Wall clock time and date at job start Tue Mar 31 2020 17:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00322 * 2 1 4 4 O 1.20830 * 119.99582 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00548 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47269 * 179.97438 * 5 3 2 7 7 C 1.36747 * 120.00016 * 264.09768 * 6 5 3 8 8 H 1.07998 * 120.00096 * 203.25438 * 7 6 5 9 9 C 1.39075 * 120.00029 * 23.24964 * 7 6 5 10 10 N 1.31356 * 119.99557 * 7.94981 * 9 7 6 11 11 Si 1.86794 * 120.00023 * 187.94394 * 9 7 6 12 12 H 1.48505 * 109.46891 * 90.00576 * 11 9 7 13 13 H 1.48502 * 109.47361 * 209.99996 * 11 9 7 14 14 H 1.48497 * 109.47426 * 330.00244 * 11 9 7 15 15 C 1.34779 * 120.00138 * 84.09555 * 6 5 3 16 16 O 1.21836 * 120.00094 * 5.42849 * 15 6 5 17 17 C 1.41341 * 119.99938 * 185.42368 * 15 6 5 18 18 C 1.35787 * 119.99806 * 174.98158 * 17 15 6 19 19 C 1.41520 * 119.99681 * 180.02562 * 18 17 15 20 20 C 1.38032 * 126.11085 * 0.04463 * 19 18 17 21 21 C 1.40297 * 106.52506 * 179.71298 * 20 19 18 22 22 C 1.35182 * 107.20911 * 0.40360 * 21 20 19 23 23 C 1.50697 * 125.47470 * 179.84568 * 22 21 20 24 24 H 1.08998 * 115.55123 * 334.13991 * 23 22 21 25 25 C 1.52999 * 117.51982 * 188.43626 * 23 22 21 26 26 C 1.53001 * 60.00193 * 252.51951 * 25 23 22 27 27 H 1.08996 * 117.49684 * 252.50394 * 26 25 23 28 28 C 1.52995 * 117.51356 * 107.47767 * 26 25 23 29 29 O 1.34038 * 109.04504 * 359.58577 * 22 21 20 30 30 H 1.08998 * 109.47302 * 60.00324 * 1 2 3 31 31 H 1.09007 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47039 * 299.99904 * 1 2 3 33 33 H 1.09000 * 109.46811 * 59.99468 * 5 3 2 34 34 H 1.09002 * 109.46861 * 300.00094 * 5 3 2 35 35 H 0.97002 * 119.99600 * 179.97438 * 10 9 7 36 36 H 1.08001 * 120.00266 * 354.98964 * 17 15 6 37 37 H 1.07996 * 119.99995 * 359.97438 * 18 17 15 38 38 H 1.07997 * 126.73914 * 359.97438 * 20 19 18 39 39 H 1.08001 * 126.39444 * 180.25758 * 21 20 19 40 40 H 1.09003 * 117.49676 * 0.02562 * 25 23 22 41 41 H 1.09005 * 117.49928 * 145.02542 * 25 23 22 42 42 H 1.09000 * 109.47746 * 351.37226 * 28 26 25 43 43 H 1.09007 * 109.47350 * 111.37290 * 28 26 25 44 44 H 1.08996 * 109.47358 * 231.37138 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2919 3.3005 -1.1793 8 1 4.9354 4.1679 -1.1796 9 6 3.7787 2.8150 -2.3773 10 7 2.8756 1.8613 -2.3663 11 14 4.3737 3.5194 -4.0019 12 1 5.5472 2.7435 -4.4775 13 1 3.2839 3.4345 -5.0070 14 1 4.7630 4.9398 -3.8127 15 6 4.0580 3.3603 1.1597 16 8 3.8783 2.7829 2.2174 17 6 4.3468 4.7438 1.1501 18 6 4.3234 5.4504 2.3094 19 6 4.6120 6.8358 2.2996 20 6 4.9305 7.5926 1.1901 21 6 5.1292 8.9046 1.6455 22 6 4.9381 8.8966 2.9838 23 6 5.0533 10.0945 3.8908 24 1 5.7074 10.8913 3.5366 25 6 4.9944 9.8472 5.3995 26 6 3.8104 10.5016 4.6849 27 1 3.6468 11.5660 4.8531 28 6 2.5458 9.6611 4.4973 29 8 4.6241 7.6532 3.3733 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9557 0.7808 -0.8908 34 1 3.9564 0.7805 0.8892 35 1 2.5174 1.5229 -3.2018 36 1 4.5859 5.2391 0.2206 37 1 4.0838 4.9552 3.2388 38 1 5.0072 7.2441 0.1707 39 1 5.3888 9.7606 1.0403 40 1 4.8728 8.8177 5.7363 41 1 5.6100 10.4811 6.0379 42 1 2.7482 8.6302 4.7876 43 1 1.7464 10.0635 5.1197 44 1 2.2416 9.6909 3.4511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120623028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:23 Heat of formation + Delta-G solvation = -64.719702 kcal Electronic energy + Delta-G solvation = -28280.951901 eV Core-core repulsion = 24166.710437 eV Total energy + Delta-G solvation = -4114.241464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.58980 -41.43761 -40.32649 -38.70420 -37.42835 -36.60381 -35.33961 -33.75059 -33.56705 -30.94871 -29.92255 -29.03728 -27.91011 -26.90297 -25.29952 -23.00289 -22.96065 -22.05322 -21.46396 -20.85110 -20.61244 -18.75977 -18.60386 -18.40878 -17.38996 -17.31255 -17.25713 -16.91810 -16.53313 -16.24622 -16.09574 -15.59504 -15.36792 -14.61895 -14.48917 -14.24064 -14.18057 -14.10871 -13.95681 -13.81881 -13.40308 -13.35019 -13.11205 -12.97276 -12.80887 -12.75770 -12.56444 -12.38936 -12.30043 -12.05468 -11.78823 -11.59540 -11.54009 -11.38528 -11.00154 -10.99698 -10.66425 -10.57052 -9.93298 -8.73470 -8.43678 -6.03083 -0.49030 1.06792 1.47456 1.48258 1.59568 1.66750 1.75187 1.79622 2.01363 2.30183 2.59952 2.86797 2.95940 3.17022 3.47071 3.73177 3.83921 3.92278 4.04677 4.12903 4.23731 4.33751 4.35537 4.39703 4.41252 4.41966 4.56338 4.68637 4.72404 4.75944 4.81015 4.82545 4.87021 4.90967 5.01250 5.09036 5.13893 5.19807 5.35822 5.37525 5.44009 5.55746 5.58767 5.68486 6.14564 6.27135 6.98483 7.19371 7.37648 7.80237 8.62056 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.002985 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.578661 B = 9377.041998 C =10626.419651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.491 3.509 4 O -0.542 6.542 5 C 0.151 3.849 6 N -0.423 5.423 7 C -0.348 4.348 8 H 0.119 0.881 9 C -0.003 4.003 10 N -0.896 5.896 11 Si 1.004 2.996 12 H -0.265 1.265 13 H -0.289 1.289 14 H -0.256 1.256 15 C 0.477 3.523 16 O -0.644 6.644 17 C -0.156 4.156 18 C -0.028 4.028 19 C -0.018 4.018 20 C -0.171 4.171 21 C -0.209 4.209 22 C 0.030 3.970 23 C -0.093 4.093 24 H 0.166 0.834 25 C -0.166 4.166 26 C -0.130 4.130 27 H 0.143 0.857 28 C -0.131 4.131 29 O -0.178 6.178 30 H 0.046 0.954 31 H 0.135 0.865 32 H 0.049 0.951 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.276 0.724 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.163 0.837 39 H 0.180 0.820 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 13.082 5.684 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.291 6.291 3 C 0.335 3.665 4 O -0.430 6.430 5 C 0.026 3.974 6 N -0.138 5.138 7 C -0.475 4.475 8 H 0.137 0.863 9 C -0.205 4.205 10 N -0.534 5.534 11 Si 0.827 3.173 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.180 1.180 15 C 0.272 3.728 16 O -0.536 6.536 17 C -0.177 4.177 18 C -0.050 4.050 19 C -0.066 4.066 20 C -0.191 4.191 21 C -0.228 4.228 22 C -0.021 4.021 23 C -0.111 4.111 24 H 0.183 0.817 25 C -0.203 4.203 26 C -0.148 4.148 27 H 0.161 0.839 28 C -0.188 4.188 29 O -0.075 6.075 30 H 0.064 0.936 31 H 0.153 0.847 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.137 0.863 38 H 0.180 0.820 39 H 0.198 0.802 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.685 12.823 6.284 14.530 hybrid contribution -0.436 -0.320 -1.133 1.256 sum 2.249 12.504 5.150 13.709 Atomic orbital electron populations 1.23301 0.76173 1.04916 1.01158 1.86417 1.24096 1.33613 1.85013 1.23926 0.92475 0.80790 0.69353 1.90483 1.67375 1.37758 1.47425 1.20563 0.87282 0.85594 1.03987 1.43495 1.55184 1.08501 1.06654 1.20174 1.29233 1.15144 0.82937 0.86307 1.26310 0.94212 0.96573 1.03381 1.69737 1.26367 1.28051 1.29234 0.84744 0.77558 0.79335 0.75663 1.18995 1.21495 1.17985 1.17252 0.83273 0.88650 0.83582 1.90644 1.59551 1.71661 1.31711 1.21850 1.03142 0.93813 0.98856 1.19912 0.97267 0.89066 0.98760 1.19651 1.10359 0.91092 0.85515 1.22600 1.03254 0.93812 0.99422 1.21705 1.08771 0.98355 0.93931 1.22251 1.01649 0.83480 0.94720 1.20971 1.04781 0.93653 0.91650 0.81709 1.23273 1.01901 1.02319 0.92811 1.22615 0.88846 1.01464 1.01876 0.83905 1.21419 0.97128 0.98718 1.01575 1.83989 1.69076 1.18768 1.35649 0.93557 0.84661 0.93239 0.85333 0.89402 0.91421 0.83947 0.86318 0.81992 0.80234 0.90158 0.85217 0.94350 0.90290 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.37 -16.41 10.56 -51.37 -0.54 -16.95 16 3 C 0.49 25.25 6.00 71.24 0.43 25.68 16 4 O -0.54 -31.39 15.69 21.95 0.34 -31.04 16 5 C 0.15 7.55 5.18 85.63 0.44 7.99 16 6 N -0.42 -22.02 2.16 -649.95 -1.41 -23.43 16 7 C -0.35 -17.26 8.93 84.13 0.75 -16.50 16 8 H 0.12 5.38 6.18 -2.91 -0.02 5.36 16 9 C 0.00 -0.12 5.15 84.96 0.44 0.32 16 10 N -0.90 -45.78 8.72 21.69 0.19 -45.59 16 11 Si 1.00 37.97 29.56 68.60 2.03 40.00 16 12 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 13 H -0.29 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 15 C 0.48 24.93 7.17 85.00 0.61 25.54 16 16 O -0.64 -36.49 15.77 -4.78 -0.08 -36.57 16 17 C -0.16 -6.96 8.60 22.46 0.19 -6.76 16 18 C -0.03 -1.16 9.51 22.51 0.21 -0.94 16 19 C -0.02 -0.62 7.03 23.03 0.16 -0.46 16 20 C -0.17 -5.23 10.21 22.72 0.23 -5.00 16 21 C -0.21 -5.19 10.76 22.07 0.24 -4.95 16 22 C 0.03 0.76 5.89 24.98 0.15 0.91 16 23 C -0.09 -1.57 6.23 -11.54 -0.07 -1.64 16 24 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 25 C -0.17 -2.61 9.81 30.59 0.30 -2.31 16 26 C -0.13 -1.97 6.41 -10.79 -0.07 -2.04 16 27 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 28 C -0.13 -2.63 9.15 71.98 0.66 -1.97 16 29 O -0.18 -5.75 9.59 -6.41 -0.06 -5.82 16 30 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.14 3.29 8.14 -2.38 -0.02 3.27 16 32 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.13 6.28 6.43 -2.39 -0.02 6.27 16 34 H 0.09 4.18 7.53 -2.39 -0.02 4.16 16 35 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 36 H 0.14 5.81 4.87 -2.91 -0.01 5.80 16 37 H 0.12 5.11 7.47 -2.91 -0.02 5.09 16 38 H 0.16 4.60 7.15 -2.91 -0.02 4.58 16 39 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.08 1.64 7.86 -2.39 -0.02 1.62 16 41 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.04 0.94 7.25 -2.39 -0.02 0.93 16 43 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -71.24 376.19 7.37 -63.87 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 1.03 Total: 35.16 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 5.87 Total: 20.38 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.22 Total: -69.02 kcal Atomic # 8 Polarization: -90.04 SS G_CDS: -0.34 Total: -90.38 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -71.24 7.37 -63.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120623028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.852 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds