Wall clock time and date at job start Tue Mar 31 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47021 * 2 1 4 4 C 1.50698 * 109.47077 * 239.99520 * 2 1 3 5 5 H 1.08001 * 119.99911 * 240.00175 * 4 2 1 6 6 C 1.37872 * 120.00010 * 60.00223 * 4 2 1 7 7 N 1.31516 * 120.00245 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00113 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47053 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46979 * 120.00107 * 8 6 4 11 11 H 1.48499 * 109.46997 * 239.99744 * 8 6 4 12 12 O 1.45205 * 109.46961 * 119.99997 * 2 1 3 13 13 C 1.34231 * 116.99798 * 269.99635 * 12 2 1 14 14 O 1.20827 * 119.99724 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00046 * 179.97438 * 13 12 2 16 16 O 1.42899 * 109.47020 * 180.02562 * 15 13 12 17 17 C 1.35892 * 117.00213 * 179.97438 * 16 15 13 18 18 C 1.38808 * 120.01956 * 359.73252 * 17 16 15 19 19 C 1.38169 * 120.08879 * 179.78946 * 18 17 16 20 20 C 1.38163 * 120.12044 * 0.45805 * 19 18 17 21 21 C 1.38892 * 120.04350 * 359.79024 * 20 19 18 22 22 N 1.39916 * 120.04125 * 179.97438 * 21 20 19 23 23 C 1.46757 * 124.35398 * 353.96912 * 22 21 20 24 24 C 1.54661 * 105.38295 * 162.85379 * 23 22 21 25 25 C 1.54627 * 101.68717 * 25.76523 * 24 23 22 26 26 C 1.34420 * 124.34519 * 174.26580 * 22 21 20 27 27 O 1.21283 * 124.94546 * 0.39151 * 26 22 21 28 28 C 1.38586 * 120.02481 * 179.97438 * 17 16 15 29 29 H 1.09004 * 109.47105 * 60.00691 * 1 2 3 30 30 H 1.08995 * 109.47221 * 300.00124 * 1 2 3 31 31 H 1.09004 * 109.47097 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00158 * 179.97438 * 7 6 4 33 33 H 1.08989 * 109.47173 * 300.00355 * 15 13 12 34 34 H 1.08999 * 109.46558 * 60.00521 * 15 13 12 35 35 H 1.08008 * 119.95873 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.93802 * 180.21244 * 19 18 17 37 37 H 1.08001 * 119.97757 * 179.76905 * 20 19 18 38 38 H 1.08999 * 110.24949 * 281.98049 * 23 22 21 39 39 H 1.08998 * 110.24481 * 43.97917 * 23 22 21 40 40 H 1.09005 * 111.19311 * 267.59354 * 24 23 22 41 41 H 1.09005 * 110.85229 * 143.79495 * 24 23 22 42 42 H 1.08995 * 110.48655 * 216.30982 * 25 24 23 43 43 H 1.09002 * 110.48227 * 93.66715 * 25 24 23 44 44 H 1.08002 * 120.05941 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1199 -4.0079 9 1 3.1473 -2.2866 -3.6036 10 1 1.1677 -1.5869 -4.8164 11 1 3.1472 -0.1861 -4.8160 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9974 1.2518 2.2505 15 6 2.7182 -0.5771 3.5496 16 8 2.8528 0.4186 4.5656 17 6 3.2971 0.0038 5.7810 18 6 3.5920 -1.3361 5.9924 19 6 4.0479 -1.7587 7.2263 20 6 4.2028 -0.8510 8.2563 21 6 3.9044 0.4901 8.0522 22 7 4.0608 1.4091 9.0954 23 6 4.4102 1.0459 10.4738 24 6 4.8957 2.3578 11.1333 25 6 4.1591 3.4239 10.2895 26 6 3.9047 2.7379 8.9653 27 8 3.6040 3.3046 7.9360 28 6 3.4513 0.9172 6.8118 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1610 -3.4845 33 1 2.0087 -1.3367 3.8775 34 1 3.6871 -1.0408 3.3640 35 1 3.4685 -2.0486 5.1901 36 1 4.2799 -2.8011 7.3871 37 1 4.5559 -1.1845 9.2210 38 1 3.5346 0.6598 10.9956 39 1 5.2095 0.3049 10.4774 40 1 5.9765 2.4676 11.0434 41 1 4.5864 2.4048 12.1775 42 1 4.7896 4.3019 10.1494 43 1 3.2172 3.7010 10.7628 44 1 3.2183 1.9594 6.6504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:54 Heat of formation + Delta-G solvation = -119.930291 kcal Electronic energy + Delta-G solvation = -27456.709052 eV Core-core repulsion = 23340.073478 eV Total energy + Delta-G solvation = -4116.635574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42679 -40.17257 -39.24166 -37.58054 -36.79783 -35.63396 -33.33747 -33.29391 -30.95738 -29.79062 -29.18576 -28.32978 -27.90000 -25.33075 -23.62536 -23.37152 -21.98823 -21.40929 -20.21320 -19.59203 -18.46926 -17.40334 -17.11081 -16.84390 -16.47093 -16.39715 -16.17235 -15.81812 -15.54150 -14.93947 -14.62974 -14.41781 -14.33600 -14.13387 -13.88548 -13.61142 -13.34141 -13.18450 -12.78342 -12.76259 -12.24372 -12.14994 -11.92370 -11.79910 -11.63937 -11.42857 -11.33663 -11.15324 -11.06910 -10.84954 -10.38123 -10.37037 -10.29290 -9.90644 -9.66243 -9.55986 -8.92590 -8.53109 -8.50939 -8.14021 -6.19517 -4.26919 1.02557 1.27228 2.24761 2.28587 2.72566 2.88185 3.23556 3.30481 3.35776 3.62886 3.75823 3.85153 3.99030 4.23380 4.32801 4.43852 4.65682 4.81735 4.86055 4.91811 4.94770 5.04788 5.12069 5.13105 5.14429 5.16088 5.23714 5.35596 5.38532 5.54997 5.69023 5.86600 6.04977 6.20376 6.32718 6.61633 6.65056 6.76780 6.87329 6.89275 7.11375 7.32597 7.57912 7.68854 7.70499 7.91311 8.10927 8.57954 8.84502 9.38429 10.87997 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.001991 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.408512 B =14059.358019 C =14695.601117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.914 3.086 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.353 6.353 13 C 0.453 3.547 14 O -0.496 6.496 15 C 0.066 3.934 16 O -0.288 6.288 17 C 0.165 3.835 18 C -0.235 4.235 19 C -0.051 4.051 20 C -0.199 4.199 21 C 0.201 3.799 22 N -0.561 5.561 23 C 0.096 3.904 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.511 3.489 27 O -0.498 6.498 28 C -0.190 4.190 29 H 0.101 0.899 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -3.342 30.741 31.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.141 4.141 7 N -0.526 5.526 8 Si 0.741 3.259 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.269 6.269 13 C 0.294 3.706 14 O -0.384 6.384 15 C -0.010 4.010 16 O -0.200 6.200 17 C 0.118 3.882 18 C -0.254 4.254 19 C -0.070 4.070 20 C -0.220 4.220 21 C 0.107 3.893 22 N -0.285 5.285 23 C -0.026 4.026 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.300 3.700 27 O -0.372 6.372 28 C -0.210 4.210 29 H 0.119 0.881 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.749 -2.328 29.910 30.985 hybrid contribution 0.223 -0.626 -0.846 1.076 sum 7.972 -2.954 29.064 30.282 Atomic orbital electron populations 1.22177 0.97363 1.00214 1.01603 1.20736 0.91533 0.94090 0.77240 0.93339 1.21046 1.32604 1.13544 0.88722 0.91146 1.24907 0.94930 0.95121 0.99117 1.69910 1.35972 1.22521 1.24161 0.86190 0.78614 0.79450 0.81694 1.19459 1.20697 1.20725 1.86453 1.76122 1.43458 1.20915 1.22561 0.76155 0.86158 0.85762 1.90663 1.46945 1.16548 1.84253 1.22013 1.03454 0.90283 0.85248 1.86143 1.80396 1.35594 1.17885 1.18749 0.92509 0.92144 0.84752 1.21325 1.09401 0.94828 0.99870 1.20671 0.95545 0.99159 0.91585 1.20604 1.09471 0.91199 1.00695 1.17318 0.96730 0.88656 0.86613 1.45794 1.66454 1.06769 1.09458 1.22302 1.01510 0.98635 0.80153 1.22660 1.01453 0.92675 1.00119 1.22356 1.03729 0.99752 0.93485 1.21178 0.76157 0.81822 0.90867 1.90716 1.45390 1.68757 1.32344 1.20700 1.07500 1.02550 0.90298 0.88081 0.96381 0.94317 0.92373 0.88064 0.87968 0.84874 0.85177 0.85697 0.89939 0.89368 0.89494 0.88545 0.87376 0.87209 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.33 37.16 0.35 -3.68 16 2 C 0.22 5.91 2.56 -27.89 -0.07 5.84 16 3 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 4 C -0.52 -14.73 8.90 -34.44 -0.31 -15.03 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 O -0.35 -8.45 9.86 -39.26 -0.39 -8.83 16 13 C 0.45 9.90 8.01 36.01 0.29 10.19 16 14 O -0.50 -12.74 15.72 -25.48 -0.40 -13.14 16 15 C 0.07 1.05 5.33 36.01 0.19 1.25 16 16 O -0.29 -5.11 9.67 -39.35 -0.38 -5.49 16 17 C 0.17 2.46 6.68 -39.24 -0.26 2.20 16 18 C -0.23 -2.72 9.04 -39.40 -0.36 -3.07 16 19 C -0.05 -0.48 10.03 -39.63 -0.40 -0.87 16 20 C -0.20 -1.84 9.42 -39.37 -0.37 -2.21 16 21 C 0.20 2.36 6.59 -83.72 -0.55 1.81 16 22 N -0.56 -5.28 3.14 -112.18 -0.35 -5.63 16 23 C 0.10 0.42 6.52 -3.03 -0.02 0.40 16 24 C -0.13 -0.34 7.19 -25.00 -0.18 -0.52 16 25 C -0.15 -0.81 6.86 -26.74 -0.18 -0.99 16 26 C 0.51 5.49 7.92 -10.86 -0.09 5.40 16 27 O -0.50 -7.77 14.81 5.56 0.08 -7.69 16 28 C -0.19 -2.86 9.22 -39.25 -0.36 -3.22 16 29 H 0.10 2.78 6.07 -51.93 -0.32 2.46 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.10 1.30 7.65 -51.94 -0.40 0.90 16 34 H 0.10 1.34 7.67 -51.93 -0.40 0.94 16 35 H 0.13 1.30 6.29 -52.48 -0.33 0.97 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.77 6.73 -52.49 -0.35 0.42 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.27 7.22 -51.93 -0.38 -0.11 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.16 2.87 5.25 -52.49 -0.28 2.59 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -36.35 369.48 -8.42 -44.77 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.74 Total: 0.07 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.41 Total: -0.90 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.28 Total: -30.52 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.09 Total: -35.15 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.35 -8.42 -44.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.162 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds