Wall clock time and date at job start Tue Mar 31 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47453 * 2 1 4 4 C 1.46760 * 124.35117 * 89.99549 * 3 2 1 5 5 C 1.54477 * 105.55130 * 197.08058 * 4 3 2 6 6 H 1.09000 * 110.97316 * 92.65957 * 5 4 3 7 7 C 1.52998 * 110.97079 * 216.38990 * 5 4 3 8 8 O 1.45207 * 109.47261 * 185.00078 * 7 5 4 9 9 C 1.34757 * 117.00176 * 179.97438 * 8 7 5 10 10 O 1.21518 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.47393 * 120.00175 * 179.97438 * 9 8 7 12 12 C 1.39730 * 120.20078 * 0.02562 * 11 9 8 13 13 C 1.37803 * 119.91257 * 179.97438 * 12 11 9 14 14 C 1.38592 * 120.33031 * 0.02562 * 13 12 11 15 15 C 1.38014 * 120.41715 * 359.97438 * 14 13 12 16 16 C 1.38836 * 120.07509 * 359.76608 * 15 14 13 17 17 O 1.35510 * 120.16444 * 180.27437 * 16 15 14 18 18 C 1.34802 * 117.00249 * 354.40145 * 17 16 15 19 19 H 1.08008 * 120.00168 * 5.06078 * 18 17 16 20 20 C 1.38707 * 120.00259 * 185.06650 * 18 17 16 21 21 N 1.31513 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00284 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47187 * 89.99577 * 22 20 18 24 24 H 1.48497 * 109.47272 * 209.99931 * 22 20 18 25 25 H 1.48507 * 109.46818 * 329.99835 * 22 20 18 26 26 C 1.54633 * 101.76427 * 334.53750 * 5 4 3 27 27 C 1.34619 * 124.46733 * 270.02183 * 3 2 1 28 28 O 1.21286 * 124.90608 * 359.55588 * 27 3 2 29 29 H 1.08990 * 109.47384 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47053 * 300.00767 * 1 2 3 31 31 H 1.09009 * 109.46771 * 60.00219 * 1 2 3 32 32 H 1.08997 * 109.47259 * 239.99589 * 2 1 3 33 33 H 1.09009 * 109.46771 * 119.99781 * 2 1 3 34 34 H 1.08997 * 110.24765 * 78.03222 * 4 3 2 35 35 H 1.09007 * 110.24570 * 316.12287 * 4 3 2 36 36 H 1.09004 * 109.46837 * 304.99575 * 7 5 4 37 37 H 1.08996 * 109.47692 * 64.99630 * 7 5 4 38 38 H 1.07995 * 120.04576 * 359.97438 * 12 11 9 39 39 H 1.07996 * 119.83445 * 180.02562 * 13 12 11 40 40 H 1.07999 * 119.79050 * 180.02562 * 14 13 12 41 41 H 1.08005 * 119.96565 * 180.02562 * 15 14 13 42 42 H 0.96997 * 119.99838 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.48636 * 143.47017 * 26 5 4 44 44 H 1.08991 * 110.49143 * 266.12144 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 2.3518 3.6353 0.7508 6 1 1.3765 4.1125 0.8473 7 6 3.4171 4.4110 1.5281 8 8 3.3632 5.8134 1.1552 9 6 4.2426 6.6401 1.7545 10 8 5.0327 6.2011 2.5668 11 6 4.2463 8.0766 1.4247 12 6 3.3394 8.5859 0.4917 13 6 3.3477 9.9301 0.1882 14 6 4.2522 10.7809 0.8037 15 6 5.1539 10.2925 1.7273 16 6 5.1570 8.9421 2.0498 17 8 6.0379 8.4615 2.9605 18 6 6.9618 9.3226 3.4319 19 1 6.9263 10.3632 3.1450 20 6 7.9581 8.8721 4.2853 21 7 8.0011 7.6051 4.6350 22 14 9.2388 10.0652 4.9380 23 1 8.7594 10.6576 6.2125 24 1 10.5132 9.3414 5.1770 25 1 9.4618 11.1450 3.9432 26 6 2.7500 3.4854 -0.7358 27 6 2.2720 2.0996 -1.1099 28 8 2.1364 1.6944 -2.2450 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.2501 1.8641 1.6428 35 1 1.4941 2.0252 1.9390 36 1 3.2307 4.3121 2.5975 37 1 4.4029 4.0101 1.2925 38 1 2.6329 7.9270 0.0090 39 1 2.6459 10.3224 -0.5328 40 1 4.2508 11.8330 0.5596 41 1 5.8553 10.9622 2.2028 42 1 8.6977 7.2901 5.2321 43 1 2.2481 4.2388 -1.3430 44 1 3.8313 3.5598 -0.8506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124429892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:42 Heat of formation + Delta-G solvation = -117.997105 kcal Electronic energy + Delta-G solvation = -27933.153708 eV Core-core repulsion = 23816.601963 eV Total energy + Delta-G solvation = -4116.551745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71755 -39.83128 -38.70719 -36.85147 -36.45746 -35.69642 -34.26701 -32.45475 -30.95156 -30.25401 -29.01763 -28.31397 -26.16792 -25.45817 -23.61131 -23.19361 -21.66418 -21.01668 -20.32807 -19.54416 -18.11852 -17.56783 -17.25629 -16.77035 -16.44437 -15.82370 -15.68151 -15.34547 -14.70938 -14.48111 -14.24348 -14.22257 -13.99010 -13.97239 -13.78084 -13.53792 -13.48328 -12.84311 -12.71643 -12.62649 -12.35968 -12.18344 -12.06374 -11.79861 -11.57618 -11.44165 -11.35416 -11.18954 -11.08539 -10.96772 -10.82373 -10.52375 -10.21330 -9.87569 -9.80933 -9.31145 -9.00116 -8.97334 -8.37249 -7.42729 -6.55644 -4.15263 1.55338 2.26414 2.41242 2.66117 3.06067 3.07389 3.12084 3.15326 3.39896 3.85240 4.10628 4.22124 4.49999 4.52774 4.65931 4.77245 4.86816 4.96914 5.04264 5.08972 5.12195 5.17290 5.28572 5.37488 5.45152 5.50185 5.50772 5.53563 5.57052 5.68679 5.77225 5.83147 5.87974 6.04933 6.08598 6.29234 6.52201 6.60215 6.83756 6.85526 6.93030 7.05266 7.18526 7.25339 7.61245 7.82976 7.97767 8.64892 8.84774 9.53351 10.58067 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002569 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.919668 B =10898.426078 C =12236.842441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.110 3.890 5 C -0.098 4.098 6 H 0.104 0.896 7 C 0.080 3.920 8 O -0.364 6.364 9 C 0.499 3.501 10 O -0.476 6.476 11 C -0.217 4.217 12 C -0.015 4.015 13 C -0.235 4.235 14 C -0.043 4.043 15 C -0.239 4.239 16 C 0.191 3.809 17 O -0.125 6.125 18 C -0.403 4.403 19 H 0.096 0.904 20 C 0.045 3.955 21 N -0.832 5.832 22 Si 0.943 3.057 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 C -0.148 4.148 27 C 0.519 3.481 28 O -0.534 6.534 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.273 0.727 43 H 0.108 0.892 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 -7.888 -5.626 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.357 5.357 4 C -0.013 4.013 5 C -0.117 4.117 6 H 0.122 0.878 7 C 0.005 3.995 8 O -0.283 6.283 9 C 0.344 3.656 10 O -0.362 6.362 11 C -0.220 4.220 12 C -0.034 4.034 13 C -0.254 4.254 14 C -0.062 4.062 15 C -0.258 4.258 16 C 0.131 3.869 17 O -0.023 6.023 18 C -0.478 4.478 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.463 5.463 22 Si 0.767 3.233 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.188 4.188 27 C 0.307 3.693 28 O -0.411 6.411 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.569 -8.782 -5.672 15.593 hybrid contribution 0.659 0.570 0.528 1.019 sum -10.910 -8.212 -5.144 14.592 Atomic orbital electron populations 1.22164 0.95749 1.02334 1.02560 1.21336 0.94374 0.81092 1.03194 1.48391 1.66226 1.13874 1.07257 1.22007 1.02375 0.89545 0.87423 1.22105 1.00908 0.94169 0.94472 0.87805 1.22739 0.98483 0.79086 0.99217 1.86492 1.57545 1.19104 1.65205 1.21085 0.78305 0.87004 0.79175 1.91012 1.37132 1.76745 1.31342 1.18000 1.06451 0.88583 1.08922 1.20958 0.94416 0.95180 0.92805 1.20551 1.04390 0.93707 1.06705 1.20973 0.92989 0.98674 0.93538 1.21116 1.04729 0.95113 1.04823 1.19234 0.89189 0.91113 0.87355 1.84134 1.35386 1.37977 1.44792 1.21535 1.06017 0.91650 1.28629 0.88626 1.25415 0.97655 0.96956 0.96281 1.70109 1.32051 1.13789 1.30371 0.85693 0.79083 0.79172 0.79395 1.19654 1.20060 1.18956 1.22452 1.04292 0.95204 0.96890 1.21094 0.76055 0.87891 0.84256 1.90713 1.53459 1.75766 1.21114 0.91422 0.92326 0.92211 0.90015 0.90256 0.90359 0.89733 0.90739 0.90941 0.85733 0.86967 0.86957 0.84827 0.91706 0.87346 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.12 0.96 6.66 -4.04 -0.03 0.93 16 3 N -0.62 -6.01 2.94 -172.35 -0.51 -6.51 16 4 C 0.11 0.87 6.91 -3.13 -0.02 0.85 16 5 C -0.10 -0.93 3.42 -88.99 -0.30 -1.23 16 6 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 7 C 0.08 1.03 4.77 37.16 0.18 1.21 16 8 O -0.36 -6.02 9.44 -40.65 -0.38 -6.40 16 9 C 0.50 10.68 7.89 34.46 0.27 10.95 16 10 O -0.48 -12.22 14.96 -26.60 -0.40 -12.62 16 11 C -0.22 -4.63 5.89 -104.83 -0.62 -5.25 16 12 C -0.02 -0.26 9.61 -39.18 -0.38 -0.64 16 13 C -0.23 -3.77 10.02 -39.61 -0.40 -4.17 16 14 C -0.04 -0.73 10.03 -39.53 -0.40 -1.13 16 15 C -0.24 -4.93 9.16 -39.44 -0.36 -5.29 16 16 C 0.19 4.57 6.66 -38.58 -0.26 4.32 16 17 O -0.12 -3.54 7.84 -20.99 -0.16 -3.71 16 18 C -0.40 -10.98 9.49 30.91 0.29 -10.69 16 19 H 0.10 2.35 5.21 -52.48 -0.27 2.08 16 20 C 0.05 1.21 5.49 -17.51 -0.10 1.12 16 21 N -0.83 -24.18 13.67 55.48 0.76 -23.43 16 22 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.15 -1.58 6.39 -26.74 -0.17 -1.75 16 27 C 0.52 6.39 8.03 -10.77 -0.09 6.31 16 28 O -0.53 -8.57 17.60 5.55 0.10 -8.48 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 33 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 35 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.98 7.93 -51.93 -0.41 0.56 16 38 H 0.12 1.82 7.61 -52.49 -0.40 1.42 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.11 1.17 7.76 -51.93 -0.40 0.77 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -34.82 377.49 -7.89 -42.71 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.97 Total: 3.25 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.99 Total: -5.28 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.25 Total: -29.94 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.85 Total: -31.21 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.82 -7.89 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124429892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.288 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds