Wall clock time and date at job start Tue Mar 31 2020 17:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00322 * 2 1 4 4 O 1.20830 * 119.99582 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00548 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47269 * 179.97438 * 5 3 2 7 7 C 1.36747 * 120.00016 * 264.09768 * 6 5 3 8 8 H 1.07998 * 120.00096 * 203.25438 * 7 6 5 9 9 C 1.39075 * 120.00029 * 23.24964 * 7 6 5 10 10 N 1.31356 * 119.99557 * 7.94981 * 9 7 6 11 11 Si 1.86794 * 120.00023 * 187.94394 * 9 7 6 12 12 H 1.48505 * 109.46891 * 90.00576 * 11 9 7 13 13 H 1.48502 * 109.47361 * 209.99996 * 11 9 7 14 14 H 1.48497 * 109.47426 * 330.00244 * 11 9 7 15 15 C 1.34779 * 120.00138 * 84.09555 * 6 5 3 16 16 O 1.21836 * 120.00094 * 5.42849 * 15 6 5 17 17 C 1.41341 * 119.99938 * 185.42368 * 15 6 5 18 18 C 1.35787 * 119.99806 * 174.98158 * 17 15 6 19 19 C 1.41520 * 119.99681 * 180.02562 * 18 17 15 20 20 C 1.38032 * 126.11085 * 0.04463 * 19 18 17 21 21 C 1.40297 * 106.52506 * 179.71298 * 20 19 18 22 22 C 1.35182 * 107.20911 * 0.40360 * 21 20 19 23 23 C 1.50697 * 125.47470 * 179.84568 * 22 21 20 24 24 H 1.08998 * 115.55123 * 334.13991 * 23 22 21 25 25 C 1.52999 * 117.51982 * 188.43626 * 23 22 21 26 26 C 1.53001 * 60.00193 * 252.51951 * 25 23 22 27 27 H 1.08996 * 117.49684 * 252.50394 * 26 25 23 28 28 C 1.52995 * 117.51356 * 107.47767 * 26 25 23 29 29 O 1.34038 * 109.04504 * 359.58577 * 22 21 20 30 30 H 1.08998 * 109.47302 * 60.00324 * 1 2 3 31 31 H 1.09007 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47039 * 299.99904 * 1 2 3 33 33 H 1.09000 * 109.46811 * 59.99468 * 5 3 2 34 34 H 1.09002 * 109.46861 * 300.00094 * 5 3 2 35 35 H 0.97002 * 119.99600 * 179.97438 * 10 9 7 36 36 H 1.08001 * 120.00266 * 354.98964 * 17 15 6 37 37 H 1.07996 * 119.99995 * 359.97438 * 18 17 15 38 38 H 1.07997 * 126.73914 * 359.97438 * 20 19 18 39 39 H 1.08001 * 126.39444 * 180.25758 * 21 20 19 40 40 H 1.09003 * 117.49676 * 0.02562 * 25 23 22 41 41 H 1.09005 * 117.49928 * 145.02542 * 25 23 22 42 42 H 1.09000 * 109.47746 * 351.37226 * 28 26 25 43 43 H 1.09007 * 109.47350 * 111.37290 * 28 26 25 44 44 H 1.08996 * 109.47358 * 231.37138 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2919 3.3005 -1.1793 8 1 4.9354 4.1679 -1.1796 9 6 3.7787 2.8150 -2.3773 10 7 2.8756 1.8613 -2.3663 11 14 4.3737 3.5194 -4.0019 12 1 5.5472 2.7435 -4.4775 13 1 3.2839 3.4345 -5.0070 14 1 4.7630 4.9398 -3.8127 15 6 4.0580 3.3603 1.1597 16 8 3.8783 2.7829 2.2174 17 6 4.3468 4.7438 1.1501 18 6 4.3234 5.4504 2.3094 19 6 4.6120 6.8358 2.2996 20 6 4.9305 7.5926 1.1901 21 6 5.1292 8.9046 1.6455 22 6 4.9381 8.8966 2.9838 23 6 5.0533 10.0945 3.8908 24 1 5.7074 10.8913 3.5366 25 6 4.9944 9.8472 5.3995 26 6 3.8104 10.5016 4.6849 27 1 3.6468 11.5660 4.8531 28 6 2.5458 9.6611 4.4973 29 8 4.6241 7.6532 3.3733 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9557 0.7808 -0.8908 34 1 3.9564 0.7805 0.8892 35 1 2.5174 1.5229 -3.2018 36 1 4.5859 5.2391 0.2206 37 1 4.0838 4.9552 3.2388 38 1 5.0072 7.2441 0.1707 39 1 5.3888 9.7606 1.0403 40 1 4.8728 8.8177 5.7363 41 1 5.6100 10.4811 6.0379 42 1 2.7482 8.6302 4.7876 43 1 1.7464 10.0635 5.1197 44 1 2.2416 9.6909 3.4511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120623028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:24 Heat of formation + Delta-G solvation = -48.699907 kcal Electronic energy + Delta-G solvation = -28280.257230 eV Core-core repulsion = 24166.710437 eV Total energy + Delta-G solvation = -4113.546793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36225 -39.56422 -38.49003 -37.88237 -35.59965 -34.70266 -33.79618 -32.49546 -31.70797 -29.40785 -28.73907 -27.77741 -26.34874 -25.18014 -23.85949 -21.89037 -21.73371 -20.75759 -19.93273 -19.61994 -18.96349 -17.11180 -16.84326 -16.57603 -16.27326 -15.88926 -15.54683 -15.47815 -15.20862 -14.68244 -14.42707 -14.15793 -13.56368 -13.30109 -13.18385 -12.94198 -12.83652 -12.64921 -12.53471 -12.42153 -12.37154 -11.87635 -11.69991 -11.60301 -11.38589 -11.35780 -11.21000 -10.83990 -10.78504 -10.62439 -10.41618 -10.23605 -10.05236 -9.83992 -9.64500 -9.37898 -9.10570 -8.73431 -8.05259 -7.38999 -6.63675 -4.14628 0.97810 2.31009 2.96553 3.00912 3.10301 3.13392 3.15426 3.61595 3.66765 3.70506 3.97821 4.35246 4.37859 4.50109 4.66245 4.75084 4.98330 5.10195 5.12380 5.19323 5.33037 5.49973 5.59105 5.68558 5.69120 5.77277 5.77814 5.80651 5.89554 5.93332 5.96276 6.06788 6.12438 6.18099 6.27415 6.36871 6.46853 6.61152 6.68338 6.76411 7.02172 7.17187 7.39122 7.43253 7.52952 8.11013 8.82807 9.08850 9.23011 9.66858 10.41824 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.002985 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.578661 B = 9377.041998 C =10626.419651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.489 3.511 4 O -0.504 6.504 5 C 0.154 3.846 6 N -0.411 5.411 7 C -0.327 4.327 8 H 0.107 0.893 9 C 0.038 3.962 10 N -0.868 5.868 11 Si 0.936 3.064 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.486 3.514 16 O -0.609 6.609 17 C -0.118 4.118 18 C -0.067 4.067 19 C 0.033 3.967 20 C -0.193 4.193 21 C -0.199 4.199 22 C 0.014 3.986 23 C -0.080 4.080 24 H 0.132 0.868 25 C -0.169 4.169 26 C -0.139 4.139 27 H 0.111 0.889 28 C -0.127 4.127 29 O -0.166 6.166 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.277 0.723 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 9.995 5.916 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.331 3.669 4 O -0.389 6.389 5 C 0.028 3.972 6 N -0.127 5.127 7 C -0.454 4.454 8 H 0.124 0.876 9 C -0.167 4.167 10 N -0.506 5.506 11 Si 0.762 3.238 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.192 1.192 15 C 0.280 3.720 16 O -0.498 6.498 17 C -0.138 4.138 18 C -0.088 4.088 19 C -0.017 4.017 20 C -0.212 4.212 21 C -0.218 4.218 22 C -0.037 4.037 23 C -0.098 4.098 24 H 0.150 0.850 25 C -0.205 4.205 26 C -0.157 4.157 27 H 0.129 0.871 28 C -0.184 4.184 29 O -0.062 6.062 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.812 9.762 6.515 11.875 hybrid contribution -0.113 0.480 -1.403 1.487 sum 1.699 10.241 5.112 11.572 Atomic orbital electron populations 1.22933 0.78700 1.01819 1.01621 1.86448 1.21650 1.35382 1.85695 1.23806 0.92159 0.80564 0.70417 1.90519 1.66528 1.36398 1.45416 1.20509 0.87352 0.85425 1.03876 1.43332 1.54962 1.08158 1.06276 1.19766 1.28458 1.14323 0.82898 0.87592 1.25412 0.94459 0.96471 1.00397 1.69633 1.25334 1.26878 1.28727 0.85775 0.78290 0.79478 0.80297 1.19961 1.20699 1.19159 1.16726 0.83865 0.87407 0.84028 1.90700 1.57765 1.70643 1.30680 1.22108 0.98674 0.95302 0.97750 1.19970 1.00926 0.87896 1.00033 1.19900 1.06060 0.91477 0.84247 1.22259 1.06453 0.92972 0.99546 1.21309 1.08505 0.98325 0.93657 1.21308 1.05154 0.83635 0.93572 1.20577 1.03118 0.94450 0.91615 0.85028 1.23202 1.01430 1.02801 0.93111 1.22504 0.90177 1.00164 1.02905 0.87097 1.21393 0.95346 0.99561 1.02092 1.83984 1.68812 1.17714 1.35701 0.92664 0.89572 0.93147 0.85426 0.89858 0.91243 0.85174 0.84814 0.82860 0.83610 0.87983 0.88123 0.91881 0.92053 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.37 -8.07 10.56 -39.25 -0.41 -8.49 16 3 C 0.49 12.13 6.00 36.01 0.22 12.35 16 4 O -0.50 -14.02 15.69 -18.75 -0.29 -14.31 16 5 C 0.15 3.68 5.18 -5.20 -0.03 3.65 16 6 N -0.41 -10.28 2.16 -119.44 -0.26 -10.54 16 7 C -0.33 -7.93 8.93 -15.05 -0.13 -8.07 16 8 H 0.11 2.37 6.18 -52.49 -0.32 2.05 16 9 C 0.04 0.91 5.15 -17.44 -0.09 0.82 16 10 N -0.87 -21.72 8.72 55.50 0.48 -21.23 16 11 Si 0.94 18.61 29.56 -169.99 -5.02 13.59 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 15 C 0.49 12.09 7.17 -15.08 -0.11 11.98 16 16 O -0.61 -16.35 15.77 5.07 0.08 -16.27 16 17 C -0.12 -2.51 8.60 -39.28 -0.34 -2.85 16 18 C -0.07 -1.30 9.51 -39.21 -0.37 -1.68 16 19 C 0.03 0.57 7.03 -38.41 -0.27 0.30 16 20 C -0.19 -3.07 10.21 -38.88 -0.40 -3.47 16 21 C -0.20 -2.75 10.76 -39.90 -0.43 -3.18 16 22 C 0.01 0.20 5.89 -35.40 -0.21 -0.01 16 23 C -0.08 -0.82 6.23 -91.77 -0.57 -1.39 16 24 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.17 -1.57 9.81 -26.73 -0.26 -1.84 16 26 C -0.14 -1.29 6.41 -90.62 -0.58 -1.88 16 27 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 28 C -0.13 -1.36 9.15 37.16 0.34 -1.02 16 29 O -0.17 -2.70 9.59 4.61 0.04 -2.66 16 30 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 33 H 0.13 2.99 6.43 -51.93 -0.33 2.66 16 34 H 0.08 1.88 7.53 -51.93 -0.39 1.48 16 35 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.13 2.59 4.87 -52.49 -0.26 2.33 16 37 H 0.13 2.70 7.47 -52.49 -0.39 2.31 16 38 H 0.15 2.29 7.15 -52.49 -0.38 1.92 16 39 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.10 1.10 7.86 -51.93 -0.41 0.69 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.78 7.25 -51.93 -0.38 0.40 16 43 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -31.28 376.19 -7.68 -38.96 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.80 Total: 9.72 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.17 Total: 5.56 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.23 Total: -31.77 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.58 Total: -41.73 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.28 -7.68 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120623028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.738 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds