922 -16.63666 -15.80982 -15.75636 -15.56143 -15.50212 -14.96298 -14.80703 -14.66992 -14.40595 -14.19953 -13.62830 -13.33655 -13.31766 -12.91040 -12.69106 -12.59869 -12.50999 -12.23936 -12.13778 -11.89404 -11.52123 -11.46077 -11.38994 -11.18494 -11.06910 -10.85512 -10.67294 -10.50078 -10.33847 -10.17060 -9.74028 -9.56119 -9.00239 -8.98426 -8.50644 -8.16094 -6.22576 -4.26628 0.75966 0.93351 2.00299 2.19545 2.85872 2.89391 3.24110 3.29315 3.32420 3.38227 3.56941 3.70624 4.30777 4.33144 4.37872 4.51619 4.65210 4.76843 4.84446 4.85871 4.95293 5.07471 5.11404 5.28093 5.29887 5.31013 5.39612 5.59157 5.63207 5.72325 5.75385 5.83107 5.87443 6.09214 6.15405 6.31648 6.54539 6.61142 6.76372 6.80764 7.03375 7.06240 7.47064 7.51518 7.63587 7.82691 8.08582 8.56444 8.85414 9.37696 10.86765 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.002624 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.986907 B =10669.277757 C =11659.771182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.213 3.787 3 H 0.054 0.946 4 C -0.526 4.526 5 H 0.069 0.931 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.909 3.091 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.272 1.272 12 O -0.355 6.355 13 C 0.459 3.541 14 O -0.520 6.520 15 C -0.134 4.134 16 C 0.121 3.879 17 N -0.550 5.550 18 C 0.099 3.901 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.109 4.109 23 C 0.076 3.924 24 O -0.303 6.303 25 C 0.079 3.921 26 H 0.104 0.896 27 C -0.135 4.135 28 C 0.487 3.513 29 O -0.495 6.495 30 H 0.039 0.961 31 H 0.021 0.979 32 H 0.083 0.917 33 H 0.267 0.733 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -6.460 25.415 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.563 4.563 5 H 0.087 0.913 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.736 3.264 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.271 6.271 13 C 0.301 3.699 14 O -0.411 6.411 15 C -0.173 4.173 16 C 0.000 4.000 17 N -0.274 5.274 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.128 4.128 23 C 0.030 3.970 24 O -0.218 6.218 25 C 0.020 3.980 26 H 0.122 0.878 27 C -0.192 4.192 28 C 0.275 3.725 29 O -0.368 6.368 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.198 -5.611 24.869 25.589 hybrid contribution -0.074 -0.388 -1.244 1.305 sum 2.124 -5.999 23.626 24.468 Atomic orbital electron populations 1.22082 0.97855 0.99561 1.01138 1.20673 0.90996 0.94552 0.77746 0.92791 1.20976 1.37334 1.09040 0.88999 0.91296 1.24904 0.95012 0.94793 0.99093 1.69987 1.43978 1.13779 1.24574 0.86335 0.78949 0.79742 0.81413 1.20209 1.21023 1.19637 1.86485 1.75616 1.43649 1.21324 1.22940 0.75002 0.85911 0.86063 1.90622 1.48897 1.16739 1.84837 1.21661 1.04516 0.99767 0.91392 1.21483 1.02624 0.94863 0.80985 1.45810 1.05284 1.56804 1.19518 1.18181 0.91351 1.01373 0.88660 1.20850 0.90951 1.01506 1.01091 1.21045 0.99894 0.98826 0.92881 1.21002 0.94740 1.00650 0.96860 1.20514 0.92850 1.00022 0.99422 1.18600 0.84491 1.01820 0.92108 1.86225 1.13013 1.85814 1.36717 1.22676 0.90385 1.01107 0.83826 0.87823 1.21719 0.91946 1.02245 1.03281 1.21595 0.81924 0.80292 0.88697 1.90793 1.53191 1.45131 1.47672 0.94174 0.96028 0.89874 0.92339 0.87687 0.87938 0.88375 0.87596 0.84580 0.84911 0.84918 0.84472 0.91019 0.88871 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.43 37.16 0.35 -3.31 16 2 C 0.21 5.71 2.42 -27.88 -0.07 5.64 16 3 H 0.05 1.62 7.10 -51.93 -0.37 1.25 16 4 C -0.53 -14.87 8.82 -34.44 -0.30 -15.17 16 5 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 6 C 0.06 1.80 5.17 -17.82 -0.09 1.71 16 7 N -0.89 -25.51 12.16 55.43 0.67 -24.84 16 8 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 12 O -0.35 -8.41 9.86 -39.25 -0.39 -8.79 16 13 C 0.46 9.38 7.93 36.00 0.29 9.66 16 14 O -0.52 -11.95 15.20 -18.75 -0.28 -12.24 16 15 C -0.13 -2.00 5.99 -27.88 -0.17 -2.17 16 16 C 0.12 1.69 4.06 -4.04 -0.02 1.68 16 17 N -0.55 -6.94 2.72 -113.20 -0.31 -7.25 16 18 C 0.10 1.10 6.38 -83.49 -0.53 0.56 16 19 C -0.12 -1.20 8.95 -39.46 -0.35 -1.56 16 20 C -0.11 -0.84 10.04 -39.55 -0.40 -1.23 16 21 C -0.11 -0.78 10.04 -39.54 -0.40 -1.18 16 22 C -0.11 -0.87 10.00 -39.50 -0.39 -1.26 16 23 C 0.08 0.78 6.44 -39.09 -0.25 0.53 16 24 O -0.30 -3.13 10.09 -19.66 -0.20 -3.32 16 25 C 0.08 0.77 3.69 -27.83 -0.10 0.67 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 27 C -0.13 -1.06 9.14 37.16 0.34 -0.72 16 28 C 0.49 6.31 7.38 -10.80 -0.08 6.23 16 29 O -0.49 -7.81 15.80 5.55 0.09 -7.72 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 2.18 6.83 -51.93 -0.35 1.82 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.10 1.28 7.19 -51.93 -0.37 0.91 16 36 H 0.10 1.28 7.02 -51.93 -0.36 0.92 16 37 H 0.11 1.68 7.41 -51.93 -0.38 1.29 16 38 H 0.14 1.31 5.99 -52.49 -0.31 0.99 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -33.18 371.13 -7.95 -41.12 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.92 Total: 1.21 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.18 Total: 0.09 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.37 Total: -32.08 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.78 Total: -32.08 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.18 -7.95 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.105 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds