Wall clock time and date at job start Tue Mar 31 2020 18:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35978 * 117.00092 * 2 1 4 4 C 1.38553 * 120.08192 * 0.23767 * 3 2 1 5 5 C 1.38250 * 120.01315 * 180.29638 * 4 3 2 6 6 C 1.38276 * 120.17733 * 359.71943 * 5 4 3 7 7 C 1.38198 * 120.16515 * 0.02562 * 6 5 4 8 8 C 1.38715 * 119.98530 * 359.97438 * 7 6 5 9 9 N 1.40123 * 120.08974 * 180.02562 * 8 7 6 10 10 C 1.46764 * 124.35227 * 90.00272 * 9 8 7 11 11 C 1.54475 * 105.47352 * 197.03587 * 10 9 8 12 12 H 1.09003 * 110.96723 * 92.74111 * 11 10 9 13 13 C 1.50706 * 110.97096 * 216.46207 * 11 10 9 14 14 O 1.20822 * 119.99559 * 356.91662 * 13 11 10 15 15 O 1.34230 * 120.00012 * 176.91400 * 13 11 10 16 16 C 1.45197 * 116.99422 * 180.02562 * 15 13 11 17 17 H 1.09000 * 109.47291 * 329.99667 * 16 15 13 18 18 C 1.52993 * 109.47452 * 90.00149 * 16 15 13 19 19 C 1.50706 * 109.46552 * 209.99604 * 16 15 13 20 20 H 1.07999 * 120.00011 * 0.02562 * 19 16 15 21 21 C 1.37883 * 119.99939 * 179.97438 * 19 16 15 22 22 N 1.31513 * 119.99928 * 180.02562 * 21 19 16 23 23 Si 1.86795 * 119.99897 * 0.02562 * 21 19 16 24 24 H 1.48502 * 109.47636 * 89.99180 * 23 21 19 25 25 H 1.48501 * 109.47225 * 209.99421 * 23 21 19 26 26 H 1.48507 * 109.47192 * 329.99199 * 23 21 19 27 27 C 1.54620 * 101.80181 * 334.60286 * 11 10 9 28 28 C 1.34426 * 124.34977 * 270.02277 * 9 8 7 29 29 O 1.21295 * 124.93921 * 359.60313 * 28 9 8 30 30 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47294 * 300.00606 * 1 2 3 32 32 H 1.09000 * 109.46602 * 60.00058 * 1 2 3 33 33 H 1.07999 * 119.99408 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.90785 * 179.69203 * 5 4 3 35 35 H 1.07999 * 119.91650 * 180.02562 * 6 5 4 36 36 H 1.08000 * 120.00403 * 180.02562 * 7 6 5 37 37 H 1.09002 * 110.24169 * 78.03858 * 10 9 8 38 38 H 1.08996 * 110.31986 * 316.07945 * 10 9 8 39 39 H 1.09002 * 109.47115 * 299.99567 * 18 16 15 40 40 H 1.09000 * 109.47267 * 59.99502 * 18 16 15 41 41 H 1.09005 * 109.47407 * 179.97438 * 18 16 15 42 42 H 0.96999 * 119.99680 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.49298 * 143.45671 * 27 11 10 44 44 H 1.09001 * 110.49013 * 266.09767 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 0.0050 5 6 1.9226 3.6057 -0.0012 6 6 3.3033 3.6807 -0.0065 7 6 4.0615 2.5253 -0.0062 8 6 3.4373 1.2865 0.0000 9 7 4.2040 0.1136 0.0009 10 6 4.6615 -0.5759 1.2130 11 6 5.7951 -1.5170 0.7489 12 1 6.7669 -1.0320 0.8408 13 6 5.7679 -2.8136 1.5166 14 8 4.9629 -2.9739 2.4032 15 8 6.6380 -3.7903 1.2152 16 6 6.5537 -5.0119 1.9956 17 1 6.1933 -4.7789 2.9976 18 6 5.5853 -5.9838 1.3186 19 6 7.9184 -5.6446 2.0870 20 1 8.7644 -5.1753 1.6070 21 6 8.0871 -6.8221 2.7843 22 7 9.2781 -7.3740 2.8645 23 14 6.6239 -7.6334 3.6151 24 1 5.9770 -8.5766 2.6679 25 1 7.0852 -8.3759 4.8155 26 1 5.6460 -6.5925 4.0223 27 6 5.4287 -1.7452 -0.7358 28 6 4.6153 -0.5246 -1.1085 29 8 4.3710 -0.1726 -2.2433 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 0.2149 2.3196 0.0093 34 1 1.3340 4.5112 -0.0024 35 1 3.7903 4.6446 -0.0110 36 1 5.1397 2.5869 -0.0100 37 1 3.8463 -1.1535 1.6488 38 1 5.0419 0.1443 1.9373 39 1 4.5982 -5.5262 1.2524 40 1 5.9457 -6.2169 0.3166 41 1 5.5224 -6.9011 1.9041 42 1 9.3967 -8.2025 3.3547 43 1 6.3297 -1.8049 -1.3464 44 1 4.8311 -2.6500 -0.8466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:44 Heat of formation + Delta-G solvation = -112.067537 kcal Electronic energy + Delta-G solvation = -28659.235629 eV Core-core repulsion = 24542.941009 eV Total energy + Delta-G solvation = -4116.294620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31082 -40.17817 -39.35565 -37.65336 -36.65795 -35.83236 -33.55578 -33.11784 -30.74704 -30.54781 -29.53560 -27.83839 -27.54084 -25.36040 -24.48894 -22.92999 -22.47876 -21.40484 -20.08519 -19.64211 -18.42141 -17.79898 -17.40936 -16.75262 -16.61674 -16.19905 -16.02478 -15.61752 -15.39204 -15.20022 -14.90796 -14.72782 -14.27033 -14.04743 -13.77044 -13.67715 -13.13437 -12.96424 -12.91314 -12.75324 -12.48838 -12.34711 -12.00978 -11.95942 -11.75541 -11.55562 -11.46993 -11.44185 -11.34263 -10.94277 -10.30988 -10.24162 -9.96542 -9.85188 -9.65182 -9.22898 -9.18680 -9.04618 -8.73419 -8.49972 -6.26862 -4.29779 0.85832 1.07977 2.44944 2.59097 2.67187 2.96916 3.15441 3.23110 3.28020 3.29269 3.38713 4.14302 4.22429 4.38050 4.47372 4.53104 4.74181 4.76399 4.84063 4.85583 4.88506 5.02748 5.04310 5.15648 5.19674 5.31686 5.36088 5.42371 5.51116 5.70638 5.80704 5.86944 5.98907 6.09201 6.11943 6.21747 6.27544 6.33693 6.52607 6.53544 6.85692 6.95700 7.09125 7.26856 7.44066 8.06442 8.12720 8.48257 8.79769 9.29709 10.85150 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002687 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.562657 B =10419.213384 C =10864.629460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.138 3.862 4 C -0.206 4.206 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.070 4.070 8 C 0.112 3.888 9 N -0.571 5.571 10 C 0.119 3.881 11 C -0.097 4.097 12 H 0.129 0.871 13 C 0.466 3.534 14 O -0.514 6.514 15 O -0.334 6.334 16 C 0.191 3.809 17 H 0.047 0.953 18 C -0.171 4.171 19 C -0.526 4.526 20 H 0.088 0.912 21 C 0.080 3.920 22 N -0.887 5.887 23 Si 0.879 3.121 24 H -0.273 1.273 25 H -0.290 1.290 26 H -0.262 1.262 27 C -0.137 4.137 28 C 0.529 3.471 29 O -0.521 6.521 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.270 0.730 43 H 0.121 0.879 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 20.761 -4.700 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.091 3.909 4 C -0.225 4.225 5 C -0.092 4.092 6 C -0.170 4.170 7 C -0.089 4.089 8 C 0.022 3.978 9 N -0.302 5.302 10 C -0.002 4.002 11 C -0.117 4.117 12 H 0.147 0.853 13 C 0.308 3.692 14 O -0.404 6.404 15 O -0.249 6.249 16 C 0.138 3.862 17 H 0.065 0.935 18 C -0.228 4.228 19 C -0.564 4.564 20 H 0.106 0.894 21 C -0.123 4.123 22 N -0.524 5.524 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.217 1.217 26 H -0.187 1.187 27 C -0.177 4.177 28 C 0.317 3.683 29 O -0.395 6.395 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.139 0.861 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.856 20.506 -4.968 26.393 hybrid contribution -1.037 -0.572 0.657 1.354 sum -16.893 19.935 -4.310 26.483 Atomic orbital electron populations 1.23110 0.78211 1.04315 1.01235 1.86191 1.21434 1.26206 1.87977 1.19364 0.91469 0.84957 0.95141 1.21178 1.00177 0.91922 1.09233 1.21019 0.94709 0.96996 0.96515 1.20965 0.93770 0.98129 1.04168 1.21210 1.00541 0.90519 0.96641 1.16678 0.86323 0.85940 1.08853 1.45419 1.52580 1.24299 1.07881 1.22101 0.96991 0.94853 0.86300 1.21839 1.02009 0.92758 0.95049 0.85266 1.22772 0.78964 0.85737 0.81729 1.90621 1.37788 1.81240 1.30772 1.86515 1.53127 1.25786 1.59506 1.20977 0.97514 0.77356 0.90400 0.93509 1.22537 0.98112 0.99846 1.02331 1.20771 0.92302 1.08158 1.35179 0.89392 1.24731 0.96000 0.96246 0.95357 1.69832 1.21759 1.19459 1.41308 0.86977 0.82900 0.80253 0.79077 1.19970 1.21665 1.18703 1.22286 1.02572 0.97934 0.94928 1.20946 0.79043 0.84206 0.84065 1.90726 1.58453 1.69519 1.20846 0.88005 0.92499 0.92590 0.84977 0.85391 0.85220 0.84826 0.88607 0.89246 0.94393 0.91647 0.92469 0.92006 0.86120 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.78 10.24 -19.67 -0.20 -3.99 16 3 C 0.14 1.64 6.70 -39.07 -0.26 1.38 16 4 C -0.21 -1.86 9.04 -39.46 -0.36 -2.22 16 5 C -0.07 -0.58 10.04 -39.56 -0.40 -0.97 16 6 C -0.15 -1.24 10.04 -39.58 -0.40 -1.63 16 7 C -0.07 -0.71 9.96 -39.42 -0.39 -1.10 16 8 C 0.11 1.40 5.40 -83.50 -0.45 0.95 16 9 N -0.57 -7.45 2.70 -112.10 -0.30 -7.75 16 10 C 0.12 1.45 6.62 -3.12 -0.02 1.43 16 11 C -0.10 -1.24 3.65 -90.14 -0.33 -1.57 16 12 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 13 C 0.47 8.32 7.16 36.01 0.26 8.57 16 14 O -0.51 -10.36 14.75 -18.75 -0.28 -10.64 16 15 O -0.33 -7.06 9.86 -39.26 -0.39 -7.44 16 16 C 0.19 4.61 2.15 -27.88 -0.06 4.55 16 17 H 0.05 1.19 6.21 -51.93 -0.32 0.87 16 18 C -0.17 -3.76 9.03 37.15 0.34 -3.42 16 19 C -0.53 -14.63 9.48 -34.44 -0.33 -14.96 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 21 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 22 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 23 Si 0.88 21.17 24.37 -169.99 -4.14 17.03 16 24 H -0.27 -6.32 6.87 56.52 0.39 -5.94 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 27 C -0.14 -1.74 6.41 -26.72 -0.17 -1.91 16 28 C 0.53 7.71 7.99 -10.83 -0.09 7.63 16 29 O -0.52 -9.31 17.71 5.54 0.10 -9.21 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 32 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 33 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.10 1.32 7.01 -51.93 -0.36 0.96 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.28 3.27 -51.93 -0.17 1.12 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.11 1.48 7.89 -51.93 -0.41 1.07 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -34.74 368.42 -6.45 -41.19 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.80 Total: 0.62 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.76 Total: 0.07 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.47 Total: -33.17 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.77 Total: -31.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.74 -6.45 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.876 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds