Wall clock time and date at job start Tue Mar 31 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47453 * 2 1 4 4 C 1.46760 * 124.35117 * 89.99549 * 3 2 1 5 5 C 1.54477 * 105.55130 * 197.08058 * 4 3 2 6 6 H 1.09000 * 110.97316 * 92.65957 * 5 4 3 7 7 C 1.52998 * 110.97079 * 216.38990 * 5 4 3 8 8 O 1.45207 * 109.47261 * 185.00078 * 7 5 4 9 9 C 1.34757 * 117.00176 * 179.97438 * 8 7 5 10 10 O 1.21518 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.47393 * 120.00175 * 179.97438 * 9 8 7 12 12 C 1.39730 * 120.20078 * 0.02562 * 11 9 8 13 13 C 1.37803 * 119.91257 * 179.97438 * 12 11 9 14 14 C 1.38592 * 120.33031 * 0.02562 * 13 12 11 15 15 C 1.38014 * 120.41715 * 359.97438 * 14 13 12 16 16 C 1.38836 * 120.07509 * 359.76608 * 15 14 13 17 17 O 1.35510 * 120.16444 * 180.27437 * 16 15 14 18 18 C 1.34802 * 117.00249 * 354.40145 * 17 16 15 19 19 H 1.08008 * 120.00168 * 5.06078 * 18 17 16 20 20 C 1.38707 * 120.00259 * 185.06650 * 18 17 16 21 21 N 1.31513 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00284 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47187 * 89.99577 * 22 20 18 24 24 H 1.48497 * 109.47272 * 209.99931 * 22 20 18 25 25 H 1.48507 * 109.46818 * 329.99835 * 22 20 18 26 26 C 1.54633 * 101.76427 * 334.53750 * 5 4 3 27 27 C 1.34619 * 124.46733 * 270.02183 * 3 2 1 28 28 O 1.21286 * 124.90608 * 359.55588 * 27 3 2 29 29 H 1.08990 * 109.47384 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47053 * 300.00767 * 1 2 3 31 31 H 1.09009 * 109.46771 * 60.00219 * 1 2 3 32 32 H 1.08997 * 109.47259 * 239.99589 * 2 1 3 33 33 H 1.09009 * 109.46771 * 119.99781 * 2 1 3 34 34 H 1.08997 * 110.24765 * 78.03222 * 4 3 2 35 35 H 1.09007 * 110.24570 * 316.12287 * 4 3 2 36 36 H 1.09004 * 109.46837 * 304.99575 * 7 5 4 37 37 H 1.08996 * 109.47692 * 64.99630 * 7 5 4 38 38 H 1.07995 * 120.04576 * 359.97438 * 12 11 9 39 39 H 1.07996 * 119.83445 * 180.02562 * 13 12 11 40 40 H 1.07999 * 119.79050 * 180.02562 * 14 13 12 41 41 H 1.08005 * 119.96565 * 180.02562 * 15 14 13 42 42 H 0.96997 * 119.99838 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.48636 * 143.47017 * 26 5 4 44 44 H 1.08991 * 110.49143 * 266.12144 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 2.3518 3.6353 0.7508 6 1 1.3765 4.1125 0.8473 7 6 3.4171 4.4110 1.5281 8 8 3.3632 5.8134 1.1552 9 6 4.2426 6.6401 1.7545 10 8 5.0327 6.2011 2.5668 11 6 4.2463 8.0766 1.4247 12 6 3.3394 8.5859 0.4917 13 6 3.3477 9.9301 0.1882 14 6 4.2522 10.7809 0.8037 15 6 5.1539 10.2925 1.7273 16 6 5.1570 8.9421 2.0498 17 8 6.0379 8.4615 2.9605 18 6 6.9618 9.3226 3.4319 19 1 6.9263 10.3632 3.1450 20 6 7.9581 8.8721 4.2853 21 7 8.0011 7.6051 4.6350 22 14 9.2388 10.0652 4.9380 23 1 8.7594 10.6576 6.2125 24 1 10.5132 9.3414 5.1770 25 1 9.4618 11.1450 3.9432 26 6 2.7500 3.4854 -0.7358 27 6 2.2720 2.0996 -1.1099 28 8 2.1364 1.6944 -2.2450 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.2501 1.8641 1.6428 35 1 1.4941 2.0252 1.9390 36 1 3.2307 4.3121 2.5975 37 1 4.4029 4.0101 1.2925 38 1 2.6329 7.9270 0.0090 39 1 2.6459 10.3224 -0.5328 40 1 4.2508 11.8330 0.5596 41 1 5.8553 10.9622 2.2028 42 1 8.6977 7.2901 5.2321 43 1 2.2481 4.2388 -1.3430 44 1 3.8313 3.5598 -0.8506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124429892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:41 Heat of formation + Delta-G solvation = -139.516066 kcal Electronic energy + Delta-G solvation = -27934.086841 eV Core-core repulsion = 23816.601963 eV Total energy + Delta-G solvation = -4117.484877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73356 -41.33304 -40.31977 -38.13579 -37.92731 -37.10804 -35.13873 -34.35297 -32.37667 -31.18561 -30.60854 -29.19688 -27.52717 -26.99685 -24.87430 -24.11211 -23.26371 -21.94087 -21.83385 -20.44474 -19.88875 -19.18024 -18.40399 -18.01792 -17.65096 -17.23912 -16.88341 -16.39917 -16.28241 -16.11929 -15.64645 -15.45725 -15.26149 -15.08638 -14.94349 -14.69732 -14.43067 -14.32651 -14.04124 -13.68138 -13.56335 -13.27408 -13.26088 -13.01028 -12.84130 -12.68835 -12.54459 -12.44186 -12.35031 -12.13105 -12.09502 -11.94279 -11.57243 -11.55120 -11.02948 -10.87903 -10.84213 -9.89681 -9.79724 -9.09477 -8.47237 -6.17706 -0.01238 0.71457 1.34622 1.45322 1.45802 1.53005 1.62602 1.78199 2.05184 2.15214 2.84104 3.17046 3.22271 3.35497 3.39921 3.61324 3.87992 4.04163 4.10819 4.15036 4.20891 4.25123 4.29723 4.42403 4.45541 4.48188 4.55119 4.57092 4.60021 4.64590 4.83578 4.84867 4.94579 4.95987 5.05502 5.08323 5.15564 5.26494 5.41696 5.49579 5.55884 5.63045 5.69295 5.94896 6.01619 6.14652 6.92155 7.03202 7.06189 7.73139 8.72811 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002569 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.919668 B =10898.426078 C =12236.842441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.617 5.617 4 C 0.111 3.889 5 C -0.082 4.082 6 H 0.122 0.878 7 C 0.074 3.926 8 O -0.349 6.349 9 C 0.501 3.499 10 O -0.529 6.529 11 C -0.236 4.236 12 C -0.011 4.011 13 C -0.206 4.206 14 C -0.029 4.029 15 C -0.258 4.258 16 C 0.156 3.844 17 O -0.186 6.186 18 C -0.427 4.427 19 H 0.110 0.890 20 C -0.019 4.019 21 N -0.902 5.902 22 Si 1.021 2.979 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.248 1.248 26 C -0.148 4.148 27 C 0.512 3.488 28 O -0.580 6.580 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.129 0.871 42 H 0.272 0.728 43 H 0.113 0.887 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.502 -6.248 -6.943 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.350 5.350 4 C -0.012 4.012 5 C -0.100 4.100 6 H 0.140 0.860 7 C 0.000 4.000 8 O -0.266 6.266 9 C 0.349 3.651 10 O -0.420 6.420 11 C -0.239 4.239 12 C -0.029 4.029 13 C -0.224 4.224 14 C -0.047 4.047 15 C -0.277 4.277 16 C 0.101 3.899 17 O -0.088 6.088 18 C -0.502 4.502 19 H 0.127 0.873 20 C -0.219 4.219 21 N -0.538 5.538 22 Si 0.839 3.161 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.171 1.171 26 C -0.188 4.188 27 C 0.301 3.699 28 O -0.460 6.460 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.212 -7.122 -7.020 17.377 hybrid contribution 1.079 0.057 0.630 1.251 sum -13.132 -7.065 -6.390 16.224 Atomic orbital electron populations 1.22110 0.94819 1.03334 1.01886 1.21551 0.95121 0.80111 1.03853 1.48531 1.64921 1.14506 1.07023 1.22151 1.04023 0.87900 0.87077 1.22015 1.00144 0.94856 0.93022 0.86034 1.23039 0.99542 0.77237 1.00173 1.86455 1.55563 1.20578 1.64029 1.21290 0.77845 0.87749 0.78230 1.91002 1.39411 1.77771 1.33771 1.18483 1.06961 0.88659 1.09756 1.21410 0.93535 0.96688 0.91223 1.21221 1.03262 0.92668 1.05253 1.21514 0.90943 1.01159 0.91060 1.21288 1.06239 0.93776 1.06374 1.19992 0.89170 0.93192 0.87528 1.84136 1.37544 1.39243 1.47908 1.22059 1.06622 0.92398 1.29166 0.87268 1.26730 0.99858 0.98877 0.96393 1.70284 1.33924 1.16513 1.33039 0.84568 0.75629 0.76783 0.79073 1.18622 1.19843 1.17131 1.22447 1.03977 0.94640 0.97691 1.21337 0.75787 0.88612 0.84163 1.90684 1.55694 1.76727 1.22931 0.89683 0.91262 0.94463 0.91466 0.87519 0.89669 0.86733 0.90481 0.91863 0.82288 0.81867 0.82462 0.85307 0.91860 0.86820 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.24 71.98 0.74 -1.24 16 2 C 0.11 1.61 6.66 86.38 0.58 2.18 16 3 N -0.62 -10.93 2.94 -817.68 -2.40 -13.33 16 4 C 0.11 1.48 6.91 86.83 0.60 2.08 16 5 C -0.08 -1.39 3.42 -9.74 -0.03 -1.42 16 6 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 7 C 0.07 1.89 4.77 71.98 0.34 2.23 16 8 O -0.35 -11.25 9.44 -56.68 -0.53 -11.78 16 9 C 0.50 22.02 7.89 70.23 0.55 22.57 16 10 O -0.53 -28.92 14.96 26.77 0.40 -28.52 16 11 C -0.24 -10.05 5.89 -20.00 -0.12 -10.17 16 12 C -0.01 -0.33 9.61 22.53 0.22 -0.11 16 13 C -0.21 -5.43 10.02 22.25 0.22 -5.20 16 14 C -0.03 -0.85 10.03 22.30 0.22 -0.63 16 15 C -0.26 -10.45 9.16 22.36 0.20 -10.25 16 16 C 0.16 7.72 6.66 22.92 0.15 7.88 16 17 O -0.19 -11.29 7.84 1.08 0.01 -11.28 16 18 C -0.43 -24.67 9.49 67.93 0.64 -24.03 16 19 H 0.11 5.62 5.21 -2.91 -0.02 5.61 16 20 C -0.02 -1.07 5.49 84.85 0.47 -0.60 16 21 N -0.90 -56.47 13.67 21.62 0.30 -56.18 16 22 Si 1.02 42.32 29.55 68.60 2.03 44.34 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 26 C -0.15 -2.99 6.39 30.59 0.20 -2.79 16 27 C 0.51 12.36 8.03 87.87 0.71 13.06 16 28 O -0.58 -18.93 17.60 -3.05 -0.05 -18.99 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 1.16 7.93 -2.39 -0.02 1.14 16 33 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 1.09 7.89 -2.39 -0.02 1.08 16 35 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 1.75 7.93 -2.39 -0.02 1.73 16 38 H 0.16 3.83 7.61 -2.91 -0.02 3.80 16 39 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.13 5.24 5.64 -2.91 -0.02 5.22 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.10 2.21 7.76 -2.39 -0.02 2.19 16 Total: -1.00 -85.83 377.49 6.45 -79.38 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 1.02 Total: 22.79 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.69 Total: -6.43 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -2.11 Total: -69.51 kcal Atomic # 8 Polarization: -70.39 SS G_CDS: -0.18 Total: -70.57 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -85.83 6.45 -79.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124429892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.138 kcal (2) G-P(sol) polarization free energy of solvation -85.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds