Wall clock time and date at job start Tue Mar 31 2020 17:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99699 * 2 1 4 4 O 1.20819 * 120.00157 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99608 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46614 * 179.97438 * 5 3 2 7 7 C 1.36745 * 120.00121 * 263.01657 * 6 5 3 8 8 H 1.07996 * 120.00099 * 202.62277 * 7 6 5 9 9 C 1.39076 * 119.99626 * 22.62863 * 7 6 5 10 10 N 1.31356 * 120.00039 * 6.92917 * 9 7 6 11 11 Si 1.86800 * 119.99767 * 186.92908 * 9 7 6 12 12 H 1.48505 * 109.46980 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47015 * 119.99818 * 11 9 7 14 14 H 1.48495 * 109.47105 * 239.99964 * 11 9 7 15 15 C 1.34777 * 119.99939 * 83.02851 * 6 5 3 16 16 O 1.21846 * 119.99686 * 4.99579 * 15 6 5 17 17 C 1.41334 * 120.00120 * 184.99949 * 15 6 5 18 18 C 1.35788 * 120.00346 * 175.09916 * 17 15 6 19 19 C 1.41511 * 120.00330 * 179.97438 * 18 17 15 20 20 C 1.38038 * 126.10748 * 359.97438 * 19 18 17 21 21 C 1.40292 * 106.52157 * 179.97438 * 20 19 18 22 22 C 1.35168 * 107.21851 * 0.02562 * 21 20 19 23 23 C 1.50704 * 125.48271 * 179.97438 * 22 21 20 24 24 H 1.08993 * 115.55497 * 334.30792 * 23 22 21 25 25 C 1.53000 * 117.49841 * 188.61876 * 23 22 21 26 26 C 1.52998 * 117.49966 * 119.99336 * 23 22 21 27 27 H 1.08996 * 117.50099 * 359.97438 * 26 23 22 28 28 C 1.53001 * 117.49898 * 214.98083 * 26 23 22 29 29 O 1.34042 * 109.03977 * 0.23663 * 22 21 20 30 30 H 1.08993 * 109.47183 * 300.00095 * 1 2 3 31 31 H 1.08996 * 109.47322 * 60.00302 * 1 2 3 32 32 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46803 * 59.99662 * 5 3 2 34 34 H 1.08997 * 109.47094 * 300.00061 * 5 3 2 35 35 H 0.97003 * 120.00107 * 180.02562 * 10 9 7 36 36 H 1.08005 * 119.99906 * 355.10276 * 17 15 6 37 37 H 1.08006 * 119.99406 * 359.97438 * 18 17 15 38 38 H 1.07994 * 126.73578 * 359.96318 * 20 19 18 39 39 H 1.08004 * 126.38801 * 179.97438 * 21 20 19 40 40 H 1.09001 * 117.49414 * 145.02173 * 25 23 22 41 41 H 1.08998 * 117.50075 * 0.02562 * 25 23 22 42 42 H 1.08995 * 109.47049 * 60.00498 * 28 26 23 43 43 H 1.08997 * 109.46963 * 299.99947 * 28 26 23 44 44 H 1.08998 * 109.47232 * 180.02562 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.3140 3.2939 -1.1759 8 1 4.9491 4.1674 -1.1681 9 6 3.8341 2.7937 -2.3815 10 7 2.9548 1.8178 -2.3843 11 14 4.4399 3.5097 -3.9970 12 1 5.4200 4.5911 -3.7226 13 1 5.0911 2.4423 -4.7982 14 1 3.2898 4.0652 -4.7545 15 6 4.0363 3.3669 1.1580 16 8 3.8290 2.7970 2.2148 17 6 4.3340 4.7485 1.1466 18 6 4.2915 5.4618 2.3013 19 6 4.5901 6.8450 2.2900 20 6 4.9384 7.5930 1.1834 21 6 5.1422 8.9049 1.6367 22 6 4.9167 8.9074 2.9694 23 6 5.0214 10.1096 3.8721 24 1 5.6907 10.8984 3.5289 25 6 4.9253 9.8710 5.3804 26 6 3.7641 10.5320 4.6348 27 1 2.8611 9.9406 4.4834 28 6 3.5426 12.0294 4.8575 29 8 4.5906 7.6673 3.3600 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9564 0.7805 -0.8892 34 1 3.9557 0.7809 0.8908 35 1 2.6203 1.4687 -3.2252 36 1 4.5953 5.2370 0.2195 37 1 4.0298 4.9733 3.2284 38 1 5.0352 7.2379 0.1681 39 1 5.4270 9.7543 1.0334 40 1 5.5314 10.5030 6.0294 41 1 4.7868 8.8445 5.7197 42 1 3.4780 12.5344 3.8938 43 1 4.3764 12.4392 5.4274 44 1 2.6156 12.1812 5.4105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120622913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:21 Heat of formation + Delta-G solvation = -49.770679 kcal Electronic energy + Delta-G solvation = -27957.119693 eV Core-core repulsion = 23843.526468 eV Total energy + Delta-G solvation = -4113.593225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35298 -39.57879 -38.49786 -37.90307 -35.60983 -34.73423 -33.82041 -32.52374 -31.70743 -29.71740 -28.80365 -27.57992 -26.33292 -25.15794 -23.85912 -21.91860 -21.49362 -20.89841 -20.16533 -19.65918 -18.97950 -17.26155 -16.86438 -16.60250 -16.32952 -15.88447 -15.51884 -15.34843 -14.95305 -14.63817 -14.40752 -14.24026 -13.74525 -13.56452 -13.31790 -12.95038 -12.90116 -12.65799 -12.49120 -12.38165 -12.29609 -12.02097 -11.70807 -11.69322 -11.39901 -11.37028 -11.22530 -10.85426 -10.82367 -10.62181 -10.38520 -10.30267 -10.07297 -9.86011 -9.67678 -9.38089 -9.11236 -8.73721 -8.06533 -7.39903 -6.63417 -4.14819 0.96597 2.29695 2.95147 2.99798 3.10256 3.14114 3.14719 3.60198 3.64276 3.68843 3.96700 4.29445 4.37310 4.56553 4.61889 4.71526 4.98223 5.03470 5.09747 5.17166 5.31697 5.39761 5.48080 5.53260 5.68341 5.75001 5.76379 5.78639 5.81133 5.92178 5.95201 6.01647 6.07271 6.14428 6.23815 6.35672 6.46377 6.62599 6.68798 6.75582 7.01721 7.16903 7.37918 7.41822 7.51788 8.10809 8.82377 9.06191 9.22620 9.66543 10.41280 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002757 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.538689 B =10155.162391 C =11378.813092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.373 6.373 3 C 0.489 3.511 4 O -0.505 6.505 5 C 0.152 3.848 6 N -0.412 5.412 7 C -0.325 4.325 8 H 0.107 0.893 9 C 0.037 3.963 10 N -0.870 5.870 11 Si 0.935 3.065 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.486 3.514 16 O -0.609 6.609 17 C -0.117 4.117 18 C -0.067 4.067 19 C 0.034 3.966 20 C -0.193 4.193 21 C -0.197 4.197 22 C 0.009 3.991 23 C -0.076 4.076 24 H 0.132 0.868 25 C -0.167 4.167 26 C -0.143 4.143 27 H 0.108 0.892 28 C -0.122 4.122 29 O -0.167 6.167 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.276 0.724 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 10.825 6.010 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.330 3.670 4 O -0.391 6.391 5 C 0.027 3.973 6 N -0.128 5.128 7 C -0.452 4.452 8 H 0.125 0.875 9 C -0.168 4.168 10 N -0.508 5.508 11 Si 0.761 3.239 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.279 3.721 16 O -0.497 6.497 17 C -0.138 4.138 18 C -0.089 4.089 19 C -0.016 4.016 20 C -0.213 4.213 21 C -0.216 4.216 22 C -0.042 4.042 23 C -0.094 4.094 24 H 0.150 0.850 25 C -0.204 4.204 26 C -0.161 4.161 27 H 0.126 0.874 28 C -0.179 4.179 29 O -0.064 6.064 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.097 10.600 6.610 12.667 hybrid contribution -0.154 0.383 -1.397 1.456 sum 1.943 10.983 5.214 12.312 Atomic orbital electron populations 1.22943 0.78678 1.01872 1.01634 1.86455 1.21668 1.35333 1.85628 1.23868 0.92218 0.80545 0.70341 1.90520 1.66589 1.36433 1.45509 1.20579 0.87257 0.85430 1.04073 1.43354 1.54698 1.08184 1.06539 1.19825 1.28948 1.13755 0.82698 0.87513 1.25415 0.94658 0.96411 1.00333 1.69677 1.27056 1.25723 1.28332 0.85723 0.78629 0.79006 0.80546 1.18976 1.20279 1.20482 1.16719 0.83870 0.87346 0.84117 1.90703 1.57337 1.70982 1.30728 1.22112 0.98681 0.95269 0.97748 1.19972 1.00942 0.87857 1.00084 1.19909 1.05882 0.91464 0.84327 1.22268 1.06283 0.93100 0.99619 1.21311 1.08181 0.98338 0.93782 1.21396 1.05299 0.83757 0.93764 1.20544 1.02767 0.94232 0.91895 0.84996 1.23192 1.01456 1.02809 0.92923 1.22528 0.93164 0.97326 1.03080 0.87419 1.21378 1.02037 0.92651 1.01840 1.83971 1.68755 1.17742 1.35921 0.93104 0.92673 0.89520 0.84930 0.89954 0.91291 0.85162 0.84773 0.82790 0.83540 0.88020 0.88034 0.91920 0.92360 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.82 16 2 O -0.37 -8.07 10.57 -39.25 -0.41 -8.49 16 3 C 0.49 12.16 6.08 36.01 0.22 12.37 16 4 O -0.51 -14.10 15.80 -18.74 -0.30 -14.40 16 5 C 0.15 3.65 5.16 -5.19 -0.03 3.62 16 6 N -0.41 -10.33 2.18 -119.43 -0.26 -10.59 16 7 C -0.32 -7.89 8.96 -15.05 -0.13 -8.02 16 8 H 0.11 2.40 6.14 -52.49 -0.32 2.07 16 9 C 0.04 0.89 5.18 -17.44 -0.09 0.80 16 10 N -0.87 -21.74 8.82 55.50 0.49 -21.25 16 11 Si 0.94 18.60 29.56 -169.99 -5.02 13.58 16 12 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 13 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.49 12.12 7.12 -15.08 -0.11 12.02 16 16 O -0.61 -16.41 15.79 5.06 0.08 -16.33 16 17 C -0.12 -2.52 8.60 -39.28 -0.34 -2.85 16 18 C -0.07 -1.32 9.51 -39.21 -0.37 -1.69 16 19 C 0.03 0.60 7.03 -38.41 -0.27 0.33 16 20 C -0.19 -3.10 10.22 -38.88 -0.40 -3.50 16 21 C -0.20 -2.75 10.76 -39.90 -0.43 -3.18 16 22 C 0.01 0.12 6.79 -35.40 -0.24 -0.12 16 23 C -0.08 -0.79 5.95 -91.77 -0.55 -1.34 16 24 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.17 -1.57 9.81 -26.73 -0.26 -1.84 16 26 C -0.14 -1.34 6.11 -90.62 -0.55 -1.90 16 27 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 28 C -0.12 -0.85 10.19 37.16 0.38 -0.47 16 29 O -0.17 -2.80 10.35 4.62 0.05 -2.75 16 30 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.13 3.13 6.27 -51.93 -0.33 2.80 16 34 H 0.08 1.86 7.57 -51.93 -0.39 1.47 16 35 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.13 2.59 4.86 -52.48 -0.25 2.33 16 37 H 0.13 2.73 7.47 -52.48 -0.39 2.33 16 38 H 0.15 2.30 7.15 -52.49 -0.38 1.93 16 39 H 0.15 1.63 8.06 -52.48 -0.42 1.20 16 40 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 41 H 0.10 1.09 7.94 -51.93 -0.41 0.68 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -31.50 379.08 -7.59 -39.09 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.82 Total: 9.37 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.11 Total: 6.05 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.23 Total: -31.83 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.58 Total: -41.97 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.50 -7.59 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120622913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.681 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds