Wall clock time and date at job start Tue Mar 31 2020 18:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35978 * 117.00092 * 2 1 4 4 C 1.38553 * 120.08192 * 0.23767 * 3 2 1 5 5 C 1.38250 * 120.01315 * 180.29638 * 4 3 2 6 6 C 1.38276 * 120.17733 * 359.71943 * 5 4 3 7 7 C 1.38198 * 120.16515 * 0.02562 * 6 5 4 8 8 C 1.38715 * 119.98530 * 359.97438 * 7 6 5 9 9 N 1.40123 * 120.08974 * 180.02562 * 8 7 6 10 10 C 1.46764 * 124.35227 * 90.00272 * 9 8 7 11 11 C 1.54475 * 105.47352 * 197.03587 * 10 9 8 12 12 H 1.09003 * 110.96723 * 92.74111 * 11 10 9 13 13 C 1.50706 * 110.97096 * 216.46207 * 11 10 9 14 14 O 1.20822 * 119.99559 * 356.91662 * 13 11 10 15 15 O 1.34230 * 120.00012 * 176.91400 * 13 11 10 16 16 C 1.45197 * 116.99422 * 180.02562 * 15 13 11 17 17 H 1.09000 * 109.47291 * 329.99667 * 16 15 13 18 18 C 1.52993 * 109.47452 * 90.00149 * 16 15 13 19 19 C 1.50706 * 109.46552 * 209.99604 * 16 15 13 20 20 H 1.07999 * 120.00011 * 0.02562 * 19 16 15 21 21 C 1.37883 * 119.99939 * 179.97438 * 19 16 15 22 22 N 1.31513 * 119.99928 * 180.02562 * 21 19 16 23 23 Si 1.86795 * 119.99897 * 0.02562 * 21 19 16 24 24 H 1.48502 * 109.47636 * 89.99180 * 23 21 19 25 25 H 1.48501 * 109.47225 * 209.99421 * 23 21 19 26 26 H 1.48507 * 109.47192 * 329.99199 * 23 21 19 27 27 C 1.54620 * 101.80181 * 334.60286 * 11 10 9 28 28 C 1.34426 * 124.34977 * 270.02277 * 9 8 7 29 29 O 1.21295 * 124.93921 * 359.60313 * 28 9 8 30 30 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47294 * 300.00606 * 1 2 3 32 32 H 1.09000 * 109.46602 * 60.00058 * 1 2 3 33 33 H 1.07999 * 119.99408 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.90785 * 179.69203 * 5 4 3 35 35 H 1.07999 * 119.91650 * 180.02562 * 6 5 4 36 36 H 1.08000 * 120.00403 * 180.02562 * 7 6 5 37 37 H 1.09002 * 110.24169 * 78.03858 * 10 9 8 38 38 H 1.08996 * 110.31986 * 316.07945 * 10 9 8 39 39 H 1.09002 * 109.47115 * 299.99567 * 18 16 15 40 40 H 1.09000 * 109.47267 * 59.99502 * 18 16 15 41 41 H 1.09005 * 109.47407 * 179.97438 * 18 16 15 42 42 H 0.96999 * 119.99680 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.49298 * 143.45671 * 27 11 10 44 44 H 1.09001 * 110.49013 * 266.09767 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 0.0050 5 6 1.9226 3.6057 -0.0012 6 6 3.3033 3.6807 -0.0065 7 6 4.0615 2.5253 -0.0062 8 6 3.4373 1.2865 0.0000 9 7 4.2040 0.1136 0.0009 10 6 4.6615 -0.5759 1.2130 11 6 5.7951 -1.5170 0.7489 12 1 6.7669 -1.0320 0.8408 13 6 5.7679 -2.8136 1.5166 14 8 4.9629 -2.9739 2.4032 15 8 6.6380 -3.7903 1.2152 16 6 6.5537 -5.0119 1.9956 17 1 6.1933 -4.7789 2.9976 18 6 5.5853 -5.9838 1.3186 19 6 7.9184 -5.6446 2.0870 20 1 8.7644 -5.1753 1.6070 21 6 8.0871 -6.8221 2.7843 22 7 9.2781 -7.3740 2.8645 23 14 6.6239 -7.6334 3.6151 24 1 5.9770 -8.5766 2.6679 25 1 7.0852 -8.3759 4.8155 26 1 5.6460 -6.5925 4.0223 27 6 5.4287 -1.7452 -0.7358 28 6 4.6153 -0.5246 -1.1085 29 8 4.3710 -0.1726 -2.2433 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 0.2149 2.3196 0.0093 34 1 1.3340 4.5112 -0.0024 35 1 3.7903 4.6446 -0.0110 36 1 5.1397 2.5869 -0.0100 37 1 3.8463 -1.1535 1.6488 38 1 5.0419 0.1443 1.9373 39 1 4.5982 -5.5262 1.2524 40 1 5.9457 -6.2169 0.3166 41 1 5.5224 -6.9011 1.9041 42 1 9.3967 -8.2025 3.3547 43 1 6.3297 -1.8049 -1.3464 44 1 4.8311 -2.6500 -0.8466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:43 Heat of formation + Delta-G solvation = -134.122608 kcal Electronic energy + Delta-G solvation = -28660.192009 eV Core-core repulsion = 24542.941009 eV Total energy + Delta-G solvation = -4117.250999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36059 -41.35503 -40.49471 -38.39921 -38.06523 -37.23121 -35.30934 -34.35293 -32.62352 -31.26091 -30.39466 -28.91973 -28.17947 -27.34533 -25.74791 -23.85228 -23.17643 -23.01373 -21.26430 -20.92722 -19.37350 -19.16775 -18.65238 -18.31229 -17.93780 -17.22825 -17.21077 -16.81301 -16.44981 -16.31392 -16.14659 -15.66870 -15.43169 -15.15691 -14.84683 -14.73133 -14.62673 -14.50437 -14.19835 -14.05161 -13.60568 -13.59266 -13.46172 -13.07559 -12.84610 -12.74529 -12.64918 -12.48340 -12.21774 -12.14419 -12.07784 -11.78131 -11.66041 -11.46365 -11.21718 -11.10798 -10.82394 -10.06300 -9.95324 -9.23416 -8.42901 -6.51557 0.14497 0.38146 1.15262 1.25573 1.32699 1.34309 1.41706 1.57294 1.95616 2.20837 2.30020 2.64724 2.90098 3.05043 3.30964 3.64844 3.71201 3.84940 3.92167 4.04053 4.19983 4.26469 4.26738 4.31487 4.33775 4.42041 4.42983 4.49691 4.53120 4.56100 4.65155 4.69842 4.73648 4.76356 4.79383 5.21413 5.22614 5.28330 5.35013 5.46057 5.53163 5.62713 5.76568 5.85331 6.13967 6.34872 6.53369 6.81597 7.00180 7.13022 8.72905 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002687 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.562657 B =10419.213384 C =10864.629460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.113 3.887 4 C -0.208 4.208 5 C -0.069 4.069 6 C -0.149 4.149 7 C -0.079 4.079 8 C 0.072 3.928 9 N -0.562 5.562 10 C 0.124 3.876 11 C -0.083 4.083 12 H 0.161 0.839 13 C 0.467 3.533 14 O -0.536 6.536 15 O -0.344 6.344 16 C 0.194 3.806 17 H 0.035 0.965 18 C -0.166 4.166 19 C -0.538 4.538 20 H 0.050 0.950 21 C 0.030 3.970 22 N -0.930 5.930 23 Si 0.939 3.061 24 H -0.254 1.254 25 H -0.285 1.285 26 H -0.255 1.255 27 C -0.132 4.132 28 C 0.526 3.474 29 O -0.561 6.561 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.142 0.858 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.275 0.725 43 H 0.137 0.863 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 22.611 -4.408 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.227 4.227 5 C -0.087 4.087 6 C -0.168 4.168 7 C -0.098 4.098 8 C -0.018 4.018 9 N -0.291 5.291 10 C 0.003 3.997 11 C -0.102 4.102 12 H 0.179 0.821 13 C 0.310 3.690 14 O -0.426 6.426 15 O -0.260 6.260 16 C 0.139 3.861 17 H 0.053 0.947 18 C -0.223 4.223 19 C -0.575 4.575 20 H 0.068 0.932 21 C -0.170 4.170 22 N -0.568 5.568 23 Si 0.764 3.236 24 H -0.179 1.179 25 H -0.212 1.212 26 H -0.179 1.179 27 C -0.172 4.172 28 C 0.315 3.685 29 O -0.439 6.439 30 H 0.126 0.874 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.155 0.845 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.858 22.384 -4.661 29.012 hybrid contribution -0.433 -0.989 0.561 1.216 sum -18.291 21.395 -4.101 28.445 Atomic orbital electron populations 1.23334 0.76372 1.05251 1.02526 1.86128 1.23582 1.27145 1.88362 1.19651 0.91687 0.85714 0.96332 1.21503 1.01271 0.91522 1.08393 1.21477 0.94948 0.97723 0.94535 1.21358 0.94133 0.98609 1.02677 1.21421 1.01289 0.90410 0.96704 1.17122 0.86941 0.86273 1.11421 1.45409 1.51880 1.24392 1.07413 1.22089 0.96089 0.95069 0.86492 1.21886 1.03960 0.90130 0.94202 0.82136 1.23594 0.77643 0.86133 0.81606 1.90611 1.38431 1.81636 1.31970 1.86504 1.54577 1.25713 1.59187 1.20651 0.95764 0.78955 0.90698 0.94714 1.22436 0.98514 0.99136 1.02258 1.20958 0.93212 1.08484 1.34875 0.93177 1.25548 0.98765 0.96804 0.95848 1.69956 1.24057 1.20283 1.42541 0.86008 0.79540 0.79647 0.78411 1.17885 1.21219 1.17902 1.22288 1.03008 0.97029 0.94909 1.21159 0.78948 0.84477 0.83869 1.90693 1.60236 1.70640 1.22335 0.87386 0.90865 0.91530 0.82857 0.82026 0.82395 0.84001 0.90369 0.86748 0.92320 0.91058 0.92711 0.91590 0.84450 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.38 10.24 -93.30 -0.96 -9.34 16 3 C 0.11 2.62 6.70 22.60 0.15 2.77 16 4 C -0.21 -3.34 9.04 22.35 0.20 -3.14 16 5 C -0.07 -0.85 10.04 22.28 0.22 -0.63 16 6 C -0.15 -2.02 10.04 22.27 0.22 -1.80 16 7 C -0.08 -1.48 9.96 22.37 0.22 -1.26 16 8 C 0.07 1.76 5.40 38.18 0.21 1.96 16 9 N -0.56 -14.39 2.70 -627.17 -1.69 -16.08 16 10 C 0.12 2.89 6.62 86.83 0.58 3.47 16 11 C -0.08 -2.01 3.65 -10.48 -0.04 -2.04 16 12 H 0.16 2.96 8.14 -2.39 -0.02 2.94 16 13 C 0.47 16.28 7.16 71.24 0.51 16.79 16 14 O -0.54 -21.25 14.75 21.97 0.32 -20.92 16 15 O -0.34 -14.45 9.86 -51.41 -0.51 -14.96 16 16 C 0.19 9.30 2.15 29.85 0.06 9.37 16 17 H 0.04 1.76 6.21 -2.39 -0.01 1.75 16 18 C -0.17 -7.06 9.03 71.98 0.65 -6.41 16 19 C -0.54 -30.50 9.48 25.60 0.24 -30.26 16 20 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 21 C 0.03 1.71 5.45 84.66 0.46 2.17 16 22 N -0.93 -55.98 13.96 21.45 0.30 -55.68 16 23 Si 0.94 43.15 24.37 68.60 1.67 44.83 16 24 H -0.25 -10.83 6.87 99.48 0.68 -10.14 16 25 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 27 C -0.13 -3.26 6.41 30.60 0.20 -3.07 16 28 C 0.53 15.28 7.99 87.92 0.70 15.98 16 29 O -0.56 -20.35 17.71 -3.08 -0.05 -20.40 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 32 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 33 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 34 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.08 2.14 7.01 -2.39 -0.02 2.13 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.05 2.34 3.27 -2.38 -0.01 2.33 16 42 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 44 H 0.11 2.81 7.89 -2.39 -0.02 2.79 16 Total: -1.00 -77.56 368.42 5.74 -71.82 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.95 Total: 15.44 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.71 Total: 5.30 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -1.39 Total: -71.76 kcal Atomic # 8 Polarization: -64.43 SS G_CDS: -1.19 Total: -65.62 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.67 Total: 44.83 kcal Total: -77.56 5.74 -71.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.300 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds