Wall clock time and date at job start Tue Mar 31 2020 18:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47031 * 2 1 4 4 C 1.46901 * 110.99918 * 301.69437 * 3 2 1 5 5 C 1.50696 * 109.47377 * 289.30040 * 4 3 2 6 6 H 1.07995 * 120.00374 * 4.29536 * 5 4 3 7 7 C 1.37876 * 119.99967 * 184.30285 * 5 4 3 8 8 N 1.31517 * 120.00101 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00289 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47069 * 59.99845 * 9 7 5 11 11 H 1.48495 * 109.47639 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46860 * 300.00243 * 9 7 5 13 13 C 1.46896 * 110.99955 * 65.65134 * 3 2 1 14 14 N 1.46503 * 109.47092 * 66.04938 * 13 3 2 15 15 N 1.40152 * 126.24810 * 90.02538 * 14 13 3 16 16 C 1.30344 * 108.04120 * 179.97438 * 15 14 13 17 17 C 1.47979 * 125.73317 * 179.97438 * 16 15 14 18 18 C 1.39937 * 120.55576 * 160.70914 * 17 16 15 19 19 C 1.38375 * 118.29722 * 179.72598 * 18 17 16 20 20 C 1.38333 * 119.30183 * 0.02562 * 19 18 17 21 21 N 1.31912 * 121.06516 * 359.97438 * 20 19 18 22 22 C 1.31715 * 121.87015 * 359.97438 * 21 20 19 23 23 N 1.38088 * 108.53993 * 0.26150 * 16 15 14 24 24 C 1.46499 * 125.86938 * 179.69802 * 23 16 15 25 25 C 1.34794 * 108.27237 * 359.56429 * 23 16 15 26 26 S 1.71198 * 126.18333 * 180.15775 * 25 23 16 27 27 H 1.09003 * 109.46795 * 67.55149 * 1 2 3 28 28 H 1.08991 * 109.47045 * 187.55242 * 1 2 3 29 29 H 1.08994 * 109.47225 * 307.55495 * 1 2 3 30 30 H 1.09003 * 109.47269 * 240.00277 * 2 1 3 31 31 H 1.09000 * 109.47440 * 119.99839 * 2 1 3 32 32 H 1.09008 * 109.46897 * 49.29931 * 4 3 2 33 33 H 1.08997 * 109.47350 * 169.29327 * 4 3 2 34 34 H 0.96995 * 120.00448 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47169 * 306.04226 * 13 3 2 36 36 H 1.09008 * 109.46705 * 186.04647 * 13 3 2 37 37 H 1.08005 * 120.84572 * 359.75351 * 18 17 16 38 38 H 1.07997 * 120.34708 * 180.02562 * 19 18 17 39 39 H 1.07994 * 119.46705 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.71245 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.46690 * 83.81097 * 24 23 16 42 42 H 1.08999 * 109.47799 * 203.81430 * 24 23 16 43 43 H 1.09002 * 109.47078 * 323.81810 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5158 2.1215 -1.1669 5 6 2.1897 1.6093 -2.4137 6 1 2.8671 0.7702 -2.3555 7 6 1.9416 2.2119 -3.6287 8 7 1.1164 3.2336 -3.6996 9 14 2.7774 1.5774 -5.1740 10 1 2.3999 0.1581 -5.3938 11 1 2.3458 2.3901 -6.3396 12 1 4.2506 1.6792 -5.0173 13 6 1.6621 2.0698 1.2494 14 7 2.3749 1.4482 2.3683 15 7 3.6373 1.8159 2.8534 16 6 3.9299 1.0317 3.8526 17 6 5.1742 1.0783 4.6521 18 6 5.2276 0.4886 5.9200 19 6 6.4167 0.5548 6.6247 20 6 7.5041 1.1960 6.0590 21 7 7.4244 1.7431 4.8614 22 6 6.3153 1.7052 4.1519 23 7 2.8865 0.1459 4.0357 24 6 2.8225 -0.9067 5.0526 25 6 1.9355 0.4179 3.1199 26 16 0.4432 -0.4012 2.9386 27 1 -0.3633 0.3924 -0.9498 28 1 -0.3633 -1.0187 0.1351 29 1 -0.3633 0.6263 0.8146 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.4386 1.9768 -1.2505 33 1 1.7315 3.1833 -1.0474 34 1 0.9415 3.6573 -4.5544 35 1 0.5875 1.9891 1.4133 36 1 1.9410 3.1213 1.1801 37 1 4.3630 -0.0059 6.3377 38 1 6.4949 0.1105 7.6059 39 1 8.4333 1.2496 6.6068 40 1 6.2890 2.1643 3.1747 41 1 2.4652 -0.4835 5.9914 42 1 2.1390 -1.6892 4.7233 43 1 3.8159 -1.3304 5.2000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125327856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:14 Heat of formation + Delta-G solvation = 135.245054 kcal Electronic energy + Delta-G solvation = -26228.531563 eV Core-core repulsion = 22630.299595 eV Total energy + Delta-G solvation = -3598.231968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.91284 -41.11784 -39.32107 -36.55861 -34.93088 -34.57720 -33.42600 -31.99982 -31.19790 -29.72766 -28.55548 -26.80470 -25.39778 -25.04652 -24.87333 -23.80690 -22.49997 -21.50533 -19.20014 -18.44250 -18.28461 -18.15285 -17.91028 -17.41388 -16.99926 -16.77404 -16.64763 -16.44564 -15.98326 -15.04292 -14.96278 -14.87772 -14.59955 -14.36584 -14.30867 -13.70981 -13.65352 -13.26451 -13.19234 -13.01707 -12.90467 -12.85504 -12.61185 -12.60314 -12.51332 -12.28620 -11.94548 -11.75018 -11.52397 -11.36061 -10.95357 -10.61903 -10.60350 -10.17266 -9.24540 -8.89316 -8.64372 -8.20957 -6.29710 -0.62055 -0.13983 0.12556 0.14377 0.88400 0.99370 1.30028 1.40273 1.42615 1.50550 2.39162 2.65364 2.77578 3.03354 3.08445 3.18685 3.47008 3.49503 3.67559 3.78016 3.89884 4.04265 4.13805 4.21019 4.22265 4.32834 4.40434 4.50436 4.61962 4.68992 4.71547 4.78579 4.89765 4.92209 5.00672 5.05972 5.18100 5.24712 5.32097 5.51343 5.54744 5.61701 5.90642 5.96891 6.18983 6.40028 6.81127 6.83023 7.38097 8.89316 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003327 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.965860 B = 8412.989544 C = 9952.866243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 N -0.551 5.551 4 C 0.213 3.787 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.271 1.271 13 C 0.305 3.695 14 N -0.357 5.357 15 N -0.281 5.281 16 C 0.322 3.678 17 C -0.102 4.102 18 C -0.047 4.047 19 C -0.152 4.152 20 C 0.118 3.882 21 N -0.508 5.508 22 C 0.142 3.858 23 N -0.482 5.482 24 C 0.060 3.940 25 C 0.461 3.539 26 S -0.626 6.626 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.060 0.940 32 H -0.007 1.007 33 H 0.014 0.986 34 H 0.266 0.734 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.195 0.805 40 H 0.152 0.848 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.525 -7.150 27.502 30.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.056 4.056 3 N -0.277 5.277 4 C 0.087 3.913 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.196 1.196 13 C 0.095 3.905 14 N -0.148 5.148 15 N -0.102 5.102 16 C 0.045 3.955 17 C -0.108 4.108 18 C -0.074 4.074 19 C -0.171 4.171 20 C -0.039 4.039 21 N -0.216 5.216 22 C -0.017 4.017 23 N -0.182 5.182 24 C -0.078 4.078 25 C 0.098 3.902 26 S -0.499 6.499 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.011 0.989 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.191 0.809 38 H 0.208 0.792 39 H 0.212 0.788 40 H 0.170 0.830 41 H 0.137 0.863 42 H 0.123 0.877 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.061 -6.259 26.207 29.520 hybrid contribution -1.067 -0.439 -0.666 1.332 sum 10.994 -6.698 25.541 28.602 Atomic orbital electron populations 1.22131 0.96892 1.02130 0.99941 1.21948 0.94221 0.89064 1.00358 1.62211 1.60517 1.03514 1.01435 1.19408 0.93396 0.92474 0.86003 1.21266 1.26541 1.15839 0.92265 0.92753 1.25765 0.95921 0.95123 1.02179 1.70040 1.36835 1.23319 1.26704 0.85514 0.78892 0.78400 0.78283 1.19605 1.20544 1.19602 1.22299 0.93574 0.95410 0.79219 1.49549 1.12649 1.26062 1.26523 1.77629 0.97895 1.22928 1.11721 1.22829 0.91025 0.87909 0.93735 1.18508 0.88788 1.07363 0.96135 1.22311 1.00786 0.93913 0.90426 1.22587 0.91742 0.99752 1.02983 1.23784 1.00588 0.89573 0.89917 1.67878 1.26001 1.18900 1.08811 1.22888 0.86778 0.92740 0.99310 1.46375 1.12825 1.29861 1.29094 1.22927 1.07263 0.88577 0.89075 1.23706 0.93735 0.87658 0.85125 1.93428 1.08999 1.61627 1.85802 0.94999 0.92480 0.91473 0.92740 0.92122 0.98906 0.96777 0.92558 0.89191 0.86834 0.80857 0.79214 0.78835 0.83048 0.86257 0.87684 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.37 7.63 71.98 0.55 -5.82 16 2 C 0.07 3.14 5.37 86.30 0.46 3.60 16 3 N -0.55 -24.94 4.81 -913.14 -4.39 -29.32 16 4 C 0.21 11.23 4.53 85.56 0.39 11.62 16 5 C -0.52 -29.87 8.67 25.60 0.22 -29.65 16 6 H 0.05 3.13 7.27 -2.91 -0.02 3.11 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 9 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.31 11.75 5.83 170.81 1.00 12.74 16 14 N -0.36 -12.28 3.58 -359.60 -1.29 -13.57 16 15 N -0.28 -8.69 12.33 -50.84 -0.63 -9.32 16 16 C 0.32 7.41 7.66 136.34 1.04 8.46 16 17 C -0.10 -1.65 5.87 -19.99 -0.12 -1.76 16 18 C -0.05 -0.33 8.69 22.71 0.20 -0.14 16 19 C -0.15 -0.51 10.10 22.33 0.23 -0.29 16 20 C 0.12 0.95 11.17 84.70 0.95 1.90 16 21 N -0.51 -8.54 10.35 -194.81 -2.02 -10.56 16 22 C 0.14 2.70 10.86 85.01 0.92 3.62 16 23 N -0.48 -10.73 3.16 -541.70 -1.71 -12.44 16 24 C 0.06 0.66 9.14 127.77 1.17 1.83 16 25 C 0.46 14.54 6.61 179.01 1.18 15.72 16 26 S -0.63 -22.52 24.56 -56.49 -1.39 -23.91 16 27 H 0.03 1.45 6.58 -2.39 -0.02 1.43 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.78 4.60 -2.39 -0.01 2.77 16 30 H 0.05 2.56 7.14 -2.39 -0.02 2.54 16 31 H 0.06 2.56 5.15 -2.39 -0.01 2.54 16 32 H -0.01 -0.37 5.90 -2.38 -0.01 -0.39 16 33 H 0.01 0.79 7.84 -2.39 -0.02 0.77 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 35 H 0.09 3.49 5.64 -2.39 -0.01 3.47 16 36 H 0.11 4.22 7.88 -2.38 -0.02 4.21 16 37 H 0.17 0.19 4.98 -2.91 -0.01 0.18 16 38 H 0.19 -0.93 8.06 -2.91 -0.02 -0.95 16 39 H 0.19 0.26 8.06 -2.91 -0.02 0.23 16 40 H 0.15 3.32 7.96 -2.91 -0.02 3.30 16 41 H 0.12 0.59 7.64 -2.39 -0.02 0.57 16 42 H 0.10 1.50 7.45 -2.39 -0.02 1.48 16 43 H 0.13 0.54 6.48 -2.39 -0.02 0.52 16 Total: -1.00 -78.05 355.59 0.60 -77.45 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.05 Total: 7.01 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 8.65 Total: 22.79 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -9.74 Total: -130.45 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -22.52 SS G_CDS: -1.39 Total: -23.91 kcal Total: -78.05 0.60 -77.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125327856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.697 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds