Wall clock time and date at job start Tue Mar 31 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47211 * 2 1 4 4 C 1.50702 * 109.47098 * 239.99917 * 2 1 3 5 5 H 1.07998 * 120.00186 * 240.00088 * 4 2 1 6 6 C 1.37884 * 119.99667 * 59.99852 * 4 2 1 7 7 N 1.31510 * 120.00323 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99672 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47434 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47247 * 120.00131 * 8 6 4 11 11 H 1.48502 * 109.47306 * 240.00020 * 8 6 4 12 12 O 1.45203 * 109.47313 * 120.00203 * 2 1 3 13 13 C 1.34226 * 116.99798 * 270.00139 * 12 2 1 14 14 O 1.20824 * 119.99959 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99900 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 12 17 17 N 1.46499 * 109.46840 * 179.97438 * 16 15 13 18 18 C 1.40222 * 120.50825 * 90.00416 * 17 16 15 19 19 C 1.38510 * 120.73536 * 15.45932 * 18 17 16 20 20 C 1.38285 * 119.80889 * 180.02562 * 19 18 17 21 21 C 1.38283 * 120.20476 * 0.02956 * 20 19 18 22 22 C 1.38316 * 120.25302 * 359.96928 * 21 20 19 23 23 C 1.38392 * 119.87799 * 359.97438 * 22 21 20 24 24 O 1.35978 * 120.66406 * 180.10055 * 23 22 21 25 25 C 1.43008 * 116.71528 * 147.16083 * 24 23 22 26 26 H 1.08999 * 109.44426 * 166.43749 * 25 24 23 27 27 C 1.53005 * 109.44050 * 286.33640 * 25 24 23 28 28 C 1.35092 * 120.50978 * 269.72517 * 17 16 15 29 29 O 1.21286 * 120.13205 * 1.66667 * 28 17 16 30 30 H 1.08999 * 109.46963 * 299.99977 * 1 2 3 31 31 H 1.08994 * 109.47647 * 59.99997 * 1 2 3 32 32 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 33 33 H 0.96994 * 120.00198 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46980 * 59.99650 * 15 13 12 35 35 H 1.08992 * 109.47158 * 299.99756 * 15 13 12 36 36 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 37 37 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 38 38 H 1.07996 * 120.09401 * 0.04275 * 19 18 17 39 39 H 1.08005 * 119.89763 * 180.02562 * 20 19 18 40 40 H 1.07992 * 119.87264 * 179.97438 * 21 20 19 41 41 H 1.08005 * 120.05905 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46751 * 60.00008 * 27 25 24 43 43 H 1.08996 * 109.47010 * 179.97438 * 27 25 24 44 44 H 1.08997 * 109.46844 * 300.00410 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5867 -4.8161 11 1 3.1464 -0.1874 -4.8166 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2518 2.2503 15 6 2.7194 -0.5771 3.5491 16 6 2.8644 0.4891 4.6368 17 7 3.3521 -0.1342 5.8696 18 6 4.7280 -0.2360 6.1198 19 6 5.6373 0.5125 5.3908 20 6 6.9901 0.3967 5.6531 21 6 7.4363 -0.4636 6.6395 22 6 6.5331 -1.2136 7.3709 23 6 5.1777 -1.1023 7.1149 24 8 4.2756 -1.8305 7.8256 25 6 3.0032 -1.2226 8.0636 26 1 2.3018 -1.9768 8.4202 27 6 3.1523 -0.1264 9.1205 28 6 2.4830 -0.6146 6.7855 29 8 1.2890 -0.5603 6.5791 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.7088 1.1614 -3.4844 34 1 3.6885 -1.0401 3.3630 35 1 2.0106 -1.3373 3.8773 36 1 3.5734 1.2491 4.3083 37 1 1.8955 0.9524 4.8230 38 1 5.2908 1.1848 4.6199 39 1 7.7004 0.9800 5.0858 40 1 8.4940 -0.5501 6.8397 41 1 6.8851 -1.8843 8.1409 42 1 3.8548 0.6276 8.7653 43 1 2.1829 0.3376 9.3020 44 1 3.5257 -0.5632 10.0467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:08 Heat of formation + Delta-G solvation = -146.356455 kcal Electronic energy + Delta-G solvation = -28607.930938 eV Core-core repulsion = 24490.149440 eV Total energy + Delta-G solvation = -4117.781499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.83252 -41.41106 -40.04154 -38.87473 -37.84676 -36.96924 -35.38229 -33.43743 -32.81363 -31.63668 -31.33592 -29.96797 -27.52898 -27.14046 -25.08432 -24.52457 -23.72606 -22.73278 -21.36132 -20.35648 -20.27499 -19.08914 -18.71547 -18.23585 -17.47123 -17.38757 -17.21089 -16.77671 -16.55821 -16.38175 -16.01047 -15.70099 -15.46153 -15.25398 -14.84065 -14.69945 -14.47791 -14.14150 -14.04489 -13.78749 -13.54148 -13.44088 -13.22761 -13.13086 -13.03794 -12.86313 -12.85078 -12.49041 -12.43723 -12.17353 -12.16914 -12.14231 -11.71496 -11.62673 -11.42226 -11.03392 -11.03147 -10.63825 -9.66931 -8.94083 -8.31863 -6.49180 0.04186 0.29072 1.10982 1.19313 1.20415 1.40953 1.41683 1.55805 2.01819 2.20650 2.39850 2.72338 2.82016 2.98836 3.48020 3.55724 3.67524 3.71962 3.86911 3.88704 3.99860 4.15119 4.26069 4.32237 4.38740 4.47892 4.48563 4.56843 4.65081 4.67070 4.73015 4.73732 4.77853 4.95787 5.01970 5.09685 5.26426 5.28764 5.44673 5.54724 5.57056 5.69238 5.79988 5.85830 6.02062 6.27306 6.50644 6.55122 6.85356 7.22469 8.76226 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017427 B = 0.002681 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.279044 B =10441.325060 C =11395.562832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.217 3.783 3 H 0.012 0.988 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.985 3.015 9 H -0.263 1.263 10 H -0.272 1.272 11 H -0.274 1.274 12 O -0.364 6.364 13 C 0.457 3.543 14 O -0.547 6.547 15 C -0.114 4.114 16 C 0.128 3.872 17 N -0.547 5.547 18 C 0.072 3.928 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.101 4.101 22 C -0.109 4.109 23 C 0.065 3.935 24 O -0.304 6.304 25 C 0.084 3.916 26 H 0.168 0.832 27 C -0.169 4.169 28 C 0.483 3.517 29 O -0.542 6.542 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.272 0.728 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 -3.517 24.611 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.164 3.836 3 H 0.030 0.970 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.808 3.192 9 H -0.187 1.187 10 H -0.197 1.197 11 H -0.199 1.199 12 O -0.280 6.280 13 C 0.301 3.699 14 O -0.439 6.439 15 C -0.153 4.153 16 C 0.006 3.994 17 N -0.271 5.271 18 C -0.021 4.021 19 C -0.156 4.156 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.127 4.127 23 C 0.019 3.981 24 O -0.219 6.219 25 C 0.025 3.975 26 H 0.185 0.815 27 C -0.226 4.226 28 C 0.272 3.728 29 O -0.419 6.419 30 H 0.041 0.959 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.150 0.850 39 H 0.171 0.829 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.152 -3.205 24.383 27.889 hybrid contribution -0.634 0.330 -1.299 1.483 sum 12.518 -2.875 23.084 26.416 Atomic orbital electron populations 1.22008 0.96934 1.00371 1.00883 1.20399 0.91929 0.92283 0.79010 0.96973 1.21324 1.33533 1.13960 0.89900 0.91428 1.25858 0.94653 0.95661 1.02194 1.70017 1.36514 1.23641 1.25274 0.85103 0.78357 0.78426 0.77319 1.18706 1.19706 1.19888 1.86481 1.76023 1.43897 1.21600 1.23912 0.73973 0.85670 0.86356 1.90591 1.50029 1.18096 1.85154 1.21587 1.05028 1.00085 0.88556 1.21274 1.02379 0.94255 0.81527 1.45720 1.05073 1.57312 1.19033 1.18366 0.82537 1.01374 0.99826 1.20981 0.93694 0.99879 1.01017 1.21359 0.94096 0.99114 0.98219 1.21424 1.01130 0.94854 0.94560 1.20885 0.88506 1.01497 1.01861 1.18868 0.91074 0.94902 0.93252 1.86282 1.22933 1.41671 1.70968 1.23057 0.84670 0.99049 0.90703 0.81452 1.22319 1.04124 0.97293 0.98895 1.22266 0.86360 0.77552 0.86589 1.90775 1.16396 1.56357 1.78375 0.95903 0.89818 0.93681 0.91900 0.85695 0.87464 0.87365 0.89794 0.84992 0.82862 0.81691 0.82300 0.92317 0.89713 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.69 9.33 71.98 0.67 -7.02 16 2 C 0.22 12.18 2.56 29.85 0.08 12.26 16 3 H 0.01 0.77 7.16 -2.39 -0.02 0.76 16 4 C -0.55 -31.65 8.90 25.60 0.23 -31.42 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 8 Si 0.99 43.03 29.54 68.60 2.03 45.05 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 O -0.36 -18.07 9.86 -51.38 -0.51 -18.58 16 13 C 0.46 19.58 7.93 71.24 0.56 20.15 16 14 O -0.55 -26.20 15.20 21.97 0.33 -25.87 16 15 C -0.11 -3.58 6.14 29.85 0.18 -3.40 16 16 C 0.13 3.65 4.50 86.38 0.39 4.03 16 17 N -0.55 -13.75 2.72 -630.25 -1.71 -15.46 16 18 C 0.07 1.53 6.39 38.14 0.24 1.77 16 19 C -0.14 -2.49 9.36 22.35 0.21 -2.28 16 20 C -0.11 -1.43 10.04 22.29 0.22 -1.21 16 21 C -0.10 -1.05 10.04 22.30 0.22 -0.83 16 22 C -0.11 -1.41 10.00 22.32 0.22 -1.18 16 23 C 0.07 1.20 5.85 22.58 0.13 1.34 16 24 O -0.30 -5.67 10.18 -93.31 -0.95 -6.62 16 25 C 0.08 1.48 3.82 29.88 0.11 1.60 16 26 H 0.17 2.29 8.14 -2.39 -0.02 2.28 16 27 C -0.17 -2.17 9.29 71.98 0.67 -1.50 16 28 C 0.48 12.44 6.91 87.64 0.61 13.05 16 29 O -0.54 -17.76 16.76 -3.05 -0.05 -17.81 16 30 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 4.74 6.07 -2.39 -0.01 4.72 16 32 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.11 2.84 5.92 -2.39 -0.01 2.82 16 37 H 0.08 2.74 7.44 -2.39 -0.02 2.72 16 38 H 0.13 2.47 6.12 -2.91 -0.02 2.45 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.06 0.86 7.81 -2.39 -0.02 0.84 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -73.48 371.05 5.61 -67.87 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.02 Total: 17.46 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.21 Total: 6.70 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.47 Total: -68.20 kcal Atomic # 8 Polarization: -67.71 SS G_CDS: -1.17 Total: -68.89 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -73.48 5.61 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.488 kcal (2) G-P(sol) polarization free energy of solvation -73.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds