Wall clock time and date at job start Tue Mar 31 2020 18:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35972 * 116.99999 * 2 1 4 4 C 1.38553 * 120.08363 * 359.97175 * 3 2 1 5 5 C 1.38241 * 120.01781 * 180.02562 * 4 3 2 6 6 C 1.38277 * 120.17824 * 0.02562 * 5 4 3 7 7 C 1.38207 * 120.16461 * 359.74680 * 6 5 4 8 8 C 1.38721 * 119.98245 * 0.50556 * 7 6 5 9 9 N 1.40112 * 120.09156 * 179.77448 * 8 7 6 10 10 C 1.46764 * 124.35277 * 89.72063 * 9 8 7 11 11 C 1.54484 * 105.47579 * 162.96584 * 10 9 8 12 12 H 1.08999 * 110.96872 * 267.26185 * 11 10 9 13 13 C 1.50696 * 110.97330 * 143.53085 * 11 10 9 14 14 O 1.20833 * 119.99595 * 0.02562 * 13 11 10 15 15 O 1.34224 * 120.00302 * 179.97438 * 13 11 10 16 16 C 1.45206 * 117.00077 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.46893 * 30.00273 * 16 15 13 18 18 C 1.52998 * 109.47200 * 269.99945 * 16 15 13 19 19 C 1.50701 * 109.46873 * 149.99983 * 16 15 13 20 20 H 1.07995 * 120.00385 * 0.02562 * 19 16 15 21 21 C 1.37882 * 119.99927 * 180.02562 * 19 16 15 22 22 N 1.31512 * 119.99626 * 0.02562 * 21 19 16 23 23 Si 1.86793 * 120.00223 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47319 * 89.99604 * 23 21 19 25 25 H 1.48499 * 109.47414 * 210.00003 * 23 21 19 26 26 H 1.48503 * 109.47075 * 330.00250 * 23 21 19 27 27 C 1.54635 * 101.76468 * 25.41614 * 11 10 9 28 28 C 1.34421 * 124.34780 * 269.69982 * 9 8 7 29 29 O 1.21290 * 124.94378 * 0.42421 * 28 9 8 30 30 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47764 * 300.00593 * 1 2 3 32 32 H 1.09004 * 109.46692 * 60.00283 * 1 2 3 33 33 H 1.08000 * 119.99071 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.91253 * 179.97438 * 5 4 3 35 35 H 1.08006 * 119.92137 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.00842 * 180.25296 * 7 6 5 37 37 H 1.08994 * 110.24595 * 43.96574 * 10 9 8 38 38 H 1.09008 * 110.24619 * 281.96279 * 10 9 8 39 39 H 1.08997 * 109.46785 * 59.99955 * 18 16 15 40 40 H 1.09002 * 109.47171 * 179.97438 * 18 16 15 41 41 H 1.09004 * 109.47223 * 300.00437 * 18 16 15 42 42 H 0.97006 * 119.99899 * 180.02562 * 22 21 19 43 43 H 1.08994 * 110.48947 * 93.88006 * 27 11 10 44 44 H 1.08994 * 110.48534 * 216.52936 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 -0.0006 5 6 1.9224 3.6056 -0.0011 6 6 3.3031 3.6807 -0.0016 7 6 4.0614 2.5253 0.0037 8 6 3.4373 1.2864 -0.0010 9 7 4.2039 0.1136 -0.0004 10 6 4.6573 -0.5787 1.2116 11 6 5.0624 -1.9961 0.7496 12 1 4.2286 -2.6913 0.8472 13 6 6.2644 -2.4893 1.5129 14 8 6.7722 -1.7903 2.3576 15 8 6.7705 -3.7055 1.2552 16 6 7.9287 -4.1152 2.0292 17 1 7.8939 -3.6448 3.0118 18 6 9.2052 -3.6858 1.3031 19 6 7.9216 -5.6137 2.1891 20 1 7.1265 -6.1996 1.7523 21 6 8.9303 -6.2367 2.8930 22 7 9.8984 -5.5231 3.4252 23 14 8.9220 -8.0941 3.0906 24 1 9.6631 -8.7152 1.9636 25 1 9.5755 -8.4584 4.3733 26 1 7.5206 -8.5854 3.0919 27 6 5.4118 -1.7552 -0.7374 28 6 4.6181 -0.5223 -1.1099 29 8 4.3889 -0.1603 -2.2446 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2148 2.3195 -0.0006 34 1 1.3338 4.5112 -0.0020 35 1 3.7902 4.6447 -0.0016 36 1 5.1397 2.5869 0.0075 37 1 3.8473 -0.6361 1.9386 38 1 5.5157 -0.0627 1.6420 39 1 9.2102 -2.6020 1.1875 40 1 10.0746 -3.9929 1.8844 41 1 9.2399 -4.1562 0.3204 42 1 10.6083 -5.9614 3.9202 43 1 6.4798 -1.5707 -0.8533 44 1 5.1025 -2.6058 -1.3446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:41 Heat of formation + Delta-G solvation = -122.057758 kcal Electronic energy + Delta-G solvation = -28511.564539 eV Core-core repulsion = 24394.836711 eV Total energy + Delta-G solvation = -4116.727828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24999 -40.07593 -39.20922 -37.62807 -36.53306 -35.64359 -33.49672 -33.14795 -30.54258 -29.89070 -29.28757 -27.75526 -27.52607 -25.37250 -24.37248 -22.86651 -22.44786 -21.28258 -20.03564 -19.45952 -18.39604 -17.58595 -17.34386 -16.68534 -16.54490 -16.11170 -15.87792 -15.38371 -15.24522 -14.99514 -14.87040 -14.65578 -14.30762 -13.97808 -13.72985 -13.49158 -13.08169 -12.93907 -12.86456 -12.45529 -12.24082 -11.99364 -11.92601 -11.63776 -11.45161 -11.43324 -11.32344 -11.19220 -11.10306 -10.86870 -10.43587 -10.31960 -10.11987 -9.71030 -9.59981 -9.18784 -8.98626 -8.96389 -8.53159 -8.47377 -6.22173 -4.29260 0.89903 1.11092 2.49737 2.70171 2.81334 2.98057 3.22931 3.27688 3.30569 3.35180 3.52029 4.23472 4.29749 4.47386 4.49734 4.56722 4.77889 4.82665 4.83597 4.92056 4.99307 5.06539 5.11447 5.17789 5.22784 5.38729 5.45788 5.55348 5.62500 5.79151 5.88320 5.90980 6.03353 6.15911 6.31846 6.56982 6.58310 6.83659 6.85023 6.90951 7.08559 7.11386 7.54725 7.67236 7.86688 8.08546 8.12057 8.52776 8.81866 9.36379 10.85227 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002490 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.741099 B =11240.754855 C =11600.933788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.137 3.863 4 C -0.206 4.206 5 C -0.075 4.075 6 C -0.150 4.150 7 C -0.069 4.069 8 C 0.114 3.886 9 N -0.571 5.571 10 C 0.120 3.880 11 C -0.097 4.097 12 H 0.126 0.874 13 C 0.465 3.535 14 O -0.515 6.515 15 O -0.349 6.349 16 C 0.215 3.785 17 H 0.048 0.952 18 C -0.156 4.156 19 C -0.522 4.522 20 H 0.070 0.930 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.912 3.088 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.271 1.271 27 C -0.137 4.137 28 C 0.529 3.471 29 O -0.522 6.522 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.016 0.984 40 H 0.100 0.900 41 H 0.038 0.962 42 H 0.267 0.733 43 H 0.113 0.887 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.335 15.552 -5.557 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.089 3.911 4 C -0.225 4.225 5 C -0.093 4.093 6 C -0.169 4.169 7 C -0.089 4.089 8 C 0.024 3.976 9 N -0.302 5.302 10 C -0.002 4.002 11 C -0.116 4.116 12 H 0.144 0.856 13 C 0.307 3.693 14 O -0.405 6.405 15 O -0.265 6.265 16 C 0.163 3.837 17 H 0.066 0.934 18 C -0.213 4.213 19 C -0.560 4.560 20 H 0.088 0.912 21 C -0.140 4.140 22 N -0.527 5.527 23 Si 0.739 3.261 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.177 4.177 28 C 0.318 3.682 29 O -0.397 6.397 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.035 0.965 40 H 0.118 0.882 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.131 0.869 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.036 15.707 -5.791 23.885 hybrid contribution -0.109 -0.787 0.348 0.867 sum -17.145 14.920 -5.443 23.370 Atomic orbital electron populations 1.23102 0.78277 1.04247 1.01253 1.86168 1.21362 1.26256 1.88108 1.19328 0.91370 0.84914 0.95461 1.21161 1.00117 0.91927 1.09301 1.21012 0.94684 0.97005 0.96613 1.20977 0.93768 0.98148 1.04022 1.21251 1.00643 0.90593 0.96376 1.16686 0.86274 0.86021 1.08663 1.45433 1.52501 1.24298 1.07949 1.22107 1.01297 0.90472 0.86293 1.21827 0.97222 0.97634 0.94957 0.85615 1.22667 0.83878 0.81555 0.81179 1.90618 1.60493 1.56825 1.32560 1.86492 1.47360 1.30830 1.61836 1.20697 0.77551 0.95257 0.90185 0.93431 1.22173 1.01974 0.96603 1.00580 1.21019 1.10166 0.89906 1.34903 0.91228 1.24889 0.94881 0.99341 0.94862 1.69895 1.12187 1.35697 1.34880 0.86263 0.78456 0.83734 0.77625 1.20327 1.20978 1.19608 1.22258 1.02550 0.97781 0.95072 1.20942 0.78537 0.84675 0.84041 1.90718 1.58100 1.70036 1.20870 0.88013 0.92552 0.92611 0.84996 0.85404 0.85221 0.84822 0.89419 0.88573 0.96497 0.88188 0.94306 0.92352 0.86877 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.58 10.24 -19.65 -0.20 -3.78 16 3 C 0.14 1.62 6.70 -39.07 -0.26 1.35 16 4 C -0.21 -1.88 9.04 -39.46 -0.36 -2.23 16 5 C -0.08 -0.61 10.04 -39.57 -0.40 -1.01 16 6 C -0.15 -1.33 10.04 -39.58 -0.40 -1.73 16 7 C -0.07 -0.77 9.96 -39.41 -0.39 -1.16 16 8 C 0.11 1.48 5.40 -83.50 -0.45 1.03 16 9 N -0.57 -7.83 2.70 -112.12 -0.30 -8.13 16 10 C 0.12 1.56 6.65 -3.12 -0.02 1.54 16 11 C -0.10 -1.35 3.66 -90.14 -0.33 -1.68 16 12 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 13 C 0.47 8.87 7.16 36.00 0.26 9.12 16 14 O -0.51 -11.09 14.72 -18.76 -0.28 -11.37 16 15 O -0.35 -7.80 9.86 -39.24 -0.39 -8.18 16 16 C 0.22 5.57 2.56 -27.88 -0.07 5.49 16 17 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 18 C -0.16 -3.82 9.33 37.16 0.35 -3.47 16 19 C -0.52 -14.26 8.90 -34.44 -0.31 -14.57 16 20 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 23 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 C -0.14 -1.84 6.41 -26.73 -0.17 -2.02 16 28 C 0.53 8.06 7.99 -10.86 -0.09 7.98 16 29 O -0.52 -9.61 17.71 5.55 0.10 -9.51 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 33 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.33 6.96 -51.92 -0.36 0.97 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 2.64 6.07 -51.93 -0.32 2.33 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.11 1.54 7.89 -51.93 -0.41 1.13 16 44 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -33.48 375.20 -7.48 -40.96 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.93 Total: 1.40 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.74 Total: 1.42 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.33 Total: -32.28 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.77 Total: -32.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.48 -7.48 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.095 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds