Wall clock time and date at job start Tue Mar 31 2020 18:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 C 1.50689 * 109.47447 * 239.99986 * 2 1 3 5 5 H 1.08003 * 120.00095 * 274.99785 * 4 2 1 6 6 C 1.37880 * 120.00211 * 94.99773 * 4 2 1 7 7 N 1.31514 * 120.00155 * 184.98278 * 6 4 2 8 8 Si 1.86802 * 119.99705 * 4.97764 * 6 4 2 9 9 H 1.48498 * 109.47107 * 84.95716 * 8 6 4 10 10 H 1.48499 * 109.47017 * 204.95762 * 8 6 4 11 11 H 1.48499 * 109.47130 * 324.95748 * 8 6 4 12 12 O 1.45207 * 109.47156 * 119.99587 * 2 1 3 13 13 C 1.34221 * 117.00128 * 270.00419 * 12 2 1 14 14 O 1.20824 * 120.00352 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99961 * 179.97438 * 13 12 2 16 16 O 1.42903 * 109.47474 * 179.97438 * 15 13 12 17 17 C 1.35894 * 117.00211 * 179.97438 * 16 15 13 18 18 C 1.38808 * 120.02041 * 0.02562 * 17 16 15 19 19 C 1.38174 * 120.08615 * 179.97438 * 18 17 16 20 20 C 1.38167 * 120.12252 * 0.04515 * 19 18 17 21 21 C 1.38889 * 120.04376 * 0.25249 * 20 19 18 22 22 N 1.39915 * 120.04819 * 179.72465 * 21 20 19 23 23 C 1.34779 * 119.99826 * 34.78496 * 22 21 20 24 24 O 1.21288 * 119.99756 * 5.33770 * 23 22 21 25 25 C 1.50696 * 120.00235 * 185.34017 * 23 22 21 26 26 C 1.53001 * 117.49742 * 248.62293 * 25 23 22 27 27 C 1.52994 * 60.00075 * 252.50760 * 26 25 23 28 28 C 1.38581 * 120.02195 * 180.02562 * 17 16 15 29 29 H 1.08994 * 109.47010 * 55.00830 * 1 2 3 30 30 H 1.09006 * 109.46779 * 175.00857 * 1 2 3 31 31 H 1.09003 * 109.46840 * 295.00625 * 1 2 3 32 32 H 0.97000 * 120.00100 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47393 * 60.00307 * 15 13 12 34 34 H 1.09003 * 109.47327 * 300.00272 * 15 13 12 35 35 H 1.07998 * 119.95740 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.94123 * 180.02562 * 19 18 17 37 37 H 1.08001 * 119.98231 * 179.97438 * 20 19 18 38 38 H 0.96996 * 120.00132 * 214.79264 * 22 21 20 39 39 H 1.09000 * 115.55374 * 34.32511 * 25 23 22 40 40 H 1.08997 * 117.49874 * 0.02562 * 26 25 23 41 41 H 1.09006 * 117.49975 * 145.01550 * 26 25 23 42 42 H 1.09001 * 117.49848 * 252.51340 * 27 26 25 43 43 H 1.08991 * 117.51998 * 107.47818 * 27 26 25 44 44 H 1.08006 * 120.06271 * 359.96103 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2303 5 1 2.1356 -1.7854 -1.2289 6 6 2.3604 0.0121 -2.3580 7 7 2.7048 -0.6131 -3.4625 8 14 2.3152 1.8792 -2.3169 9 1 3.6026 2.3939 -1.7850 10 1 2.1041 2.3996 -3.6916 11 1 1.2030 2.3282 -1.4413 12 8 2.0141 -0.6844 1.1857 13 6 2.2171 0.0641 2.2811 14 8 1.9982 1.2519 2.2504 15 6 2.7182 -0.5771 3.5495 16 8 2.8539 0.4188 4.5654 17 6 3.2984 0.0039 5.7807 18 6 3.5982 -1.3351 5.9904 19 6 4.0508 -1.7584 7.2255 20 6 4.2053 -0.8508 8.2557 21 6 3.9010 0.4892 8.0534 22 7 4.0520 1.4074 9.0983 23 6 5.0550 1.2589 9.9861 24 8 5.8834 0.3877 9.8251 25 6 5.1473 2.1752 11.1790 26 6 6.3100 3.1689 11.2181 27 6 6.3089 1.9557 12.1503 28 6 3.4525 0.9172 6.8115 29 1 -0.3633 0.5893 -0.8419 30 1 -0.3633 -1.0238 -0.0894 31 1 -0.3633 0.4344 0.9314 32 1 2.9352 -0.1049 -4.2559 33 1 3.6872 -1.0407 3.3641 34 1 2.0088 -1.3369 3.8775 35 1 3.4785 -2.0469 5.1870 36 1 4.2838 -2.8007 7.3859 37 1 4.5588 -1.1841 9.2202 38 1 3.4347 2.1507 9.1837 39 1 4.1946 2.4981 11.5986 40 1 7.0079 3.1602 10.3809 41 1 6.1223 4.1460 11.6634 42 1 6.1204 2.1345 13.2088 43 1 7.0060 1.1482 11.9267 44 1 3.2203 1.9596 6.6499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:07 Heat of formation + Delta-G solvation = -101.194665 kcal Electronic energy + Delta-G solvation = -26974.284223 eV Core-core repulsion = 22858.461086 eV Total energy + Delta-G solvation = -4115.823137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07910 -40.24617 -39.42345 -37.86035 -36.49421 -35.82611 -34.87612 -33.16635 -31.20228 -30.65691 -29.68115 -28.32801 -25.48126 -25.38693 -23.00804 -22.98056 -22.66574 -21.45677 -20.46827 -19.79315 -18.68164 -18.14052 -17.61082 -16.74163 -16.50268 -16.42231 -16.27545 -15.92743 -15.75095 -15.29295 -15.07162 -14.81477 -14.38698 -14.08023 -13.86653 -13.33109 -13.11284 -13.02665 -12.72269 -12.62819 -12.39862 -12.15514 -12.06730 -11.86934 -11.40404 -11.25783 -11.17045 -11.14747 -11.06759 -11.04025 -10.76751 -10.56220 -10.24548 -10.07540 -9.79776 -9.56111 -9.21079 -8.77789 -8.72368 -8.24470 -6.33466 -4.38033 0.95303 1.26086 2.04139 2.31115 2.69477 2.71390 3.18908 3.26122 3.28863 3.31734 3.58903 3.84296 4.09721 4.21554 4.23364 4.33180 4.53478 4.61427 4.87195 4.90453 5.00624 5.03116 5.06240 5.08290 5.13787 5.23367 5.30275 5.36228 5.41039 5.48735 5.60359 5.95667 6.02196 6.09879 6.10751 6.28938 6.35958 6.43170 6.57258 6.61939 6.95495 7.08063 7.19651 7.26623 7.43354 7.67519 8.14990 8.51468 8.76105 9.24950 10.77422 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.001896 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.624654 B =14761.558202 C =15248.099514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.182 3.818 3 H 0.049 0.951 4 C -0.520 4.520 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.878 5.878 8 Si 0.870 3.130 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.260 1.260 12 O -0.344 6.344 13 C 0.453 3.547 14 O -0.505 6.505 15 C 0.065 3.935 16 O -0.292 6.292 17 C 0.154 3.846 18 C -0.222 4.222 19 C -0.059 4.059 20 C -0.158 4.158 21 C 0.181 3.819 22 N -0.669 5.669 23 C 0.544 3.456 24 O -0.516 6.516 25 C -0.198 4.198 26 C -0.151 4.151 27 C -0.145 4.145 28 C -0.176 4.176 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.271 0.729 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.413 0.587 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 3.746 30.431 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.556 4.556 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.514 5.514 8 Si 0.695 3.305 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.185 1.185 12 O -0.260 6.260 13 C 0.295 3.705 14 O -0.394 6.394 15 C -0.011 4.011 16 O -0.205 6.205 17 C 0.108 3.892 18 C -0.241 4.241 19 C -0.078 4.078 20 C -0.179 4.179 21 C 0.087 3.913 22 N -0.314 5.314 23 C 0.332 3.668 24 O -0.391 6.391 25 C -0.219 4.219 26 C -0.189 4.189 27 C -0.182 4.182 28 C -0.197 4.197 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.250 0.750 39 H 0.146 0.854 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.301 3.705 30.022 30.429 hybrid contribution -0.398 1.276 -0.234 1.357 sum 2.903 4.981 29.788 30.341 Atomic orbital electron populations 1.22244 0.97274 1.01750 0.99832 1.21094 0.91610 0.94256 0.80030 0.93353 1.20783 1.45655 0.96360 0.92849 0.89523 1.24920 0.93400 0.98706 0.95177 1.69847 1.43596 1.36329 1.01674 0.86957 0.80028 0.85639 0.77842 1.19489 1.20602 1.18459 1.86657 1.75754 1.43385 1.20229 1.22729 0.75757 0.86214 0.85840 1.90632 1.47652 1.16650 1.84418 1.22058 1.03716 0.90300 0.85051 1.86097 1.80693 1.35709 1.17968 1.18628 0.93599 0.92334 0.84647 1.21359 1.08123 0.94827 0.99795 1.20814 0.95695 0.99563 0.91716 1.20974 1.04952 0.91106 1.00834 1.17283 0.98396 0.88954 0.86659 1.43425 1.31633 1.29305 1.27008 1.19839 0.80024 0.84301 0.82672 1.90742 1.39344 1.34194 1.74801 1.22177 0.97148 1.03938 0.98634 1.22995 0.98269 0.94695 1.02931 1.22989 0.98642 1.00479 0.96137 1.19987 1.09728 0.99970 0.90018 0.91806 0.92246 0.95051 0.91861 0.87751 0.87892 0.84771 0.85153 0.84960 0.75043 0.85401 0.88015 0.87468 0.87637 0.87226 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.53 37.16 0.35 -3.00 16 2 C 0.18 4.53 2.22 -27.89 -0.06 4.47 16 3 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 4 C -0.52 -14.52 9.24 -34.44 -0.32 -14.84 16 5 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 6 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 7 N -0.88 -25.79 13.96 55.43 0.77 -25.01 16 8 Si 0.87 21.29 27.00 -169.99 -4.59 16.70 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.26 -6.22 6.81 56.52 0.38 -5.84 16 12 O -0.34 -7.69 9.86 -39.23 -0.39 -8.08 16 13 C 0.45 9.07 8.01 36.00 0.29 9.36 16 14 O -0.50 -11.68 15.72 -25.48 -0.40 -12.08 16 15 C 0.06 0.94 5.33 36.00 0.19 1.13 16 16 O -0.29 -4.51 9.67 -39.36 -0.38 -4.89 16 17 C 0.15 2.01 6.68 -39.24 -0.26 1.75 16 18 C -0.22 -2.47 9.04 -39.39 -0.36 -2.83 16 19 C -0.06 -0.61 10.03 -39.63 -0.40 -1.01 16 20 C -0.16 -1.77 8.65 -39.37 -0.34 -2.11 16 21 C 0.18 1.96 6.25 -83.72 -0.52 1.44 16 22 N -0.67 -5.46 5.33 -9.88 -0.05 -5.51 16 23 C 0.54 4.93 7.34 -10.99 -0.08 4.85 16 24 O -0.52 -6.59 14.05 5.55 0.08 -6.51 16 25 C -0.20 -1.11 6.19 -91.77 -0.57 -1.68 16 26 C -0.15 -0.74 10.23 -26.73 -0.27 -1.02 16 27 C -0.15 -0.77 10.04 -26.73 -0.27 -1.04 16 28 C -0.18 -2.07 9.90 -39.24 -0.39 -2.46 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 33 H 0.10 1.28 7.66 -51.93 -0.40 0.88 16 34 H 0.10 1.17 7.66 -51.93 -0.40 0.77 16 35 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.50 6.52 -52.49 -0.34 1.16 16 38 H 0.41 2.04 8.82 -40.82 -0.36 1.68 16 39 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.11 0.77 7.67 -51.93 -0.40 0.37 16 44 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -34.86 379.18 -8.18 -43.04 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.83 Total: 1.37 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.10 Total: -4.75 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.72 Total: -30.52 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.09 Total: -31.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.86 -8.18 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.156 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds