Wall clock time and date at job start Tue Mar 31 2020 18:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47021 * 2 1 4 4 C 1.50698 * 109.47077 * 239.99520 * 2 1 3 5 5 H 1.08001 * 119.99911 * 240.00175 * 4 2 1 6 6 C 1.37872 * 120.00010 * 60.00223 * 4 2 1 7 7 N 1.31516 * 120.00245 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00113 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47053 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46979 * 120.00107 * 8 6 4 11 11 H 1.48499 * 109.46997 * 239.99744 * 8 6 4 12 12 O 1.45205 * 109.46961 * 119.99997 * 2 1 3 13 13 C 1.34231 * 116.99798 * 269.99635 * 12 2 1 14 14 O 1.20827 * 119.99724 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00046 * 179.97438 * 13 12 2 16 16 O 1.42899 * 109.47020 * 180.02562 * 15 13 12 17 17 C 1.35892 * 117.00213 * 179.97438 * 16 15 13 18 18 C 1.38808 * 120.01956 * 359.73252 * 17 16 15 19 19 C 1.38169 * 120.08879 * 179.78946 * 18 17 16 20 20 C 1.38163 * 120.12044 * 0.45805 * 19 18 17 21 21 C 1.38892 * 120.04350 * 359.79024 * 20 19 18 22 22 N 1.39916 * 120.04125 * 179.97438 * 21 20 19 23 23 C 1.46757 * 124.35398 * 353.96912 * 22 21 20 24 24 C 1.54661 * 105.38295 * 162.85379 * 23 22 21 25 25 C 1.54627 * 101.68717 * 25.76523 * 24 23 22 26 26 C 1.34420 * 124.34519 * 174.26580 * 22 21 20 27 27 O 1.21283 * 124.94546 * 0.39151 * 26 22 21 28 28 C 1.38586 * 120.02481 * 179.97438 * 17 16 15 29 29 H 1.09004 * 109.47105 * 60.00691 * 1 2 3 30 30 H 1.08995 * 109.47221 * 300.00124 * 1 2 3 31 31 H 1.09004 * 109.47097 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00158 * 179.97438 * 7 6 4 33 33 H 1.08989 * 109.47173 * 300.00355 * 15 13 12 34 34 H 1.08999 * 109.46558 * 60.00521 * 15 13 12 35 35 H 1.08008 * 119.95873 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.93802 * 180.21244 * 19 18 17 37 37 H 1.08001 * 119.97757 * 179.76905 * 20 19 18 38 38 H 1.08999 * 110.24949 * 281.98049 * 23 22 21 39 39 H 1.08998 * 110.24481 * 43.97917 * 23 22 21 40 40 H 1.09005 * 111.19311 * 267.59354 * 24 23 22 41 41 H 1.09005 * 110.85229 * 143.79495 * 24 23 22 42 42 H 1.08995 * 110.48655 * 216.30982 * 25 24 23 43 43 H 1.09002 * 110.48227 * 93.66715 * 25 24 23 44 44 H 1.08002 * 120.05941 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1199 -4.0079 9 1 3.1473 -2.2866 -3.6036 10 1 1.1677 -1.5869 -4.8164 11 1 3.1472 -0.1861 -4.8160 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9974 1.2518 2.2505 15 6 2.7182 -0.5771 3.5496 16 8 2.8528 0.4186 4.5656 17 6 3.2971 0.0038 5.7810 18 6 3.5920 -1.3361 5.9924 19 6 4.0479 -1.7587 7.2263 20 6 4.2028 -0.8510 8.2563 21 6 3.9044 0.4901 8.0522 22 7 4.0608 1.4091 9.0954 23 6 4.4102 1.0459 10.4738 24 6 4.8957 2.3578 11.1333 25 6 4.1591 3.4239 10.2895 26 6 3.9047 2.7379 8.9653 27 8 3.6040 3.3046 7.9360 28 6 3.4513 0.9172 6.8118 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1610 -3.4845 33 1 2.0087 -1.3367 3.8775 34 1 3.6871 -1.0408 3.3640 35 1 3.4685 -2.0486 5.1901 36 1 4.2799 -2.8011 7.3871 37 1 4.5559 -1.1845 9.2210 38 1 3.5346 0.6598 10.9956 39 1 5.2095 0.3049 10.4774 40 1 5.9765 2.4676 11.0434 41 1 4.5864 2.4048 12.1775 42 1 4.7896 4.3019 10.1494 43 1 3.2172 3.7010 10.7628 44 1 3.2183 1.9594 6.6504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:53 Heat of formation + Delta-G solvation = -143.057921 kcal Electronic energy + Delta-G solvation = -27457.711941 eV Core-core repulsion = 23340.073478 eV Total energy + Delta-G solvation = -4117.638464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.18196 -41.61620 -40.66196 -38.63177 -37.72419 -37.41582 -35.39959 -33.95210 -32.22906 -31.56195 -29.93744 -29.54466 -28.55724 -27.49808 -24.60930 -24.11543 -23.57052 -22.11756 -21.72645 -20.82467 -19.44114 -19.00972 -18.49976 -17.91407 -17.76599 -17.54871 -17.40149 -17.14145 -16.65595 -16.39431 -16.22464 -15.74695 -15.05085 -14.91827 -14.75201 -14.56512 -14.39150 -14.32683 -14.21987 -13.88699 -13.60018 -13.47933 -13.23409 -13.05904 -12.84987 -12.78310 -12.44950 -12.43019 -12.39253 -12.27239 -12.15672 -11.90392 -11.69269 -11.45885 -11.06988 -11.04748 -10.74586 -10.64450 -9.51100 -8.96003 -8.31753 -6.49603 0.15115 0.37423 1.11902 1.16214 1.42413 1.42934 1.47502 1.57641 1.77632 2.33405 2.61432 2.76651 2.99181 3.27763 3.54325 3.60888 3.87050 3.94981 3.97393 3.99531 4.09960 4.14095 4.17533 4.26884 4.46714 4.48473 4.59413 4.62116 4.72984 4.75993 4.78694 4.85870 5.06226 5.08066 5.11917 5.18623 5.25396 5.37466 5.44054 5.45370 5.55541 5.81064 5.84689 5.98224 6.04023 6.28426 6.55537 6.81791 6.92127 7.21738 8.76581 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.001991 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.408512 B =14059.358019 C =14695.601117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.216 3.784 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.989 3.011 9 H -0.259 1.259 10 H -0.271 1.271 11 H -0.278 1.278 12 O -0.350 6.350 13 C 0.447 3.553 14 O -0.545 6.545 15 C 0.080 3.920 16 O -0.329 6.329 17 C 0.135 3.865 18 C -0.234 4.234 19 C -0.041 4.041 20 C -0.182 4.182 21 C 0.191 3.809 22 N -0.563 5.563 23 C 0.086 3.914 24 C -0.116 4.116 25 C -0.147 4.147 26 C 0.490 3.510 27 O -0.566 6.566 28 C -0.229 4.229 29 H 0.082 0.918 30 H 0.020 0.980 31 H 0.052 0.948 32 H 0.271 0.729 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 -7.085 33.613 35.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.163 3.837 3 H 0.022 0.978 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.812 3.188 9 H -0.183 1.183 10 H -0.196 1.196 11 H -0.203 1.203 12 O -0.267 6.267 13 C 0.290 3.710 14 O -0.435 6.435 15 C 0.005 3.995 16 O -0.243 6.243 17 C 0.090 3.910 18 C -0.253 4.253 19 C -0.059 4.059 20 C -0.202 4.202 21 C 0.096 3.904 22 N -0.286 5.286 23 C -0.034 4.034 24 C -0.154 4.154 25 C -0.186 4.186 26 C 0.281 3.719 27 O -0.444 6.444 28 C -0.250 4.250 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.191 0.809 37 H 0.185 0.815 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.148 0.852 42 H 0.130 0.870 43 H 0.143 0.857 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.450 -6.108 32.863 34.736 hybrid contribution -0.275 0.578 -1.577 1.702 sum 9.174 -5.530 31.287 33.070 Atomic orbital electron populations 1.22004 0.96503 1.00791 1.00816 1.20470 0.92263 0.92143 0.78835 0.97758 1.21321 1.33537 1.14032 0.89504 0.90799 1.25931 0.94699 0.95703 1.02408 1.70039 1.36595 1.23760 1.25288 0.85042 0.78329 0.78373 0.77077 1.18304 1.19585 1.20318 1.86434 1.76257 1.43114 1.20882 1.23830 0.74637 0.85762 0.86725 1.90642 1.49066 1.18855 1.84968 1.22110 1.05764 0.89566 0.82088 1.86065 1.81668 1.37205 1.19400 1.18976 0.94628 0.93909 0.83494 1.21607 1.08832 0.93172 1.01737 1.21227 0.93302 1.01164 0.90234 1.21093 1.07153 0.89508 1.02477 1.17569 0.96326 0.90431 0.86072 1.46151 1.65319 1.06174 1.10912 1.22767 1.03139 1.00158 0.77339 1.22732 1.01542 0.90082 1.01009 1.22437 1.05057 1.00354 0.90774 1.22332 0.74900 0.82746 0.91881 1.90686 1.48335 1.70204 1.35217 1.20650 1.10520 1.01092 0.92779 0.89920 0.96073 0.92857 0.91934 0.84248 0.84567 0.82733 0.80865 0.81504 0.88059 0.87167 0.88698 0.85190 0.86977 0.85689 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.66 9.33 71.98 0.67 -6.99 16 2 C 0.22 12.30 2.56 29.85 0.08 12.38 16 3 H 0.00 0.30 7.16 -2.39 -0.02 0.28 16 4 C -0.55 -31.43 8.90 25.60 0.23 -31.20 16 5 H 0.07 4.09 7.81 -2.91 -0.02 4.07 16 6 C 0.01 0.68 5.30 84.65 0.45 1.12 16 7 N -0.92 -54.04 11.32 21.45 0.24 -53.79 16 8 Si 0.99 43.27 29.54 68.60 2.03 45.30 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 O -0.35 -17.20 9.86 -51.43 -0.51 -17.71 16 13 C 0.45 20.32 8.01 71.24 0.57 20.89 16 14 O -0.54 -30.00 15.72 28.39 0.45 -29.55 16 15 C 0.08 2.53 5.33 71.24 0.38 2.91 16 16 O -0.33 -12.38 9.67 -73.26 -0.71 -13.09 16 17 C 0.14 4.17 6.68 22.49 0.15 4.33 16 18 C -0.23 -4.89 9.04 22.39 0.20 -4.69 16 19 C -0.04 -0.59 10.03 22.24 0.22 -0.37 16 20 C -0.18 -2.70 9.42 22.41 0.21 -2.49 16 21 C 0.19 4.42 6.59 38.14 0.25 4.67 16 22 N -0.56 -10.24 3.14 -627.43 -1.97 -12.21 16 23 C 0.09 0.44 6.52 86.90 0.57 1.01 16 24 C -0.12 -0.19 7.19 31.71 0.23 0.04 16 25 C -0.15 -1.40 6.86 30.59 0.21 -1.19 16 26 C 0.49 11.21 7.92 87.90 0.70 11.90 16 27 O -0.57 -20.05 14.81 -3.04 -0.04 -20.09 16 28 C -0.23 -7.50 9.22 22.49 0.21 -7.29 16 29 H 0.08 4.72 6.07 -2.39 -0.01 4.71 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.14 3.31 7.65 -2.39 -0.02 3.29 16 34 H 0.14 3.35 7.67 -2.39 -0.02 3.33 16 35 H 0.16 2.45 6.29 -2.91 -0.02 2.43 16 36 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 37 H 0.17 1.05 6.73 -2.91 -0.02 1.03 16 38 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.11 0.12 7.22 -2.39 -0.02 0.10 16 40 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 41 H 0.13 -0.56 8.14 -2.38 -0.02 -0.58 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.12 4.98 5.25 -2.91 -0.02 4.97 16 Total: -1.00 -89.57 369.48 5.84 -83.73 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.03 Total: 12.40 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.32 Total: 5.02 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -1.73 Total: -66.00 kcal Atomic # 8 Polarization: -79.63 SS G_CDS: -0.81 Total: -80.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -89.57 5.84 -83.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.324 kcal (2) G-P(sol) polarization free energy of solvation -89.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds