Wall clock time and date at job start Tue Mar 31 2020 18:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47211 * 2 1 4 4 C 1.50702 * 109.47098 * 239.99917 * 2 1 3 5 5 H 1.07998 * 120.00186 * 240.00088 * 4 2 1 6 6 C 1.37884 * 119.99667 * 59.99852 * 4 2 1 7 7 N 1.31510 * 120.00323 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99672 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47434 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47247 * 120.00131 * 8 6 4 11 11 H 1.48502 * 109.47306 * 240.00020 * 8 6 4 12 12 O 1.45203 * 109.47313 * 120.00203 * 2 1 3 13 13 C 1.34226 * 116.99798 * 270.00139 * 12 2 1 14 14 O 1.20824 * 119.99959 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99900 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 12 17 17 N 1.46499 * 109.46840 * 179.97438 * 16 15 13 18 18 C 1.40222 * 120.50825 * 90.00416 * 17 16 15 19 19 C 1.38510 * 120.73536 * 15.45932 * 18 17 16 20 20 C 1.38285 * 119.80889 * 180.02562 * 19 18 17 21 21 C 1.38283 * 120.20476 * 0.02956 * 20 19 18 22 22 C 1.38316 * 120.25302 * 359.96928 * 21 20 19 23 23 C 1.38392 * 119.87799 * 359.97438 * 22 21 20 24 24 O 1.35978 * 120.66406 * 180.10055 * 23 22 21 25 25 C 1.43008 * 116.71528 * 147.16083 * 24 23 22 26 26 H 1.08999 * 109.44426 * 166.43749 * 25 24 23 27 27 C 1.53005 * 109.44050 * 286.33640 * 25 24 23 28 28 C 1.35092 * 120.50978 * 269.72517 * 17 16 15 29 29 O 1.21286 * 120.13205 * 1.66667 * 28 17 16 30 30 H 1.08999 * 109.46963 * 299.99977 * 1 2 3 31 31 H 1.08994 * 109.47647 * 59.99997 * 1 2 3 32 32 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 33 33 H 0.96994 * 120.00198 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46980 * 59.99650 * 15 13 12 35 35 H 1.08992 * 109.47158 * 299.99756 * 15 13 12 36 36 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 37 37 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 38 38 H 1.07996 * 120.09401 * 0.04275 * 19 18 17 39 39 H 1.08005 * 119.89763 * 180.02562 * 20 19 18 40 40 H 1.07992 * 119.87264 * 179.97438 * 21 20 19 41 41 H 1.08005 * 120.05905 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46751 * 60.00008 * 27 25 24 43 43 H 1.08996 * 109.47010 * 179.97438 * 27 25 24 44 44 H 1.08997 * 109.46844 * 300.00410 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5867 -4.8161 11 1 3.1464 -0.1874 -4.8166 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2518 2.2503 15 6 2.7194 -0.5771 3.5491 16 6 2.8644 0.4891 4.6368 17 7 3.3521 -0.1342 5.8696 18 6 4.7280 -0.2360 6.1198 19 6 5.6373 0.5125 5.3908 20 6 6.9901 0.3967 5.6531 21 6 7.4363 -0.4636 6.6395 22 6 6.5331 -1.2136 7.3709 23 6 5.1777 -1.1023 7.1149 24 8 4.2756 -1.8305 7.8256 25 6 3.0032 -1.2226 8.0636 26 1 2.3018 -1.9768 8.4202 27 6 3.1523 -0.1264 9.1205 28 6 2.4830 -0.6146 6.7855 29 8 1.2890 -0.5603 6.5791 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.7088 1.1614 -3.4844 34 1 3.6885 -1.0401 3.3630 35 1 2.0106 -1.3373 3.8773 36 1 3.5734 1.2491 4.3083 37 1 1.8955 0.9524 4.8230 38 1 5.2908 1.1848 4.6199 39 1 7.7004 0.9800 5.0858 40 1 8.4940 -0.5501 6.8397 41 1 6.8851 -1.8843 8.1409 42 1 3.8548 0.6276 8.7653 43 1 2.1829 0.3376 9.3020 44 1 3.5257 -0.5632 10.0467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:09 Heat of formation + Delta-G solvation = -127.345028 kcal Electronic energy + Delta-G solvation = -28607.106541 eV Core-core repulsion = 24490.149440 eV Total energy + Delta-G solvation = -4116.957101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99530 -39.65484 -39.13278 -38.09163 -36.32766 -35.64525 -33.29134 -32.49210 -31.81415 -30.65806 -29.67237 -29.10485 -26.08165 -25.32406 -24.28650 -23.65997 -22.50213 -21.26809 -19.60387 -19.52664 -19.48698 -17.80504 -16.99665 -16.73452 -16.44617 -16.10905 -15.78518 -15.68772 -15.54696 -14.99688 -14.83310 -14.54204 -14.49046 -14.30223 -13.62538 -13.48239 -13.26541 -12.90028 -12.87714 -12.65177 -12.44764 -12.26612 -12.08314 -11.79083 -11.59725 -11.47814 -11.27354 -11.14410 -11.07736 -10.85362 -10.71033 -10.37886 -10.30031 -10.12701 -9.72022 -9.56642 -8.99026 -8.91963 -8.51537 -8.14774 -6.20255 -4.27237 0.76944 0.94603 2.02275 2.15962 2.91488 2.92037 3.22464 3.29102 3.33793 3.37441 3.60052 3.70420 4.29508 4.32612 4.35334 4.47618 4.65538 4.77779 4.81432 4.87787 4.96219 5.03341 5.12622 5.13085 5.26630 5.31168 5.38799 5.53692 5.60759 5.64584 5.77631 5.85689 5.89236 6.09451 6.16563 6.31474 6.61018 6.62626 6.88215 6.89795 7.03762 7.14017 7.45402 7.57934 7.70716 7.90674 8.11851 8.58241 8.85393 9.38290 10.87254 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017427 B = 0.002681 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.279044 B =10441.325060 C =11395.562832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.355 6.355 13 C 0.460 3.540 14 O -0.523 6.523 15 C -0.132 4.132 16 C 0.121 3.879 17 N -0.548 5.548 18 C 0.099 3.901 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.110 4.110 23 C 0.078 3.922 24 O -0.299 6.299 25 C 0.080 3.920 26 H 0.151 0.849 27 C -0.176 4.176 28 C 0.490 3.510 29 O -0.500 6.500 30 H 0.016 0.984 31 H 0.100 0.900 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.563 -2.215 23.678 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.270 6.270 13 C 0.302 3.698 14 O -0.414 6.414 15 C -0.171 4.171 16 C 0.000 4.000 17 N -0.272 5.272 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.129 4.129 23 C 0.031 3.969 24 O -0.214 6.214 25 C 0.021 3.979 26 H 0.168 0.832 27 C -0.234 4.234 28 C 0.278 3.722 29 O -0.374 6.374 30 H 0.035 0.965 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.641 -1.904 23.414 25.789 hybrid contribution 0.037 -0.134 -1.084 1.093 sum 10.677 -2.038 22.330 24.835 Atomic orbital electron populations 1.22165 0.97505 1.00183 1.01464 1.20673 0.91461 0.93914 0.77698 0.93480 1.21071 1.32491 1.13489 0.88873 0.91247 1.24897 0.94919 0.95100 0.99099 1.69905 1.36082 1.22574 1.24109 0.86213 0.78647 0.79495 0.81745 1.19456 1.20682 1.20732 1.86490 1.75554 1.43663 1.21339 1.22945 0.74952 0.85856 0.85998 1.90607 1.49098 1.16844 1.84846 1.21592 1.04383 0.99942 0.91179 1.21495 1.02914 0.94564 0.81052 1.45764 1.04051 1.57572 1.19845 1.18157 0.83472 0.99675 0.98272 1.20849 0.92752 0.99812 1.01006 1.21040 0.94703 0.98970 0.97958 1.21009 0.99639 0.96513 0.96057 1.20527 0.89419 1.01425 1.01496 1.18587 0.90210 0.94797 0.93275 1.86292 1.22857 1.41315 1.70959 1.22911 0.84652 0.98078 0.92257 0.83181 1.22339 1.04105 0.98108 0.98829 1.21509 0.86810 0.78188 0.85679 1.90803 1.14746 1.54432 1.77384 0.96470 0.88180 0.94400 0.92424 0.87830 0.87796 0.88297 0.87769 0.84483 0.84940 0.84941 0.84482 0.91511 0.89870 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.33 37.16 0.35 -3.69 16 2 C 0.21 5.85 2.56 -27.88 -0.07 5.78 16 3 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 O -0.35 -8.59 9.86 -39.25 -0.39 -8.98 16 13 C 0.46 9.59 7.93 36.01 0.29 9.87 16 14 O -0.52 -12.04 15.20 -18.75 -0.28 -12.33 16 15 C -0.13 -2.05 6.14 -27.88 -0.17 -2.22 16 16 C 0.12 1.67 4.50 -4.04 -0.02 1.65 16 17 N -0.55 -6.82 2.72 -113.19 -0.31 -7.13 16 18 C 0.10 1.08 6.39 -83.49 -0.53 0.55 16 19 C -0.12 -1.20 9.36 -39.46 -0.37 -1.57 16 20 C -0.11 -0.84 10.04 -39.55 -0.40 -1.24 16 21 C -0.11 -0.79 10.04 -39.54 -0.40 -1.19 16 22 C -0.11 -0.88 10.00 -39.50 -0.39 -1.27 16 23 C 0.08 0.79 5.85 -39.10 -0.23 0.56 16 24 O -0.30 -3.04 10.18 -19.67 -0.20 -3.24 16 25 C 0.08 0.74 3.82 -27.84 -0.11 0.64 16 26 H 0.15 1.12 8.14 -51.93 -0.42 0.69 16 27 C -0.18 -1.25 9.29 37.16 0.35 -0.91 16 28 C 0.49 6.24 6.91 -10.80 -0.07 6.16 16 29 O -0.50 -7.90 16.76 5.55 0.09 -7.80 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 2.75 6.07 -51.93 -0.32 2.44 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.10 1.25 5.92 -51.93 -0.31 0.94 16 37 H 0.10 1.60 7.44 -51.93 -0.39 1.21 16 38 H 0.14 1.29 6.12 -52.49 -0.32 0.97 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.07 0.52 7.81 -51.93 -0.41 0.12 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -33.20 371.05 -7.95 -41.16 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.88 Total: 1.69 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.19 Total: -0.34 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.32 Total: -31.89 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.78 Total: -32.35 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.20 -7.95 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.189 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds