Wall clock time and date at job start Tue Mar 31 2020 18:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.47169 * 2 1 4 4 C 1.46898 * 110.99880 * 163.04846 * 3 2 1 5 5 C 1.50704 * 109.47086 * 293.95113 * 4 3 2 6 6 H 1.08002 * 119.99563 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99821 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00407 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99681 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47488 * 89.99600 * 9 7 5 11 11 H 1.48497 * 109.46885 * 209.99763 * 9 7 5 12 12 H 1.48498 * 109.47058 * 329.99104 * 9 7 5 13 13 C 1.46903 * 110.99467 * 286.99760 * 3 2 1 14 14 N 1.46501 * 109.46812 * 170.97149 * 13 3 2 15 15 N 1.40155 * 126.23671 * 87.93168 * 14 13 3 16 16 C 1.30352 * 108.04444 * 179.97438 * 15 14 13 17 17 C 1.47962 * 125.73940 * 179.97438 * 16 15 14 18 18 C 1.39932 * 120.92379 * 162.14418 * 17 16 15 19 19 C 1.37945 * 118.99912 * 179.73088 * 18 17 16 20 20 N 1.31934 * 120.89744 * 0.55634 * 19 18 17 21 21 C 1.31937 * 122.04754 * 359.71193 * 20 19 18 22 22 C 1.37941 * 120.90079 * 0.02562 * 21 20 19 23 23 N 1.38129 * 108.52881 * 0.02562 * 16 15 14 24 24 C 1.46500 * 125.86801 * 180.02562 * 23 16 15 25 25 C 1.34792 * 108.26659 * 359.73636 * 23 16 15 26 26 S 1.71208 * 126.18154 * 180.26851 * 25 23 16 27 27 H 1.09002 * 109.47117 * 305.77775 * 1 2 3 28 28 H 1.09006 * 109.46999 * 65.76925 * 1 2 3 29 29 H 1.08998 * 109.47568 * 185.76857 * 1 2 3 30 30 H 1.09000 * 109.47169 * 239.99612 * 2 1 3 31 31 H 1.09005 * 109.46646 * 119.99474 * 2 1 3 32 32 H 1.08999 * 109.47290 * 53.95302 * 4 3 2 33 33 H 1.08997 * 109.46904 * 173.94994 * 4 3 2 34 34 H 0.96992 * 120.00398 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47352 * 290.97313 * 13 3 2 36 36 H 1.09000 * 109.47304 * 50.97406 * 13 3 2 37 37 H 1.08001 * 120.49801 * 359.96944 * 18 17 16 38 38 H 1.08001 * 119.55080 * 180.28798 * 19 18 17 39 39 H 1.08004 * 119.55133 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.50620 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46959 * 83.76097 * 24 23 16 42 42 H 1.09002 * 109.47376 * 203.76265 * 24 23 16 43 43 H 1.08994 * 109.47283 * 323.76077 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4320 1.4441 0.3999 5 6 3.5649 1.0168 1.8389 6 1 2.6878 0.7306 2.4004 7 6 4.8060 0.9925 2.4390 8 7 5.8739 1.3415 1.7554 9 14 4.9708 0.4622 4.2225 10 1 5.1868 -1.0056 4.2847 11 1 6.1268 1.1593 4.8413 12 1 3.7298 0.8117 4.9595 13 6 1.8171 2.0149 -1.3116 14 7 2.1136 3.4465 -1.2168 15 7 3.3688 4.0458 -1.3890 16 6 3.2278 5.3316 -1.2281 17 6 4.3080 6.3382 -1.3244 18 6 4.0132 7.6943 -1.5038 19 6 5.0511 8.5995 -1.5828 20 7 6.3060 8.2001 -1.5025 21 6 6.6277 6.9311 -1.3389 22 6 5.6529 5.9596 -1.2447 23 7 1.9007 5.5964 -0.9514 24 6 1.3227 6.9199 -0.7051 25 6 1.2275 4.4286 -0.9532 26 16 -0.4488 4.2279 -0.6688 27 1 -0.3633 0.6008 0.8338 28 1 -0.3633 0.4218 -0.9372 29 1 -0.3634 -1.0224 0.1033 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.0169 0.7765 -0.2328 33 1 3.7988 2.4644 0.2884 34 1 6.7470 1.3241 2.1774 35 1 2.4814 1.5539 -2.0425 36 1 0.7819 1.8782 -1.6244 37 1 2.9885 8.0277 -1.5755 38 1 4.8337 9.6489 -1.7165 39 1 7.6684 6.6489 -1.2778 40 1 5.9234 4.9226 -1.1113 41 1 1.0925 7.3986 -1.6568 42 1 0.4085 6.8142 -0.1210 43 1 2.0371 7.5316 -0.1542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125325509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:17 Heat of formation + Delta-G solvation = 129.755733 kcal Electronic energy + Delta-G solvation = -26527.880445 eV Core-core repulsion = 22929.410442 eV Total energy + Delta-G solvation = -3598.470003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.90929 -41.10304 -39.06088 -36.52531 -35.09867 -34.78340 -32.91344 -32.30319 -31.55541 -29.77059 -28.61794 -26.92007 -25.30817 -24.97210 -24.38000 -23.78456 -22.52014 -21.89732 -19.46040 -18.71589 -18.13553 -18.11503 -17.83817 -17.25345 -16.95222 -16.87086 -16.56058 -16.24463 -15.57615 -15.22974 -15.01489 -14.82711 -14.74564 -14.49104 -14.26964 -14.11549 -13.74926 -13.62365 -13.23236 -12.93247 -12.85347 -12.71086 -12.60148 -12.49895 -12.45469 -12.39645 -11.98081 -11.83566 -11.51953 -11.32779 -10.76890 -10.67903 -10.64943 -10.27761 -9.30774 -8.96601 -8.81930 -8.25933 -6.35345 -0.66604 -0.14611 0.03144 0.18334 0.89128 1.02300 1.29500 1.35147 1.35762 1.47299 2.33777 2.65735 2.74353 2.98368 3.05938 3.11978 3.45407 3.48527 3.71724 3.76611 3.94217 3.96755 4.05175 4.19851 4.22831 4.36722 4.42279 4.43698 4.60745 4.66856 4.68324 4.78371 4.82437 4.96084 4.96218 5.03057 5.10918 5.21971 5.32638 5.46345 5.52692 5.56705 5.91242 5.95975 6.18546 6.38454 6.78128 6.83743 7.33000 8.84330 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008820 B = 0.004894 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.795788 B = 5720.087272 C = 8020.710548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.065 3.935 3 N -0.555 5.555 4 C 0.211 3.789 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.010 3.990 8 N -0.924 5.924 9 Si 0.962 3.038 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.272 1.272 13 C 0.308 3.692 14 N -0.359 5.359 15 N -0.276 5.276 16 C 0.308 3.692 17 C -0.002 4.002 18 C -0.140 4.140 19 C 0.111 3.889 20 N -0.486 5.486 21 C 0.107 3.893 22 C -0.135 4.135 23 N -0.483 5.483 24 C 0.059 3.941 25 C 0.474 3.526 26 S -0.630 6.630 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.071 0.929 32 H -0.035 1.035 33 H 0.016 0.984 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.180 0.820 38 H 0.207 0.793 39 H 0.183 0.817 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 14.768 -9.596 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 N -0.281 5.281 4 C 0.085 3.915 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.189 4.189 8 N -0.564 5.564 9 Si 0.787 3.213 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.197 1.197 13 C 0.098 3.902 14 N -0.150 5.150 15 N -0.097 5.097 16 C 0.031 3.969 17 C -0.014 4.014 18 C -0.161 4.161 19 C -0.046 4.046 20 N -0.196 5.196 21 C -0.048 4.048 22 C -0.157 4.157 23 N -0.182 5.182 24 C -0.079 4.079 25 C 0.111 3.889 26 S -0.503 6.503 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.090 0.910 32 H -0.018 1.018 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.152 0.848 37 H 0.197 0.803 38 H 0.224 0.776 39 H 0.200 0.800 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.499 14.639 -9.337 17.543 hybrid contribution 0.644 -1.293 0.551 1.546 sum -1.855 13.347 -8.786 16.086 Atomic orbital electron populations 1.21704 0.93139 1.02151 1.01980 1.21975 0.96638 0.86349 1.01270 1.62002 1.21878 1.19515 1.24716 1.19426 0.82119 0.95247 0.94749 1.21372 0.93119 1.44813 0.97177 0.92505 1.25780 0.95346 0.95329 1.02457 1.70068 0.98981 1.48955 1.38404 0.85496 0.77662 0.78712 0.79469 1.19412 1.20567 1.19663 1.22369 1.03155 0.71976 0.92661 1.49493 1.02608 1.08569 1.54317 1.77661 1.03621 1.05419 1.23007 1.22870 0.85162 0.91482 0.97378 1.17916 0.89154 0.91267 1.03019 1.22836 1.04238 0.90075 0.98996 1.23447 0.86141 1.01942 0.93036 1.67766 1.22844 1.18334 1.10619 1.23030 1.00777 0.87168 0.93862 1.22326 0.92105 1.02484 0.98810 1.46346 1.05796 1.09698 1.56370 1.22961 1.02153 0.76566 1.06255 1.23593 0.95207 0.82569 0.87551 1.93163 0.89897 1.92772 1.74473 0.93524 0.92341 0.90242 0.94249 0.91021 1.01771 0.96642 0.92671 0.91014 0.84774 0.80335 0.77637 0.79970 0.85239 0.85739 0.87614 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.88 71.98 0.71 -3.44 16 2 C 0.06 2.47 5.53 86.30 0.48 2.95 16 3 N -0.55 -24.50 4.59 -913.14 -4.19 -28.69 16 4 C 0.21 11.22 4.65 85.56 0.40 11.62 16 5 C -0.53 -30.15 8.27 25.60 0.21 -29.94 16 6 H 0.06 3.27 7.27 -2.91 -0.02 3.25 16 7 C 0.01 0.56 5.46 84.66 0.46 1.02 16 8 N -0.92 -54.63 13.29 21.45 0.28 -54.34 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.31 11.69 5.80 170.80 0.99 12.69 16 14 N -0.36 -13.82 3.36 -359.60 -1.21 -15.03 16 15 N -0.28 -10.36 10.97 -50.82 -0.56 -10.91 16 16 C 0.31 9.15 7.69 136.32 1.05 10.20 16 17 C 0.00 -0.06 5.89 -19.88 -0.12 -0.17 16 18 C -0.14 -1.90 8.71 22.61 0.20 -1.70 16 19 C 0.11 1.38 11.17 84.61 0.95 2.33 16 20 N -0.49 -8.96 10.35 -196.16 -2.03 -10.99 16 21 C 0.11 2.14 11.17 84.61 0.95 3.08 16 22 C -0.13 -3.31 9.79 22.61 0.22 -3.08 16 23 N -0.48 -13.42 3.16 -541.68 -1.71 -15.14 16 24 C 0.06 0.94 9.15 127.77 1.17 2.10 16 25 C 0.47 17.09 7.85 179.02 1.41 18.50 16 26 S -0.63 -24.72 29.41 -56.49 -1.66 -26.38 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.70 6.87 -2.38 -0.02 1.68 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 1.36 8.04 -2.39 -0.02 1.34 16 31 H 0.07 3.04 6.58 -2.38 -0.02 3.02 16 32 H -0.04 -2.04 8.12 -2.39 -0.02 -2.06 16 33 H 0.02 0.89 6.20 -2.39 -0.01 0.88 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.07 2.60 8.13 -2.39 -0.02 2.58 16 36 H 0.13 4.66 6.04 -2.39 -0.01 4.65 16 37 H 0.18 1.15 4.86 -2.91 -0.01 1.13 16 38 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.13 3.81 8.01 -2.91 -0.02 3.78 16 41 H 0.12 1.08 7.71 -2.39 -0.02 1.06 16 42 H 0.11 1.98 7.45 -2.39 -0.02 1.96 16 43 H 0.12 1.23 6.37 -2.39 -0.02 1.21 16 Total: -1.00 -78.99 369.37 1.05 -77.93 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.04 Total: 10.75 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 9.07 Total: 26.16 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -9.41 Total: -135.09 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -24.72 SS G_CDS: -1.66 Total: -26.38 kcal Total: -78.99 1.05 -77.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125325509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.689 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds