Wall clock time and date at job start Tue Mar 31 2020 18:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35972 * 116.99999 * 2 1 4 4 C 1.38553 * 120.08363 * 359.97175 * 3 2 1 5 5 C 1.38241 * 120.01781 * 180.02562 * 4 3 2 6 6 C 1.38277 * 120.17824 * 0.02562 * 5 4 3 7 7 C 1.38207 * 120.16461 * 359.74680 * 6 5 4 8 8 C 1.38721 * 119.98245 * 0.50556 * 7 6 5 9 9 N 1.40112 * 120.09156 * 179.77448 * 8 7 6 10 10 C 1.46764 * 124.35277 * 89.72063 * 9 8 7 11 11 C 1.54484 * 105.47579 * 162.96584 * 10 9 8 12 12 H 1.08999 * 110.96872 * 267.26185 * 11 10 9 13 13 C 1.50696 * 110.97330 * 143.53085 * 11 10 9 14 14 O 1.20833 * 119.99595 * 0.02562 * 13 11 10 15 15 O 1.34224 * 120.00302 * 179.97438 * 13 11 10 16 16 C 1.45206 * 117.00077 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.46893 * 30.00273 * 16 15 13 18 18 C 1.52998 * 109.47200 * 269.99945 * 16 15 13 19 19 C 1.50701 * 109.46873 * 149.99983 * 16 15 13 20 20 H 1.07995 * 120.00385 * 0.02562 * 19 16 15 21 21 C 1.37882 * 119.99927 * 180.02562 * 19 16 15 22 22 N 1.31512 * 119.99626 * 0.02562 * 21 19 16 23 23 Si 1.86793 * 120.00223 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47319 * 89.99604 * 23 21 19 25 25 H 1.48499 * 109.47414 * 210.00003 * 23 21 19 26 26 H 1.48503 * 109.47075 * 330.00250 * 23 21 19 27 27 C 1.54635 * 101.76468 * 25.41614 * 11 10 9 28 28 C 1.34421 * 124.34780 * 269.69982 * 9 8 7 29 29 O 1.21290 * 124.94378 * 0.42421 * 28 9 8 30 30 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47764 * 300.00593 * 1 2 3 32 32 H 1.09004 * 109.46692 * 60.00283 * 1 2 3 33 33 H 1.08000 * 119.99071 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.91253 * 179.97438 * 5 4 3 35 35 H 1.08006 * 119.92137 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.00842 * 180.25296 * 7 6 5 37 37 H 1.08994 * 110.24595 * 43.96574 * 10 9 8 38 38 H 1.09008 * 110.24619 * 281.96279 * 10 9 8 39 39 H 1.08997 * 109.46785 * 59.99955 * 18 16 15 40 40 H 1.09002 * 109.47171 * 179.97438 * 18 16 15 41 41 H 1.09004 * 109.47223 * 300.00437 * 18 16 15 42 42 H 0.97006 * 119.99899 * 180.02562 * 22 21 19 43 43 H 1.08994 * 110.48947 * 93.88006 * 27 11 10 44 44 H 1.08994 * 110.48534 * 216.52936 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 -0.0006 5 6 1.9224 3.6056 -0.0011 6 6 3.3031 3.6807 -0.0016 7 6 4.0614 2.5253 0.0037 8 6 3.4373 1.2864 -0.0010 9 7 4.2039 0.1136 -0.0004 10 6 4.6573 -0.5787 1.2116 11 6 5.0624 -1.9961 0.7496 12 1 4.2286 -2.6913 0.8472 13 6 6.2644 -2.4893 1.5129 14 8 6.7722 -1.7903 2.3576 15 8 6.7705 -3.7055 1.2552 16 6 7.9287 -4.1152 2.0292 17 1 7.8939 -3.6448 3.0118 18 6 9.2052 -3.6858 1.3031 19 6 7.9216 -5.6137 2.1891 20 1 7.1265 -6.1996 1.7523 21 6 8.9303 -6.2367 2.8930 22 7 9.8984 -5.5231 3.4252 23 14 8.9220 -8.0941 3.0906 24 1 9.6631 -8.7152 1.9636 25 1 9.5755 -8.4584 4.3733 26 1 7.5206 -8.5854 3.0919 27 6 5.4118 -1.7552 -0.7374 28 6 4.6181 -0.5223 -1.1099 29 8 4.3889 -0.1603 -2.2446 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2148 2.3195 -0.0006 34 1 1.3338 4.5112 -0.0020 35 1 3.7902 4.6447 -0.0016 36 1 5.1397 2.5869 0.0075 37 1 3.8473 -0.6361 1.9386 38 1 5.5157 -0.0627 1.6420 39 1 9.2102 -2.6020 1.1875 40 1 10.0746 -3.9929 1.8844 41 1 9.2399 -4.1562 0.3204 42 1 10.6083 -5.9614 3.9202 43 1 6.4798 -1.5707 -0.8533 44 1 5.1025 -2.6058 -1.3446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:40 Heat of formation + Delta-G solvation = -141.305657 kcal Electronic energy + Delta-G solvation = -28512.399191 eV Core-core repulsion = 24394.836711 eV Total energy + Delta-G solvation = -4117.562480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34869 -41.28214 -40.46099 -38.38691 -37.98261 -37.19031 -35.34090 -34.34160 -31.71623 -31.24785 -30.35441 -28.92220 -28.13161 -27.43819 -25.67977 -23.85325 -23.17021 -22.99524 -21.22169 -20.89241 -19.33428 -18.93499 -18.64372 -18.29299 -17.75025 -17.21604 -16.96226 -16.71162 -16.48395 -16.30114 -16.06223 -15.79121 -15.37444 -14.91199 -14.83030 -14.77091 -14.63978 -14.17619 -13.99436 -13.78034 -13.58215 -13.22348 -13.07079 -12.96508 -12.78249 -12.73401 -12.64050 -12.51099 -12.37688 -12.15292 -12.11357 -12.04988 -11.59740 -11.49526 -11.11079 -10.98122 -10.57970 -10.07454 -9.96414 -9.23092 -8.27281 -6.43500 0.13411 0.37393 1.20810 1.33774 1.43849 1.45725 1.55575 1.63935 1.99878 2.30810 2.41281 2.64225 3.03848 3.06823 3.31513 3.68427 3.75717 3.84363 3.92676 4.09628 4.19745 4.31621 4.32693 4.37473 4.43445 4.45389 4.54021 4.57015 4.68112 4.71373 4.71990 4.77408 4.80479 4.86029 5.17313 5.21531 5.27664 5.44784 5.50774 5.52196 5.64991 5.75014 5.83849 5.92767 6.08345 6.36065 6.60765 6.91189 6.99189 7.27983 8.80228 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002490 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.741099 B =11240.754855 C =11600.933788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.120 3.880 4 C -0.205 4.205 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.086 4.086 8 C 0.072 3.928 9 N -0.562 5.562 10 C 0.125 3.875 11 C -0.081 4.081 12 H 0.153 0.847 13 C 0.465 3.535 14 O -0.541 6.541 15 O -0.354 6.354 16 C 0.218 3.782 17 H 0.012 0.988 18 C -0.144 4.144 19 C -0.547 4.547 20 H 0.069 0.931 21 C 0.016 3.984 22 N -0.917 5.917 23 Si 0.981 3.019 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.264 1.264 27 C -0.131 4.131 28 C 0.527 3.473 29 O -0.560 6.560 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.025 0.975 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.270 0.730 43 H 0.111 0.889 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.384 15.915 -5.817 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.073 3.927 4 C -0.224 4.224 5 C -0.086 4.086 6 C -0.169 4.169 7 C -0.105 4.105 8 C -0.018 4.018 9 N -0.291 5.291 10 C 0.004 3.996 11 C -0.101 4.101 12 H 0.171 0.829 13 C 0.309 3.691 14 O -0.432 6.432 15 O -0.270 6.270 16 C 0.165 3.835 17 H 0.030 0.970 18 C -0.202 4.202 19 C -0.584 4.584 20 H 0.088 0.912 21 C -0.183 4.183 22 N -0.555 5.555 23 Si 0.804 3.196 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.189 1.189 27 C -0.171 4.171 28 C 0.317 3.683 29 O -0.438 6.438 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.129 0.871 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.109 16.096 -6.035 25.703 hybrid contribution 0.448 -0.750 0.465 0.989 sum -18.661 15.346 -5.570 24.794 Atomic orbital electron populations 1.23367 0.76227 1.05518 1.02477 1.86115 1.23616 1.26646 1.88254 1.19511 0.91186 0.85934 0.96066 1.21526 1.01401 0.91367 1.08132 1.21475 0.94616 0.98009 0.94460 1.21325 0.94365 0.98328 1.02874 1.21395 1.00886 0.91052 0.97191 1.17092 0.87192 0.86043 1.11462 1.45409 1.51840 1.24461 1.07385 1.22063 1.01485 0.89595 0.86472 1.21830 0.95314 0.98539 0.94388 0.82927 1.23538 0.84479 0.80150 0.80930 1.90610 1.61534 1.57144 1.33933 1.86476 1.46476 1.32677 1.61387 1.20376 0.79224 0.94751 0.89165 0.97013 1.22001 1.00669 0.97169 1.00346 1.21309 1.10673 0.90715 1.35730 0.91245 1.25800 0.94234 1.04181 0.94119 1.70015 1.12674 1.37677 1.35116 0.85207 0.78790 0.77756 0.77825 1.19391 1.20472 1.18862 1.22263 1.02265 0.97873 0.94703 1.21120 0.78363 0.84999 0.83860 1.90687 1.59762 1.71137 1.22242 0.86879 0.90894 0.91698 0.82400 0.81872 0.82736 0.85188 0.87801 0.89632 0.95558 0.90188 0.93479 0.92046 0.87106 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.44 10.24 -93.24 -0.95 -8.40 16 3 C 0.12 2.72 6.70 22.60 0.15 2.87 16 4 C -0.21 -3.25 9.04 22.35 0.20 -3.05 16 5 C -0.07 -0.89 10.04 22.28 0.22 -0.67 16 6 C -0.15 -2.37 10.04 22.27 0.22 -2.15 16 7 C -0.09 -1.89 9.96 22.38 0.22 -1.67 16 8 C 0.07 1.86 5.40 38.19 0.21 2.06 16 9 N -0.56 -15.44 2.70 -627.23 -1.69 -17.13 16 10 C 0.13 3.23 6.65 86.83 0.58 3.81 16 11 C -0.08 -2.21 3.66 -10.48 -0.04 -2.25 16 12 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 13 C 0.47 17.84 7.16 71.23 0.51 18.35 16 14 O -0.54 -23.86 14.72 21.94 0.32 -23.54 16 15 O -0.35 -15.93 9.86 -51.35 -0.51 -16.43 16 16 C 0.22 11.52 2.56 29.85 0.08 11.60 16 17 H 0.01 0.71 7.16 -2.39 -0.02 0.69 16 18 C -0.14 -7.20 9.33 71.98 0.67 -6.53 16 19 C -0.55 -30.14 8.90 25.60 0.23 -29.92 16 20 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 21 C 0.02 0.89 5.30 84.66 0.45 1.33 16 22 N -0.92 -51.75 11.32 21.45 0.24 -51.51 16 23 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 27 C -0.13 -3.48 6.41 30.59 0.20 -3.29 16 28 C 0.53 16.15 7.99 87.90 0.70 16.86 16 29 O -0.56 -20.98 17.71 -3.06 -0.05 -21.03 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 32 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 33 H 0.16 1.55 6.30 -2.91 -0.02 1.54 16 34 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.09 2.42 6.96 -2.38 -0.02 2.40 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 4.33 6.07 -2.39 -0.01 4.31 16 41 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 43 H 0.11 3.02 7.89 -2.39 -0.02 3.00 16 44 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -74.03 375.20 6.12 -67.91 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.02 Total: 17.31 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.71 Total: 8.70 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -1.45 Total: -68.63 kcal Atomic # 8 Polarization: -68.21 SS G_CDS: -1.19 Total: -69.40 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.03 6.12 -67.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.394 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds