Wall clock time and date at job start Tue Mar 31 2020 18:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47031 * 2 1 4 4 C 1.46901 * 110.99918 * 301.69437 * 3 2 1 5 5 C 1.50696 * 109.47377 * 289.30040 * 4 3 2 6 6 H 1.07995 * 120.00374 * 4.29536 * 5 4 3 7 7 C 1.37876 * 119.99967 * 184.30285 * 5 4 3 8 8 N 1.31517 * 120.00101 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00289 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47069 * 59.99845 * 9 7 5 11 11 H 1.48495 * 109.47639 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46860 * 300.00243 * 9 7 5 13 13 C 1.46896 * 110.99955 * 65.65134 * 3 2 1 14 14 N 1.46503 * 109.47092 * 66.04938 * 13 3 2 15 15 N 1.40152 * 126.24810 * 90.02538 * 14 13 3 16 16 C 1.30344 * 108.04120 * 179.97438 * 15 14 13 17 17 C 1.47979 * 125.73317 * 179.97438 * 16 15 14 18 18 C 1.39937 * 120.55576 * 160.70914 * 17 16 15 19 19 C 1.38375 * 118.29722 * 179.72598 * 18 17 16 20 20 C 1.38333 * 119.30183 * 0.02562 * 19 18 17 21 21 N 1.31912 * 121.06516 * 359.97438 * 20 19 18 22 22 C 1.31715 * 121.87015 * 359.97438 * 21 20 19 23 23 N 1.38088 * 108.53993 * 0.26150 * 16 15 14 24 24 C 1.46499 * 125.86938 * 179.69802 * 23 16 15 25 25 C 1.34794 * 108.27237 * 359.56429 * 23 16 15 26 26 S 1.71198 * 126.18333 * 180.15775 * 25 23 16 27 27 H 1.09003 * 109.46795 * 67.55149 * 1 2 3 28 28 H 1.08991 * 109.47045 * 187.55242 * 1 2 3 29 29 H 1.08994 * 109.47225 * 307.55495 * 1 2 3 30 30 H 1.09003 * 109.47269 * 240.00277 * 2 1 3 31 31 H 1.09000 * 109.47440 * 119.99839 * 2 1 3 32 32 H 1.09008 * 109.46897 * 49.29931 * 4 3 2 33 33 H 1.08997 * 109.47350 * 169.29327 * 4 3 2 34 34 H 0.96995 * 120.00448 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47169 * 306.04226 * 13 3 2 36 36 H 1.09008 * 109.46705 * 186.04647 * 13 3 2 37 37 H 1.08005 * 120.84572 * 359.75351 * 18 17 16 38 38 H 1.07997 * 120.34708 * 180.02562 * 19 18 17 39 39 H 1.07994 * 119.46705 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.71245 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.46690 * 83.81097 * 24 23 16 42 42 H 1.08999 * 109.47799 * 203.81430 * 24 23 16 43 43 H 1.09002 * 109.47078 * 323.81810 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5158 2.1215 -1.1669 5 6 2.1897 1.6093 -2.4137 6 1 2.8671 0.7702 -2.3555 7 6 1.9416 2.2119 -3.6287 8 7 1.1164 3.2336 -3.6996 9 14 2.7774 1.5774 -5.1740 10 1 2.3999 0.1581 -5.3938 11 1 2.3458 2.3901 -6.3396 12 1 4.2506 1.6792 -5.0173 13 6 1.6621 2.0698 1.2494 14 7 2.3749 1.4482 2.3683 15 7 3.6373 1.8159 2.8534 16 6 3.9299 1.0317 3.8526 17 6 5.1742 1.0783 4.6521 18 6 5.2276 0.4886 5.9200 19 6 6.4167 0.5548 6.6247 20 6 7.5041 1.1960 6.0590 21 7 7.4244 1.7431 4.8614 22 6 6.3153 1.7052 4.1519 23 7 2.8865 0.1459 4.0357 24 6 2.8225 -0.9067 5.0526 25 6 1.9355 0.4179 3.1199 26 16 0.4432 -0.4012 2.9386 27 1 -0.3633 0.3924 -0.9498 28 1 -0.3633 -1.0187 0.1351 29 1 -0.3633 0.6263 0.8146 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.4386 1.9768 -1.2505 33 1 1.7315 3.1833 -1.0474 34 1 0.9415 3.6573 -4.5544 35 1 0.5875 1.9891 1.4133 36 1 1.9410 3.1213 1.1801 37 1 4.3630 -0.0059 6.3377 38 1 6.4949 0.1105 7.6059 39 1 8.4333 1.2496 6.6068 40 1 6.2890 2.1643 3.1747 41 1 2.4652 -0.4835 5.9914 42 1 2.1390 -1.6892 4.7233 43 1 3.8159 -1.3304 5.2000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125327856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:15 Heat of formation + Delta-G solvation = 156.872963 kcal Electronic energy + Delta-G solvation = -26227.593706 eV Core-core repulsion = 22630.299595 eV Total energy + Delta-G solvation = -3597.294111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80908 -40.52718 -37.69345 -35.40058 -33.90006 -32.92660 -32.48913 -31.06469 -29.55322 -28.45033 -27.13506 -25.43609 -24.43418 -24.24043 -23.13515 -22.59170 -21.62830 -19.79248 -18.08164 -17.67833 -17.11211 -16.97972 -16.54951 -16.27957 -16.03986 -15.38145 -15.15673 -14.91981 -14.44437 -14.38944 -14.20174 -14.09034 -13.56758 -12.96699 -12.92668 -12.51400 -12.45248 -12.01842 -11.83263 -11.59449 -11.51635 -11.23303 -11.15483 -10.97611 -10.76317 -10.61705 -10.51931 -10.33652 -10.07340 -9.97004 -9.78117 -9.49058 -9.34786 -8.44668 -7.54077 -7.48358 -7.21251 -6.04864 -4.05761 0.04905 0.62928 1.10538 1.31569 1.75162 2.19885 2.36206 3.24354 3.34156 3.37782 3.41109 3.65801 3.88849 4.07719 4.15849 4.23114 4.35331 4.41030 4.57744 4.69378 4.78733 4.86950 5.01446 5.15742 5.25933 5.31901 5.37148 5.42396 5.56666 5.58817 5.92701 5.98628 6.03061 6.21118 6.32274 6.42652 6.73847 6.81633 7.00861 7.13216 7.21165 7.36710 7.37384 7.70882 7.95477 8.07899 8.41466 8.99286 9.57688 11.05813 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003327 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.965860 B = 8412.989544 C = 9952.866243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.061 3.939 3 N -0.544 5.544 4 C 0.196 3.804 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.295 3.705 14 N -0.345 5.345 15 N -0.241 5.241 16 C 0.297 3.703 17 C -0.082 4.082 18 C -0.058 4.058 19 C -0.170 4.170 20 C 0.119 3.881 21 N -0.477 5.477 22 C 0.157 3.843 23 N -0.495 5.495 24 C 0.075 3.925 25 C 0.460 3.540 26 S -0.576 6.576 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.010 0.990 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -5.673 24.439 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.067 4.067 3 N -0.269 5.269 4 C 0.071 3.929 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.086 3.914 14 N -0.137 5.137 15 N -0.061 5.061 16 C 0.019 3.981 17 C -0.087 4.087 18 C -0.086 4.086 19 C -0.190 4.190 20 C -0.039 4.039 21 N -0.185 5.185 22 C -0.003 4.003 23 N -0.197 5.197 24 C -0.067 4.067 25 C 0.100 3.900 26 S -0.447 6.447 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.190 0.810 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.963 -4.756 23.084 25.588 hybrid contribution -0.641 -0.886 0.008 1.093 sum 9.322 -5.642 23.092 25.534 Atomic orbital electron populations 1.22315 0.97541 1.01848 1.01232 1.22091 0.93902 0.89571 1.01171 1.62360 1.60216 1.03334 1.00995 1.19800 0.94648 0.93349 0.85058 1.20995 1.26463 1.15889 0.90873 0.92028 1.24941 0.95396 0.95005 0.99061 1.69931 1.35720 1.22296 1.25810 0.86539 0.79847 0.78789 0.82128 1.20242 1.21320 1.20210 1.22564 0.93325 0.95403 0.80106 1.49876 1.11649 1.25528 1.26651 1.77585 0.98458 1.20752 1.09330 1.22261 0.90826 0.89766 0.95243 1.18501 0.90536 1.04973 0.94686 1.21942 0.99159 0.95306 0.92174 1.22118 0.93405 1.01633 1.01849 1.23112 0.98675 0.91008 0.91070 1.67883 1.26165 1.17394 1.07059 1.23115 0.85865 0.91911 0.99411 1.46087 1.14229 1.29731 1.29639 1.22395 1.05183 0.89777 0.89334 1.23957 0.93617 0.88070 0.84371 1.93402 1.06743 1.60284 1.84316 0.92772 0.93254 0.91716 0.90700 0.92859 0.97211 0.94931 0.92779 0.89003 0.87153 0.83681 0.83623 0.81873 0.81011 0.89532 0.86673 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 7.63 37.16 0.28 -3.16 16 2 C 0.06 1.28 5.37 -3.82 -0.02 1.25 16 3 N -0.54 -11.79 4.81 -239.97 -1.15 -12.94 16 4 C 0.20 4.93 4.53 -4.98 -0.02 4.91 16 5 C -0.50 -14.01 8.67 -34.44 -0.30 -14.31 16 6 H 0.06 1.73 7.27 -52.49 -0.38 1.35 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.30 5.45 5.83 -63.32 -0.37 5.08 16 14 N -0.34 -5.82 3.58 -65.01 -0.23 -6.05 16 15 N -0.24 -3.67 12.33 32.58 0.40 -3.26 16 16 C 0.30 3.58 7.66 -153.97 -1.18 2.40 16 17 C -0.08 -0.74 5.87 -104.81 -0.61 -1.36 16 18 C -0.06 -0.34 8.69 -38.90 -0.34 -0.68 16 19 C -0.17 -0.75 10.10 -39.50 -0.40 -1.15 16 20 C 0.12 0.71 11.17 -17.48 -0.20 0.51 16 21 N -0.48 -4.40 10.35 -12.93 -0.13 -4.54 16 22 C 0.16 1.53 10.86 -17.14 -0.19 1.34 16 23 N -0.50 -5.93 3.16 -122.57 -0.39 -6.32 16 24 C 0.07 0.53 9.14 59.85 0.55 1.08 16 25 C 0.46 7.30 6.61 -86.80 -0.57 6.73 16 26 S -0.58 -10.30 24.56 -107.50 -2.64 -12.94 16 27 H 0.05 1.18 6.58 -51.93 -0.34 0.84 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.29 4.60 -51.93 -0.24 1.05 16 30 H 0.07 1.70 7.14 -51.93 -0.37 1.33 16 31 H 0.05 1.10 5.15 -51.93 -0.27 0.83 16 32 H 0.01 0.27 5.90 -51.92 -0.31 -0.04 16 33 H 0.03 0.86 7.84 -51.93 -0.41 0.46 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.09 1.70 5.64 -51.93 -0.29 1.41 16 36 H 0.11 1.94 7.88 -51.92 -0.41 1.53 16 37 H 0.15 0.52 4.98 -52.48 -0.26 0.26 16 38 H 0.15 0.19 8.06 -52.49 -0.42 -0.23 16 39 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.17 1.74 7.96 -52.49 -0.42 1.33 16 41 H 0.09 0.42 7.64 -51.93 -0.40 0.02 16 42 H 0.11 0.96 7.45 -51.93 -0.39 0.57 16 43 H 0.09 0.42 6.48 -51.93 -0.34 0.08 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -34.15 355.59 -11.75 -45.90 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.22 Total: -0.56 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -3.46 Total: 4.17 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.77 Total: -58.65 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -2.64 Total: -12.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.15 -11.75 -45.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125327856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.774 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds