Wall clock time and date at job start Tue Mar 31 2020 18:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 C 1.50689 * 109.47447 * 239.99986 * 2 1 3 5 5 H 1.08003 * 120.00095 * 274.99785 * 4 2 1 6 6 C 1.37880 * 120.00211 * 94.99773 * 4 2 1 7 7 N 1.31514 * 120.00155 * 184.98278 * 6 4 2 8 8 Si 1.86802 * 119.99705 * 4.97764 * 6 4 2 9 9 H 1.48498 * 109.47107 * 84.95716 * 8 6 4 10 10 H 1.48499 * 109.47017 * 204.95762 * 8 6 4 11 11 H 1.48499 * 109.47130 * 324.95748 * 8 6 4 12 12 O 1.45207 * 109.47156 * 119.99587 * 2 1 3 13 13 C 1.34221 * 117.00128 * 270.00419 * 12 2 1 14 14 O 1.20824 * 120.00352 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99961 * 179.97438 * 13 12 2 16 16 O 1.42903 * 109.47474 * 179.97438 * 15 13 12 17 17 C 1.35894 * 117.00211 * 179.97438 * 16 15 13 18 18 C 1.38808 * 120.02041 * 0.02562 * 17 16 15 19 19 C 1.38174 * 120.08615 * 179.97438 * 18 17 16 20 20 C 1.38167 * 120.12252 * 0.04515 * 19 18 17 21 21 C 1.38889 * 120.04376 * 0.25249 * 20 19 18 22 22 N 1.39915 * 120.04819 * 179.72465 * 21 20 19 23 23 C 1.34779 * 119.99826 * 34.78496 * 22 21 20 24 24 O 1.21288 * 119.99756 * 5.33770 * 23 22 21 25 25 C 1.50696 * 120.00235 * 185.34017 * 23 22 21 26 26 C 1.53001 * 117.49742 * 248.62293 * 25 23 22 27 27 C 1.52994 * 60.00075 * 252.50760 * 26 25 23 28 28 C 1.38581 * 120.02195 * 180.02562 * 17 16 15 29 29 H 1.08994 * 109.47010 * 55.00830 * 1 2 3 30 30 H 1.09006 * 109.46779 * 175.00857 * 1 2 3 31 31 H 1.09003 * 109.46840 * 295.00625 * 1 2 3 32 32 H 0.97000 * 120.00100 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47393 * 60.00307 * 15 13 12 34 34 H 1.09003 * 109.47327 * 300.00272 * 15 13 12 35 35 H 1.07998 * 119.95740 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.94123 * 180.02562 * 19 18 17 37 37 H 1.08001 * 119.98231 * 179.97438 * 20 19 18 38 38 H 0.96996 * 120.00132 * 214.79264 * 22 21 20 39 39 H 1.09000 * 115.55374 * 34.32511 * 25 23 22 40 40 H 1.08997 * 117.49874 * 0.02562 * 26 25 23 41 41 H 1.09006 * 117.49975 * 145.01550 * 26 25 23 42 42 H 1.09001 * 117.49848 * 252.51340 * 27 26 25 43 43 H 1.08991 * 117.51998 * 107.47818 * 27 26 25 44 44 H 1.08006 * 120.06271 * 359.96103 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2303 5 1 2.1356 -1.7854 -1.2289 6 6 2.3604 0.0121 -2.3580 7 7 2.7048 -0.6131 -3.4625 8 14 2.3152 1.8792 -2.3169 9 1 3.6026 2.3939 -1.7850 10 1 2.1041 2.3996 -3.6916 11 1 1.2030 2.3282 -1.4413 12 8 2.0141 -0.6844 1.1857 13 6 2.2171 0.0641 2.2811 14 8 1.9982 1.2519 2.2504 15 6 2.7182 -0.5771 3.5495 16 8 2.8539 0.4188 4.5654 17 6 3.2984 0.0039 5.7807 18 6 3.5982 -1.3351 5.9904 19 6 4.0508 -1.7584 7.2255 20 6 4.2053 -0.8508 8.2557 21 6 3.9010 0.4892 8.0534 22 7 4.0520 1.4074 9.0983 23 6 5.0550 1.2589 9.9861 24 8 5.8834 0.3877 9.8251 25 6 5.1473 2.1752 11.1790 26 6 6.3100 3.1689 11.2181 27 6 6.3089 1.9557 12.1503 28 6 3.4525 0.9172 6.8115 29 1 -0.3633 0.5893 -0.8419 30 1 -0.3633 -1.0238 -0.0894 31 1 -0.3633 0.4344 0.9314 32 1 2.9352 -0.1049 -4.2559 33 1 3.6872 -1.0407 3.3641 34 1 2.0088 -1.3369 3.8775 35 1 3.4785 -2.0469 5.1870 36 1 4.2838 -2.8007 7.3859 37 1 4.5588 -1.1841 9.2202 38 1 3.4347 2.1507 9.1837 39 1 4.1946 2.4981 11.5986 40 1 7.0079 3.1602 10.3809 41 1 6.1223 4.1460 11.6634 42 1 6.1204 2.1345 13.2088 43 1 7.0060 1.1482 11.9267 44 1 3.2203 1.9596 6.6499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:06 Heat of formation + Delta-G solvation = -122.601539 kcal Electronic energy + Delta-G solvation = -26975.212495 eV Core-core repulsion = 22858.461086 eV Total energy + Delta-G solvation = -4116.751408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.91946 -41.52044 -40.65124 -38.76331 -37.60275 -37.02405 -35.67693 -35.22204 -32.80672 -31.89872 -30.54934 -29.50983 -27.48246 -26.05780 -24.01647 -23.86501 -23.34231 -22.67364 -21.48746 -21.17893 -19.64825 -19.50483 -18.73931 -18.35494 -17.84911 -17.71818 -17.18423 -17.01869 -16.56959 -16.36529 -16.18938 -15.95648 -15.72412 -15.02457 -14.84430 -14.65107 -14.56510 -14.43656 -14.05649 -13.78991 -13.65811 -13.50951 -13.06883 -12.98464 -12.94131 -12.62496 -12.48168 -12.40158 -12.18340 -11.98042 -11.57648 -11.55954 -11.51663 -11.39302 -11.33827 -11.21385 -10.99743 -10.90186 -9.58258 -9.11793 -8.49112 -6.58948 0.12917 0.36952 1.10743 1.15302 1.26944 1.28741 1.37447 1.38130 1.89022 2.17772 2.58423 2.69824 2.89595 2.89841 3.55511 3.60083 3.80624 3.84512 3.94103 3.96622 4.01879 4.11760 4.14715 4.18457 4.20391 4.32064 4.47395 4.56034 4.59231 4.65366 4.73954 4.86007 4.88646 5.01598 5.16096 5.19717 5.22473 5.27107 5.29310 5.35574 5.44784 5.55898 5.73287 6.10976 6.24013 6.32665 6.50282 6.79985 7.01538 7.08422 8.65717 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.001896 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.624654 B =14761.558202 C =15248.099514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H 0.037 0.963 4 C -0.530 4.530 5 H 0.053 0.947 6 C 0.037 3.963 7 N -0.919 5.919 8 Si 0.926 3.074 9 H -0.271 1.271 10 H -0.266 1.266 11 H -0.251 1.251 12 O -0.351 6.351 13 C 0.450 3.550 14 O -0.539 6.539 15 C 0.074 3.926 16 O -0.316 6.316 17 C 0.134 3.866 18 C -0.222 4.222 19 C -0.058 4.058 20 C -0.168 4.168 21 C 0.177 3.823 22 N -0.659 5.659 23 C 0.538 3.462 24 O -0.560 6.560 25 C -0.197 4.197 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.184 4.184 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.277 0.723 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.128 0.872 38 H 0.429 0.571 39 H 0.160 0.840 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 4.753 32.710 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.071 0.929 6 C -0.165 4.165 7 N -0.556 5.556 8 Si 0.749 3.251 9 H -0.196 1.196 10 H -0.190 1.190 11 H -0.175 1.175 12 O -0.267 6.267 13 C 0.294 3.706 14 O -0.429 6.429 15 C -0.001 4.001 16 O -0.230 6.230 17 C 0.089 3.911 18 C -0.241 4.241 19 C -0.077 4.077 20 C -0.189 4.189 21 C 0.082 3.918 22 N -0.305 5.305 23 C 0.328 3.672 24 O -0.437 6.437 25 C -0.218 4.218 26 C -0.182 4.182 27 C -0.187 4.187 28 C -0.205 4.205 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.146 0.854 38 H 0.268 0.732 39 H 0.177 0.823 40 H 0.103 0.897 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.708 4.725 32.327 32.783 hybrid contribution -0.167 0.885 -0.811 1.212 sum 2.541 5.611 31.516 32.112 Atomic orbital electron populations 1.22154 0.95049 1.02519 1.00830 1.20906 0.93212 0.93047 0.79944 0.94531 1.20899 1.46017 0.95058 0.94792 0.92918 1.25634 0.93057 1.03081 0.94700 1.69945 1.45020 1.38211 1.02474 0.86063 0.80115 0.80290 0.78664 1.19622 1.19033 1.17479 1.86592 1.76157 1.43406 1.20578 1.23732 0.74550 0.85852 0.86510 1.90613 1.49170 1.18232 1.84928 1.22129 1.05659 0.89879 0.82435 1.86033 1.81548 1.36563 1.18883 1.18835 0.94881 0.93475 0.83937 1.21576 1.07526 0.94369 1.00606 1.21115 0.94737 1.00697 0.91110 1.21126 1.05040 0.91625 1.01063 1.17383 0.97896 0.89438 0.87044 1.43423 1.31731 1.29260 1.26092 1.20520 0.79246 0.84131 0.83269 1.90720 1.40941 1.36196 1.75880 1.22276 0.98815 1.03501 0.97199 1.23077 0.97225 0.95685 1.02246 1.23051 0.98074 1.00071 0.97494 1.20113 1.09969 1.00273 0.90182 0.91604 0.91511 0.93332 0.91380 0.85234 0.84232 0.82777 0.82694 0.85437 0.73207 0.82291 0.89685 0.84825 0.85209 0.89548 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.29 9.53 71.98 0.69 -5.61 16 2 C 0.18 8.97 2.22 29.85 0.07 9.04 16 3 H 0.04 1.89 4.30 -2.39 -0.01 1.88 16 4 C -0.53 -30.13 9.24 25.60 0.24 -29.89 16 5 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 6 C 0.04 2.09 5.47 84.66 0.46 2.56 16 7 N -0.92 -54.79 13.96 21.45 0.30 -54.50 16 8 Si 0.93 43.74 27.00 68.60 1.85 45.59 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.25 -11.39 6.81 99.48 0.68 -10.71 16 12 O -0.35 -15.46 9.86 -51.33 -0.51 -15.96 16 13 C 0.45 17.46 8.01 71.24 0.57 18.03 16 14 O -0.54 -24.56 15.72 28.40 0.45 -24.11 16 15 C 0.07 1.97 5.33 71.24 0.38 2.35 16 16 O -0.32 -9.30 9.67 -73.27 -0.71 -10.01 16 17 C 0.13 3.29 6.68 22.49 0.15 3.44 16 18 C -0.22 -4.44 9.04 22.39 0.20 -4.24 16 19 C -0.06 -1.09 10.03 22.24 0.22 -0.87 16 20 C -0.17 -3.61 8.65 22.41 0.19 -3.42 16 21 C 0.18 3.69 6.25 38.14 0.24 3.92 16 22 N -0.66 -10.04 5.33 -303.55 -1.62 -11.66 16 23 C 0.54 9.37 7.34 87.66 0.64 10.01 16 24 O -0.56 -14.43 14.05 -3.05 -0.04 -14.47 16 25 C -0.20 -1.83 6.19 -11.54 -0.07 -1.90 16 26 C -0.15 -1.16 10.23 30.59 0.31 -0.85 16 27 C -0.15 -1.39 10.04 30.59 0.31 -1.08 16 28 C -0.18 -4.17 9.90 22.49 0.22 -3.95 16 29 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.13 2.81 7.66 -2.38 -0.02 2.79 16 34 H 0.14 2.69 7.66 -2.39 -0.02 2.68 16 35 H 0.15 2.37 6.29 -2.91 -0.02 2.35 16 36 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.13 2.86 6.52 -2.91 -0.02 2.84 16 38 H 0.43 3.54 8.82 -92.71 -0.82 2.72 16 39 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.09 1.23 7.67 -2.39 -0.02 1.21 16 44 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -77.54 379.18 4.74 -72.80 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.19 Total: 14.76 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 4.82 Total: -2.45 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -1.32 Total: -66.15 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -0.81 Total: -64.56 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.85 Total: 45.59 kcal Total: -77.54 4.74 -72.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.802 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds