Wall clock time and date at job start Tue Mar 31 2020 18:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.47169 * 2 1 4 4 C 1.46898 * 110.99880 * 163.04846 * 3 2 1 5 5 C 1.50704 * 109.47086 * 293.95113 * 4 3 2 6 6 H 1.08002 * 119.99563 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99821 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00407 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99681 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47488 * 89.99600 * 9 7 5 11 11 H 1.48497 * 109.46885 * 209.99763 * 9 7 5 12 12 H 1.48498 * 109.47058 * 329.99104 * 9 7 5 13 13 C 1.46903 * 110.99467 * 286.99760 * 3 2 1 14 14 N 1.46501 * 109.46812 * 170.97149 * 13 3 2 15 15 N 1.40155 * 126.23671 * 87.93168 * 14 13 3 16 16 C 1.30352 * 108.04444 * 179.97438 * 15 14 13 17 17 C 1.47962 * 125.73940 * 179.97438 * 16 15 14 18 18 C 1.39932 * 120.92379 * 162.14418 * 17 16 15 19 19 C 1.37945 * 118.99912 * 179.73088 * 18 17 16 20 20 N 1.31934 * 120.89744 * 0.55634 * 19 18 17 21 21 C 1.31937 * 122.04754 * 359.71193 * 20 19 18 22 22 C 1.37941 * 120.90079 * 0.02562 * 21 20 19 23 23 N 1.38129 * 108.52881 * 0.02562 * 16 15 14 24 24 C 1.46500 * 125.86801 * 180.02562 * 23 16 15 25 25 C 1.34792 * 108.26659 * 359.73636 * 23 16 15 26 26 S 1.71208 * 126.18154 * 180.26851 * 25 23 16 27 27 H 1.09002 * 109.47117 * 305.77775 * 1 2 3 28 28 H 1.09006 * 109.46999 * 65.76925 * 1 2 3 29 29 H 1.08998 * 109.47568 * 185.76857 * 1 2 3 30 30 H 1.09000 * 109.47169 * 239.99612 * 2 1 3 31 31 H 1.09005 * 109.46646 * 119.99474 * 2 1 3 32 32 H 1.08999 * 109.47290 * 53.95302 * 4 3 2 33 33 H 1.08997 * 109.46904 * 173.94994 * 4 3 2 34 34 H 0.96992 * 120.00398 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47352 * 290.97313 * 13 3 2 36 36 H 1.09000 * 109.47304 * 50.97406 * 13 3 2 37 37 H 1.08001 * 120.49801 * 359.96944 * 18 17 16 38 38 H 1.08001 * 119.55080 * 180.28798 * 19 18 17 39 39 H 1.08004 * 119.55133 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.50620 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46959 * 83.76097 * 24 23 16 42 42 H 1.09002 * 109.47376 * 203.76265 * 24 23 16 43 43 H 1.08994 * 109.47283 * 323.76077 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4320 1.4441 0.3999 5 6 3.5649 1.0168 1.8389 6 1 2.6878 0.7306 2.4004 7 6 4.8060 0.9925 2.4390 8 7 5.8739 1.3415 1.7554 9 14 4.9708 0.4622 4.2225 10 1 5.1868 -1.0056 4.2847 11 1 6.1268 1.1593 4.8413 12 1 3.7298 0.8117 4.9595 13 6 1.8171 2.0149 -1.3116 14 7 2.1136 3.4465 -1.2168 15 7 3.3688 4.0458 -1.3890 16 6 3.2278 5.3316 -1.2281 17 6 4.3080 6.3382 -1.3244 18 6 4.0132 7.6943 -1.5038 19 6 5.0511 8.5995 -1.5828 20 7 6.3060 8.2001 -1.5025 21 6 6.6277 6.9311 -1.3389 22 6 5.6529 5.9596 -1.2447 23 7 1.9007 5.5964 -0.9514 24 6 1.3227 6.9199 -0.7051 25 6 1.2275 4.4286 -0.9532 26 16 -0.4488 4.2279 -0.6688 27 1 -0.3633 0.6008 0.8338 28 1 -0.3633 0.4218 -0.9372 29 1 -0.3634 -1.0224 0.1033 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.0169 0.7765 -0.2328 33 1 3.7988 2.4644 0.2884 34 1 6.7470 1.3241 2.1774 35 1 2.4814 1.5539 -2.0425 36 1 0.7819 1.8782 -1.6244 37 1 2.9885 8.0277 -1.5755 38 1 4.8337 9.6489 -1.7165 39 1 7.6684 6.6489 -1.2778 40 1 5.9234 4.9226 -1.1113 41 1 1.0925 7.3986 -1.6568 42 1 0.4085 6.8142 -0.1210 43 1 2.0371 7.5316 -0.1542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125325509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:18 Heat of formation + Delta-G solvation = 150.749268 kcal Electronic energy + Delta-G solvation = -26526.970097 eV Core-core repulsion = 22929.410442 eV Total energy + Delta-G solvation = -3597.559655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64617 -40.27786 -37.48183 -35.24971 -34.00702 -32.76150 -31.84385 -31.40096 -29.98733 -28.40233 -27.21044 -25.46190 -24.19114 -23.96030 -22.72964 -22.42274 -21.45470 -20.28346 -18.24523 -17.16672 -16.95920 -16.85196 -16.34855 -16.14970 -15.85879 -15.79888 -14.80418 -14.67787 -14.29689 -14.19402 -14.03933 -13.90059 -13.43621 -13.21710 -12.91600 -12.64663 -12.27435 -12.14339 -11.93902 -11.61596 -11.48357 -11.18841 -11.14105 -11.05622 -10.80103 -10.60842 -10.57170 -10.19266 -9.91492 -9.87569 -9.73320 -9.51304 -9.28954 -8.53208 -7.61218 -7.45563 -7.31352 -6.11690 -4.12917 0.29434 0.79080 1.22768 1.49858 1.98628 2.32608 2.52535 3.25727 3.32215 3.37641 3.49246 3.82242 4.09425 4.12690 4.33815 4.46121 4.51792 4.66711 4.73782 4.78205 4.86922 5.15554 5.18326 5.24103 5.32177 5.42655 5.45061 5.51910 5.55391 5.68566 5.83926 5.88239 6.06453 6.10637 6.27815 6.29344 6.43036 6.63606 6.80486 7.11436 7.15971 7.24220 7.60016 7.64882 7.91402 8.00504 8.35509 8.93923 9.51013 10.98760 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008820 B = 0.004894 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.795788 B = 5720.087272 C = 8020.710548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 N -0.543 5.543 4 C 0.189 3.811 5 C -0.509 4.509 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.305 3.695 14 N -0.348 5.348 15 N -0.230 5.230 16 C 0.291 3.709 17 C 0.020 3.980 18 C -0.161 4.161 19 C 0.103 3.897 20 N -0.474 5.474 21 C 0.108 3.892 22 C -0.118 4.118 23 N -0.494 5.494 24 C 0.075 3.925 25 C 0.478 3.522 26 S -0.586 6.586 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.024 0.976 31 H 0.095 0.905 32 H -0.007 1.007 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 12.509 -9.548 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 N -0.270 5.270 4 C 0.064 3.936 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.095 3.905 14 N -0.140 5.140 15 N -0.051 5.051 16 C 0.014 3.986 17 C 0.009 3.991 18 C -0.182 4.182 19 C -0.054 4.054 20 N -0.183 5.183 21 C -0.048 4.048 22 C -0.140 4.140 23 N -0.195 5.195 24 C -0.067 4.067 25 C 0.118 3.882 26 S -0.458 6.458 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.011 0.989 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.181 0.819 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.176 12.357 -9.281 15.606 hybrid contribution 0.467 -0.751 0.607 1.073 sum -1.709 11.606 -8.674 14.589 Atomic orbital electron populations 1.21825 0.95622 1.00666 1.02323 1.21927 0.94776 0.87722 1.01696 1.62056 1.24693 1.17715 1.22531 1.19875 0.80049 0.97550 0.96127 1.21116 0.93107 1.44472 0.96029 0.91754 1.24955 0.95730 0.95464 0.98218 1.69954 0.98517 1.48341 1.36656 0.86519 0.77747 0.78638 0.84715 1.20572 1.21240 1.19738 1.22364 1.02319 0.71737 0.94037 1.49505 1.02021 1.08373 1.54108 1.77648 1.03791 1.03570 1.20092 1.22310 0.84531 0.91754 1.00017 1.17753 0.90265 0.90357 1.00747 1.22492 1.02310 0.92096 1.01340 1.22706 0.87227 1.00157 0.95312 1.67674 1.21404 1.18778 1.10479 1.22845 1.00389 0.87363 0.94251 1.22446 0.91220 1.03186 0.97098 1.46016 1.06248 1.09078 1.58182 1.22422 1.01873 0.78584 1.03798 1.23725 0.95704 0.81504 0.87293 1.93179 0.88347 1.92160 1.72126 0.91479 0.93432 0.93071 0.95786 0.88702 0.98889 0.94440 0.92948 0.91617 0.86131 0.83661 0.81858 0.81476 0.82647 0.89493 0.86721 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.88 37.16 0.37 -1.98 16 2 C 0.07 1.24 5.53 -3.82 -0.02 1.22 16 3 N -0.54 -11.60 4.59 -239.97 -1.10 -12.70 16 4 C 0.19 4.80 4.65 -4.98 -0.02 4.78 16 5 C -0.51 -14.10 8.27 -34.44 -0.28 -14.39 16 6 H 0.06 1.80 7.27 -52.49 -0.38 1.41 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.31 5.63 5.80 -63.31 -0.37 5.26 16 14 N -0.35 -6.52 3.36 -65.01 -0.22 -6.74 16 15 N -0.23 -4.16 10.97 32.59 0.36 -3.80 16 16 C 0.29 4.35 7.69 -153.93 -1.18 3.17 16 17 C 0.02 0.24 5.89 -104.64 -0.62 -0.38 16 18 C -0.16 -1.38 8.71 -39.05 -0.34 -1.73 16 19 C 0.10 0.85 11.17 -17.62 -0.20 0.66 16 20 N -0.47 -4.99 10.35 -13.35 -0.14 -5.13 16 21 C 0.11 1.12 11.17 -17.62 -0.20 0.93 16 22 C -0.12 -1.42 9.79 -39.05 -0.38 -1.80 16 23 N -0.49 -7.13 3.16 -122.56 -0.39 -7.52 16 24 C 0.07 0.70 9.15 59.85 0.55 1.24 16 25 C 0.48 8.58 7.85 -86.81 -0.68 7.90 16 26 S -0.59 -11.45 29.41 -107.50 -3.16 -14.61 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.71 6.87 -51.93 -0.36 0.36 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 31 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 32 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 33 H 0.04 1.02 6.20 -51.93 -0.32 0.70 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 36 H 0.12 2.07 6.04 -51.93 -0.31 1.76 16 37 H 0.15 0.86 4.86 -52.49 -0.26 0.60 16 38 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.17 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.16 2.08 8.01 -52.49 -0.42 1.66 16 41 H 0.09 0.57 7.71 -51.93 -0.40 0.17 16 42 H 0.11 1.18 7.45 -51.93 -0.39 0.80 16 43 H 0.09 0.66 6.37 -51.93 -0.33 0.33 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -34.76 369.37 -12.44 -47.20 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.60 Total: -0.09 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -3.48 Total: 6.40 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.75 Total: -60.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -11.45 SS G_CDS: -3.16 Total: -14.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.76 -12.44 -47.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125325509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.951 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds