Wall clock time and date at job start Tue Mar 31 2020 18:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47442 * 2 1 4 4 C 1.50699 * 109.47294 * 239.99267 * 2 1 3 5 5 H 1.08001 * 120.00733 * 245.46121 * 4 2 1 6 6 C 1.37878 * 119.99684 * 65.46582 * 4 2 1 7 7 N 1.31515 * 120.00086 * 9.54878 * 6 4 2 8 8 Si 1.86797 * 119.99984 * 189.54868 * 6 4 2 9 9 H 1.48503 * 109.47188 * 84.99598 * 8 6 4 10 10 H 1.48501 * 109.47098 * 204.99273 * 8 6 4 11 11 H 1.48497 * 109.47143 * 324.99477 * 8 6 4 12 12 O 1.45206 * 109.46982 * 119.99774 * 2 1 3 13 13 C 1.34228 * 116.99934 * 270.00360 * 12 2 1 14 14 O 1.20823 * 120.00122 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00092 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.47097 * 179.97438 * 15 13 12 17 17 N 1.46500 * 109.46953 * 179.97438 * 16 15 13 18 18 C 1.40218 * 120.51206 * 269.97739 * 17 16 15 19 19 C 1.38504 * 120.73815 * 15.47875 * 18 17 16 20 20 C 1.38296 * 119.81017 * 180.02562 * 19 18 17 21 21 C 1.38275 * 120.20028 * 359.97438 * 20 19 18 22 22 C 1.38313 * 120.26045 * 359.97438 * 21 20 19 23 23 C 1.38392 * 119.87299 * 0.03179 * 22 21 20 24 24 O 1.35973 * 120.68445 * 180.02562 * 23 22 21 25 25 C 1.42991 * 116.72001 * 147.07416 * 24 23 22 26 26 H 1.09006 * 109.44694 * 286.41717 * 25 24 23 27 27 C 1.53006 * 109.44289 * 166.48861 * 25 24 23 28 28 C 1.35092 * 120.50929 * 90.00455 * 17 16 15 29 29 O 1.21291 * 120.12954 * 1.66598 * 28 17 16 30 30 H 1.09004 * 109.46953 * 183.66641 * 1 2 3 31 31 H 1.08997 * 109.47613 * 303.66668 * 1 2 3 32 32 H 1.08998 * 109.46818 * 63.67288 * 1 2 3 33 33 H 0.97001 * 119.99818 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47122 * 59.99724 * 15 13 12 35 35 H 1.08994 * 109.47193 * 299.99698 * 15 13 12 36 36 H 1.09000 * 109.47112 * 60.00454 * 16 15 13 37 37 H 1.08995 * 109.47367 * 299.99587 * 16 15 13 38 38 H 1.07995 * 120.09853 * 0.02562 * 19 18 17 39 39 H 1.07993 * 119.89782 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.87265 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.06664 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.46472 * 299.93131 * 27 25 24 43 43 H 1.08996 * 109.46959 * 179.97438 * 27 25 24 44 44 H 1.08996 * 109.47215 * 59.93051 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5786 -1.6372 -1.1337 6 6 1.7947 -0.1775 -2.4795 7 7 1.2993 1.0354 -2.5936 8 14 2.1763 -1.1782 -4.0100 9 1 1.0244 -2.0613 -4.3241 10 1 2.4230 -0.2616 -5.1520 11 1 3.3848 -2.0073 -3.7707 12 8 2.0140 -0.6845 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9981 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 6 2.8641 0.4894 4.6369 17 7 3.3517 -0.1338 5.8698 18 6 2.4497 -0.6372 6.8180 19 6 1.1214 -0.8502 6.4882 20 6 0.2482 -1.3469 7.4386 21 6 0.6976 -1.6313 8.7150 22 6 2.0231 -1.4217 9.0501 23 6 2.9029 -0.9248 8.1044 24 8 4.2094 -0.7130 8.4158 25 6 5.1607 -0.9119 7.3670 26 1 5.2779 -1.9796 7.1810 27 6 6.5078 -0.3163 7.7815 28 6 4.6773 -0.2319 6.1109 29 8 5.4754 0.2239 5.3195 30 1 -0.3633 -1.0256 0.0657 31 1 -0.3634 0.5697 0.8552 32 1 -0.3633 0.4558 -0.9211 33 1 1.1317 1.4102 -3.4724 34 1 3.6882 -1.0398 3.3633 35 1 2.0104 -1.3371 3.8775 36 1 1.8952 0.9526 4.8230 37 1 3.5732 1.2493 4.3085 38 1 0.7687 -0.6291 5.4917 39 1 -0.7876 -1.5139 7.1829 40 1 0.0112 -2.0194 9.4530 41 1 2.3708 -1.6453 10.0478 42 1 6.3911 0.7512 7.9676 43 1 7.2334 -0.4681 6.9825 44 1 6.8581 -0.8072 8.6894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:05 Heat of formation + Delta-G solvation = -148.419094 kcal Electronic energy + Delta-G solvation = -28504.154084 eV Core-core repulsion = 24386.283142 eV Total energy + Delta-G solvation = -4117.870942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.77814 -41.39736 -40.06496 -38.88581 -37.82975 -36.99151 -35.33528 -33.34056 -33.07036 -31.73368 -31.26021 -29.91078 -27.48881 -27.21545 -24.80640 -24.37134 -23.61439 -22.91604 -21.38901 -20.52257 -20.30057 -19.07249 -18.67429 -18.27273 -17.95142 -17.32958 -17.25868 -16.59994 -16.48627 -16.38441 -15.81309 -15.65112 -15.44436 -15.36035 -14.75909 -14.60328 -14.41361 -14.17752 -13.97239 -13.90871 -13.50902 -13.32772 -13.28060 -13.14971 -12.98782 -12.84537 -12.78925 -12.52843 -12.47338 -12.21747 -12.20135 -12.12813 -11.69033 -11.58185 -11.42109 -11.09312 -11.03482 -10.63517 -9.67539 -8.95577 -8.34705 -6.48712 0.03000 0.28309 1.09423 1.19836 1.23338 1.39917 1.42199 1.52739 1.96768 2.18079 2.39583 2.72149 2.82013 2.97335 3.48333 3.57832 3.63104 3.74995 3.83638 3.87191 4.03560 4.17792 4.25269 4.32445 4.37679 4.49822 4.50480 4.62160 4.66656 4.72846 4.72926 4.76363 4.79927 4.96394 5.08359 5.11532 5.25399 5.28621 5.43739 5.53600 5.54183 5.69803 5.79112 5.80832 6.02932 6.26150 6.51369 6.55663 6.86608 7.22010 8.75244 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.002624 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.986907 B =10669.277757 C =11659.771182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.214 3.786 3 H 0.011 0.989 4 C -0.554 4.554 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.980 3.020 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.266 1.266 12 O -0.362 6.362 13 C 0.455 3.545 14 O -0.549 6.549 15 C -0.115 4.115 16 C 0.130 3.870 17 N -0.549 5.549 18 C 0.071 3.929 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.101 4.101 22 C -0.107 4.107 23 C 0.061 3.939 24 O -0.307 6.307 25 C 0.083 3.917 26 H 0.126 0.874 27 C -0.131 4.131 28 C 0.478 3.522 29 O -0.536 6.536 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.272 0.728 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.132 0.868 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -8.829 27.246 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.591 4.591 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.803 3.197 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.190 1.190 12 O -0.278 6.278 13 C 0.299 3.701 14 O -0.440 6.440 15 C -0.153 4.153 16 C 0.007 3.993 17 N -0.274 5.274 18 C -0.022 4.022 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.126 4.126 23 C 0.015 3.985 24 O -0.222 6.222 25 C 0.024 3.976 26 H 0.143 0.857 27 C -0.188 4.188 28 C 0.268 3.732 29 O -0.412 6.412 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.184 0.816 41 H 0.177 0.823 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.304 -7.996 26.754 27.953 hybrid contribution 0.135 0.381 -1.670 1.718 sum 1.439 -7.615 25.084 26.254 Atomic orbital electron populations 1.21896 0.96309 1.00517 1.00584 1.20405 0.92190 0.92372 0.78974 0.97134 1.21271 1.38333 1.09314 0.90172 0.91501 1.25850 0.94382 0.95699 1.02250 1.70104 1.44452 1.15268 1.25640 0.85235 0.79230 0.78224 0.76985 1.18774 1.20399 1.19040 1.86472 1.76083 1.43767 1.21496 1.23950 0.73928 0.85675 0.86505 1.90607 1.50051 1.18160 1.85215 1.21655 1.04984 1.00201 0.88479 1.21226 1.02239 0.94119 0.81666 1.45772 1.05716 1.56740 1.19153 1.18402 0.91671 1.03245 0.88852 1.20980 0.90790 1.02042 1.01632 1.21377 1.00633 0.97771 0.92844 1.21430 0.94720 0.98757 0.97036 1.20877 0.92936 0.98953 0.99837 1.18915 0.84733 1.02597 0.92282 1.86215 1.13280 1.86105 1.36585 1.22818 0.90668 1.01895 0.82170 0.85665 1.21742 0.91033 1.01701 1.04340 1.22342 0.81680 0.79785 0.89419 1.90766 1.54112 1.47038 1.49258 0.92518 0.94944 0.91761 0.91940 0.87378 0.84815 0.87696 0.90249 0.85000 0.82701 0.81581 0.82291 0.92198 0.89067 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 9.43 71.98 0.68 -6.08 16 2 C 0.21 11.84 2.42 29.85 0.07 11.91 16 3 H 0.01 0.68 7.10 -2.39 -0.02 0.66 16 4 C -0.55 -31.86 8.82 25.60 0.23 -31.63 16 5 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 6 C 0.02 1.03 5.17 84.65 0.44 1.47 16 7 N -0.92 -53.77 12.16 21.45 0.26 -53.51 16 8 Si 0.98 43.24 29.55 68.60 2.03 45.27 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 O -0.36 -17.52 9.86 -51.39 -0.51 -18.03 16 13 C 0.46 19.12 7.93 71.24 0.56 19.68 16 14 O -0.55 -26.31 15.20 21.97 0.33 -25.98 16 15 C -0.11 -3.43 5.99 29.85 0.18 -3.25 16 16 C 0.13 3.73 4.06 86.38 0.35 4.08 16 17 N -0.55 -13.99 2.72 -630.26 -1.71 -15.70 16 18 C 0.07 1.52 6.38 38.14 0.24 1.76 16 19 C -0.13 -2.40 8.95 22.35 0.20 -2.20 16 20 C -0.11 -1.34 10.04 22.29 0.22 -1.12 16 21 C -0.10 -1.00 10.04 22.30 0.22 -0.77 16 22 C -0.11 -1.36 10.00 22.32 0.22 -1.14 16 23 C 0.06 1.14 6.44 22.59 0.15 1.28 16 24 O -0.31 -5.89 10.09 -93.24 -0.94 -6.83 16 25 C 0.08 1.55 3.69 29.88 0.11 1.66 16 26 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 27 C -0.13 -1.96 9.14 71.98 0.66 -1.31 16 28 C 0.48 12.62 7.38 87.64 0.65 13.27 16 29 O -0.54 -17.72 15.80 -3.06 -0.05 -17.77 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 3.43 6.83 -2.39 -0.02 3.42 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.13 3.17 7.19 -2.39 -0.02 3.16 16 36 H 0.10 2.82 7.02 -2.39 -0.02 2.81 16 37 H 0.08 2.70 7.41 -2.39 -0.02 2.69 16 38 H 0.13 2.39 5.99 -2.91 -0.02 2.38 16 39 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 41 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.41 7.86 -2.39 -0.02 1.39 16 44 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -74.48 371.13 5.61 -68.86 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.02 Total: 16.07 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.18 Total: 7.61 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.45 Total: -69.21 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -1.16 Total: -68.59 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.48 5.61 -68.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.555 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds