Wall clock time and date at job start Tue Mar 31 2020 17:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99699 * 2 1 4 4 O 1.20819 * 120.00157 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99608 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46614 * 179.97438 * 5 3 2 7 7 C 1.36745 * 120.00121 * 263.01657 * 6 5 3 8 8 H 1.07996 * 120.00099 * 202.62277 * 7 6 5 9 9 C 1.39076 * 119.99626 * 22.62863 * 7 6 5 10 10 N 1.31356 * 120.00039 * 6.92917 * 9 7 6 11 11 Si 1.86800 * 119.99767 * 186.92908 * 9 7 6 12 12 H 1.48505 * 109.46980 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47015 * 119.99818 * 11 9 7 14 14 H 1.48495 * 109.47105 * 239.99964 * 11 9 7 15 15 C 1.34777 * 119.99939 * 83.02851 * 6 5 3 16 16 O 1.21846 * 119.99686 * 4.99579 * 15 6 5 17 17 C 1.41334 * 120.00120 * 184.99949 * 15 6 5 18 18 C 1.35788 * 120.00346 * 175.09916 * 17 15 6 19 19 C 1.41511 * 120.00330 * 179.97438 * 18 17 15 20 20 C 1.38038 * 126.10748 * 359.97438 * 19 18 17 21 21 C 1.40292 * 106.52157 * 179.97438 * 20 19 18 22 22 C 1.35168 * 107.21851 * 0.02562 * 21 20 19 23 23 C 1.50704 * 125.48271 * 179.97438 * 22 21 20 24 24 H 1.08993 * 115.55497 * 334.30792 * 23 22 21 25 25 C 1.53000 * 117.49841 * 188.61876 * 23 22 21 26 26 C 1.52998 * 117.49966 * 119.99336 * 23 22 21 27 27 H 1.08996 * 117.50099 * 359.97438 * 26 23 22 28 28 C 1.53001 * 117.49898 * 214.98083 * 26 23 22 29 29 O 1.34042 * 109.03977 * 0.23663 * 22 21 20 30 30 H 1.08993 * 109.47183 * 300.00095 * 1 2 3 31 31 H 1.08996 * 109.47322 * 60.00302 * 1 2 3 32 32 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46803 * 59.99662 * 5 3 2 34 34 H 1.08997 * 109.47094 * 300.00061 * 5 3 2 35 35 H 0.97003 * 120.00107 * 180.02562 * 10 9 7 36 36 H 1.08005 * 119.99906 * 355.10276 * 17 15 6 37 37 H 1.08006 * 119.99406 * 359.97438 * 18 17 15 38 38 H 1.07994 * 126.73578 * 359.96318 * 20 19 18 39 39 H 1.08004 * 126.38801 * 179.97438 * 21 20 19 40 40 H 1.09001 * 117.49414 * 145.02173 * 25 23 22 41 41 H 1.08998 * 117.50075 * 0.02562 * 25 23 22 42 42 H 1.08995 * 109.47049 * 60.00498 * 28 26 23 43 43 H 1.08997 * 109.46963 * 299.99947 * 28 26 23 44 44 H 1.08998 * 109.47232 * 180.02562 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.3140 3.2939 -1.1759 8 1 4.9491 4.1674 -1.1681 9 6 3.8341 2.7937 -2.3815 10 7 2.9548 1.8178 -2.3843 11 14 4.4399 3.5097 -3.9970 12 1 5.4200 4.5911 -3.7226 13 1 5.0911 2.4423 -4.7982 14 1 3.2898 4.0652 -4.7545 15 6 4.0363 3.3669 1.1580 16 8 3.8290 2.7970 2.2148 17 6 4.3340 4.7485 1.1466 18 6 4.2915 5.4618 2.3013 19 6 4.5901 6.8450 2.2900 20 6 4.9384 7.5930 1.1834 21 6 5.1422 8.9049 1.6367 22 6 4.9167 8.9074 2.9694 23 6 5.0214 10.1096 3.8721 24 1 5.6907 10.8984 3.5289 25 6 4.9253 9.8710 5.3804 26 6 3.7641 10.5320 4.6348 27 1 2.8611 9.9406 4.4834 28 6 3.5426 12.0294 4.8575 29 8 4.5906 7.6673 3.3600 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9564 0.7805 -0.8892 34 1 3.9557 0.7809 0.8908 35 1 2.6203 1.4687 -3.2252 36 1 4.5953 5.2370 0.2195 37 1 4.0298 4.9733 3.2284 38 1 5.0352 7.2379 0.1681 39 1 5.4270 9.7543 1.0334 40 1 5.5314 10.5030 6.0294 41 1 4.7868 8.8445 5.7197 42 1 3.4780 12.5344 3.8938 43 1 4.3764 12.4392 5.4274 44 1 2.6156 12.1812 5.4105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120622913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:20 Heat of formation + Delta-G solvation = -65.917099 kcal Electronic energy + Delta-G solvation = -27957.819854 eV Core-core repulsion = 23843.526468 eV Total energy + Delta-G solvation = -4114.293387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.60015 -41.45627 -40.33871 -38.70562 -37.44150 -36.63702 -35.37271 -33.78244 -33.56698 -31.05552 -30.10572 -28.74928 -27.88299 -26.86362 -25.28922 -23.02608 -22.89259 -21.90499 -21.56984 -21.11625 -20.62900 -18.82194 -18.62135 -18.44185 -17.66260 -17.33293 -17.14811 -17.03168 -16.42873 -16.27292 -15.78875 -15.42009 -15.36887 -14.75474 -14.56031 -14.39128 -14.16917 -14.12192 -13.92746 -13.83135 -13.40225 -13.13786 -13.11301 -12.99742 -12.83696 -12.79152 -12.57354 -12.39624 -12.30590 -11.98690 -11.82776 -11.61968 -11.57875 -11.40173 -11.04113 -11.01303 -10.67084 -10.57580 -9.94869 -8.75238 -8.43346 -6.03174 -0.50944 1.04159 1.46047 1.48092 1.61185 1.65388 1.72498 1.76820 1.99760 2.29532 2.59236 2.84546 2.95044 3.16830 3.42286 3.77327 3.85867 3.87448 4.02953 4.10438 4.22950 4.33026 4.34476 4.38664 4.39282 4.40423 4.55712 4.68198 4.69307 4.77905 4.82499 4.87863 4.90072 4.96165 5.02263 5.10573 5.17176 5.20769 5.35843 5.40702 5.42348 5.53645 5.57250 5.67034 6.11544 6.27070 6.98083 7.16355 7.37122 7.79738 8.61863 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002757 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.538689 B =10155.162391 C =11378.813092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.544 6.544 5 C 0.149 3.851 6 N -0.423 5.423 7 C -0.346 4.346 8 H 0.121 0.879 9 C -0.004 4.004 10 N -0.898 5.898 11 Si 1.004 2.996 12 H -0.250 1.250 13 H -0.272 1.272 14 H -0.288 1.288 15 C 0.477 3.523 16 O -0.644 6.644 17 C -0.155 4.155 18 C -0.030 4.030 19 C -0.017 4.017 20 C -0.171 4.171 21 C -0.205 4.205 22 C 0.022 3.978 23 C -0.087 4.087 24 H 0.164 0.836 25 C -0.165 4.165 26 C -0.139 4.139 27 H 0.087 0.913 28 C -0.118 4.118 29 O -0.182 6.182 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.276 0.724 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 13.761 5.622 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.334 3.666 4 O -0.432 6.432 5 C 0.024 3.976 6 N -0.139 5.139 7 C -0.472 4.472 8 H 0.138 0.862 9 C -0.206 4.206 10 N -0.536 5.536 11 Si 0.827 3.173 12 H -0.173 1.173 13 H -0.198 1.198 14 H -0.214 1.214 15 C 0.272 3.728 16 O -0.536 6.536 17 C -0.175 4.175 18 C -0.051 4.051 19 C -0.065 4.065 20 C -0.191 4.191 21 C -0.224 4.224 22 C -0.029 4.029 23 C -0.105 4.105 24 H 0.181 0.819 25 C -0.202 4.202 26 C -0.157 4.157 27 H 0.106 0.894 28 C -0.175 4.175 29 O -0.079 6.079 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.183 0.817 39 H 0.199 0.801 40 H 0.147 0.853 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.064 13.512 6.222 15.188 hybrid contribution -0.505 -0.374 -1.089 1.257 sum 2.560 13.138 5.134 14.336 Atomic orbital electron populations 1.23317 0.76125 1.04991 1.01190 1.86424 1.24140 1.33556 1.84935 1.23988 0.92534 0.80774 0.69278 1.90484 1.67439 1.37796 1.47523 1.20634 0.87194 0.85614 1.04178 1.43522 1.54896 1.08518 1.06933 1.20235 1.29719 1.14571 0.82720 0.86193 1.26316 0.94447 0.96541 1.03280 1.69778 1.28058 1.26870 1.28906 0.84691 0.77924 0.78646 0.76046 1.17317 1.19753 1.21396 1.17245 0.83308 0.88594 0.83663 1.90647 1.59147 1.72007 1.31778 1.21863 1.02994 0.93777 0.98897 1.19912 0.97411 0.88986 0.98825 1.19679 1.10136 0.91112 0.85593 1.22626 1.03033 0.93872 0.99519 1.21719 1.08299 0.98408 0.93971 1.22338 1.02032 0.83575 0.94942 1.20902 1.04289 0.93383 0.91918 0.81875 1.23271 1.01868 1.02384 0.92658 1.22570 0.92033 0.98842 1.02255 0.89446 1.21391 1.02982 0.90512 1.02593 1.83966 1.69123 1.18832 1.35997 0.93202 0.93523 0.84589 0.84857 0.89493 0.91386 0.83820 0.86284 0.81733 0.80056 0.85276 0.90025 0.91235 0.90733 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 10.56 113.37 1.20 2.48 16 2 O -0.37 -16.39 10.57 -51.39 -0.54 -16.93 16 3 C 0.49 25.25 6.08 71.24 0.43 25.69 16 4 O -0.54 -31.52 15.80 21.98 0.35 -31.18 16 5 C 0.15 7.46 5.16 85.63 0.44 7.90 16 6 N -0.42 -22.04 2.18 -649.92 -1.42 -23.46 16 7 C -0.35 -17.09 8.96 84.13 0.75 -16.34 16 8 H 0.12 5.41 6.14 -2.91 -0.02 5.39 16 9 C 0.00 -0.19 5.18 84.97 0.44 0.25 16 10 N -0.90 -45.73 8.82 21.69 0.19 -45.54 16 11 Si 1.00 37.86 29.56 68.60 2.03 39.89 16 12 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 13 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 14 H -0.29 -11.19 7.11 99.48 0.71 -10.48 16 15 C 0.48 24.91 7.12 85.00 0.61 25.52 16 16 O -0.64 -36.58 15.79 -4.82 -0.08 -36.66 16 17 C -0.16 -6.89 8.60 22.46 0.19 -6.70 16 18 C -0.03 -1.21 9.51 22.51 0.21 -1.00 16 19 C -0.02 -0.59 7.03 23.03 0.16 -0.43 16 20 C -0.17 -5.22 10.22 22.72 0.23 -4.99 16 21 C -0.21 -5.12 10.76 22.06 0.24 -4.89 16 22 C 0.02 0.57 6.79 24.98 0.17 0.74 16 23 C -0.09 -1.54 5.95 -11.54 -0.07 -1.61 16 24 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 25 C -0.17 -2.72 9.81 30.60 0.30 -2.42 16 26 C -0.14 -2.28 6.11 -10.79 -0.07 -2.35 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 C -0.12 -1.24 10.19 71.98 0.73 -0.51 16 29 O -0.18 -6.02 10.35 -6.39 -0.07 -6.09 16 30 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.14 3.29 8.14 -2.38 -0.02 3.27 16 33 H 0.13 6.54 6.27 -2.39 -0.01 6.53 16 34 H 0.09 4.14 7.57 -2.39 -0.02 4.12 16 35 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 36 H 0.14 5.82 4.86 -2.91 -0.01 5.81 16 37 H 0.12 5.14 7.47 -2.91 -0.02 5.12 16 38 H 0.17 4.61 7.15 -2.91 -0.02 4.59 16 39 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.13 1.42 8.05 -2.39 -0.02 1.40 16 41 H 0.08 1.69 7.94 -2.39 -0.02 1.67 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.57 7.90 -2.39 -0.02 0.55 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.25 379.08 7.47 -63.79 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 1.03 Total: 34.81 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 5.98 Total: 21.36 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.23 Total: -69.00 kcal Atomic # 8 Polarization: -90.52 SS G_CDS: -0.34 Total: -90.85 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -71.25 7.47 -63.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120622913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.130 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds