Wall clock time and date at job start Tue Mar 31 2020 17:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 110.66175 * 2 1 4 4 C 1.54231 * 110.60989 * 237.06737 * 2 1 3 5 5 C 1.51307 * 103.55804 * 241.48507 * 4 2 1 6 6 O 1.21222 * 125.40015 * 180.02562 * 5 4 2 7 7 N 1.33881 * 109.20637 * 359.97438 * 5 4 2 8 8 C 1.46502 * 122.76053 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47089 * 90.02631 * 8 7 5 10 10 H 1.09000 * 109.47340 * 59.99815 * 9 8 7 11 11 O 1.42896 * 109.47220 * 299.99482 * 9 8 7 12 12 C 1.53009 * 109.46827 * 179.97438 * 9 8 7 13 13 O 1.42899 * 109.46536 * 184.99858 * 12 9 8 14 14 C 1.35679 * 116.99430 * 180.02562 * 13 12 9 15 15 C 1.39312 * 119.81975 * 359.72508 * 14 13 12 16 16 C 1.36432 * 120.18626 * 179.75729 * 15 14 13 17 17 C 1.40838 * 119.81342 * 0.51817 * 16 15 14 18 18 C 1.41210 * 120.18402 * 179.76208 * 17 16 15 19 19 H 1.08000 * 119.99603 * 330.13496 * 18 17 16 20 20 C 1.39887 * 120.00302 * 150.14302 * 18 17 16 21 21 N 1.30879 * 120.00545 * 161.71633 * 20 18 17 22 22 Si 1.86804 * 119.99719 * 341.71042 * 20 18 17 23 23 H 1.48503 * 109.46738 * 95.41928 * 22 20 18 24 24 H 1.48504 * 109.47157 * 215.41773 * 22 20 18 25 25 H 1.48503 * 109.47268 * 335.41989 * 22 20 18 26 26 C 1.40841 * 119.63651 * 359.73589 * 17 16 15 27 27 C 1.36438 * 119.81215 * 0.02562 * 26 17 16 28 28 C 1.33874 * 114.47426 * 0.27043 * 7 5 4 29 29 O 1.21228 * 125.39716 * 179.71197 * 28 7 5 30 30 H 1.08998 * 109.47034 * 182.93250 * 1 2 3 31 31 H 1.08993 * 109.46699 * 302.93058 * 1 2 3 32 32 H 1.08994 * 109.46929 * 62.93150 * 1 2 3 33 33 H 1.09000 * 110.60557 * 122.96174 * 4 2 1 34 34 H 1.09007 * 110.73306 * 0.06776 * 4 2 1 35 35 H 1.09000 * 109.47181 * 330.02347 * 8 7 5 36 36 H 1.09007 * 109.46736 * 210.02680 * 8 7 5 37 37 H 0.96695 * 113.99999 * 300.00459 * 11 9 8 38 38 H 1.08999 * 109.46667 * 304.99796 * 12 9 8 39 39 H 1.08994 * 109.46627 * 65.00065 * 12 9 8 40 40 H 1.08003 * 119.90542 * 359.97438 * 15 14 13 41 41 H 1.08004 * 120.09638 * 180.25055 * 16 15 14 42 42 H 0.96994 * 120.00601 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.09171 * 180.02562 * 26 17 16 44 44 H 1.07999 * 119.90408 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0200 0.0000 4 6 2.0729 -0.7848 -1.2116 5 6 2.8550 -1.9157 -0.5802 6 8 3.4530 -2.7794 -1.1851 7 7 2.7830 -1.8107 0.7526 8 6 3.4382 -2.7569 1.6589 9 6 4.8522 -2.2652 1.9744 10 1 4.7988 -1.2853 2.4488 11 8 5.6040 -2.1676 0.7631 12 6 5.5363 -3.2532 2.9216 13 8 6.8114 -2.7370 3.3084 14 6 7.5531 -3.4971 4.1528 15 6 7.0556 -4.7174 4.6044 16 6 7.7972 -5.4900 5.4497 17 6 9.0644 -5.0457 5.8743 18 6 9.8365 -5.8367 6.7530 19 1 9.3485 -6.4867 7.4643 20 6 11.2332 -5.7785 6.7024 21 7 11.9433 -6.2100 7.7136 22 14 12.0849 -5.0848 5.1915 23 1 12.3955 -3.6497 5.4136 24 1 13.3447 -5.8319 4.9466 25 1 11.1914 -5.2213 4.0132 26 6 9.5577 -3.8082 5.4171 27 6 8.8054 -3.0499 4.5682 28 6 2.0586 -0.7728 1.1887 29 8 1.8595 -0.4947 2.3518 30 1 -0.3633 -1.0263 0.0526 31 1 -0.3632 0.5586 0.8625 32 1 -0.3633 0.4676 -0.9151 33 1 2.7275 -0.1553 -1.8144 34 1 1.2545 -1.1753 -1.8166 35 1 3.4917 -3.7368 1.1846 36 1 2.8647 -2.8314 2.5830 37 1 5.6925 -3.0044 0.2867 38 1 4.9175 -3.3947 3.8077 39 1 5.6697 -4.2090 2.4150 40 1 6.0816 -5.0545 4.2817 41 1 7.4118 -6.4378 5.7957 42 1 12.9118 -6.1692 7.6787 43 1 10.5286 -3.4605 5.7377 44 1 9.1824 -2.1010 4.2164 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176627764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:07 Heat of formation + Delta-G solvation = -134.147755 kcal Electronic energy + Delta-G solvation = -27899.554121 eV Core-core repulsion = 23782.302032 eV Total energy + Delta-G solvation = -4117.252090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.39653 -39.25582 -38.95203 -37.73438 -36.34640 -36.23464 -34.67176 -33.35339 -31.23694 -30.03500 -29.78842 -28.71060 -26.55882 -25.06536 -24.47173 -22.68931 -22.19003 -21.12950 -20.65365 -19.93718 -18.02210 -17.58508 -17.44716 -17.11942 -16.80993 -16.28629 -16.05579 -15.35188 -15.27294 -14.98985 -14.67384 -14.51889 -14.32755 -14.28379 -14.00652 -13.62289 -13.39182 -13.08140 -12.98066 -12.77245 -12.45771 -12.42705 -12.21487 -12.12869 -11.86000 -11.82210 -11.46122 -11.07075 -10.97318 -10.83256 -10.58468 -10.37467 -10.25461 -10.18048 -9.96057 -9.81036 -9.50111 -9.08340 -7.92922 -7.21431 -6.91845 -4.39131 1.12996 2.02249 2.31141 2.56479 2.58704 3.12860 3.22569 3.34005 3.53342 3.62378 3.76062 3.86169 4.00263 4.17672 4.23776 4.47753 4.55602 4.65747 4.69413 4.84777 4.90624 4.94563 5.00431 5.08359 5.16181 5.20927 5.27842 5.37975 5.43657 5.50696 5.76751 5.81216 5.97986 6.38878 6.40779 6.57624 6.75211 6.91541 6.95153 7.23004 7.35441 7.37210 7.47989 7.52073 7.79057 7.91297 8.26532 8.38582 8.67598 8.82079 10.11090 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.002138 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.634954 B =13093.388440 C =13396.161891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 H 0.126 0.874 4 C -0.155 4.155 5 C 0.532 3.468 6 O -0.477 6.477 7 N -0.565 5.565 8 C 0.067 3.933 9 C 0.097 3.903 10 H 0.111 0.889 11 O -0.546 6.546 12 C 0.041 3.959 13 O -0.315 6.315 14 C -0.012 4.012 15 C -0.156 4.156 16 C -0.179 4.179 17 C 0.071 3.929 18 C -0.449 4.449 19 H 0.089 0.911 20 C 0.083 3.917 21 N -0.812 5.812 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.245 1.245 26 C -0.207 4.207 27 C -0.095 4.095 28 C 0.528 3.472 29 O -0.476 6.476 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.378 0.622 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.284 0.716 43 H 0.108 0.892 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.171 10.341 -17.562 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 H 0.144 0.856 4 C -0.194 4.194 5 C 0.321 3.679 6 O -0.348 6.348 7 N -0.308 5.308 8 C -0.054 4.054 9 C 0.037 3.963 10 H 0.129 0.871 11 O -0.351 6.351 12 C -0.037 4.037 13 O -0.230 6.230 14 C -0.055 4.055 15 C -0.175 4.175 16 C -0.199 4.199 17 C 0.068 3.932 18 C -0.478 4.478 19 H 0.107 0.893 20 C -0.135 4.135 21 N -0.437 5.437 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.218 1.218 25 H -0.168 1.168 26 C -0.227 4.227 27 C -0.113 4.113 28 C 0.317 3.683 29 O -0.347 6.347 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.624 10.707 -16.968 28.773 hybrid contribution 0.431 -0.653 -0.419 0.888 sum -20.192 10.054 -17.387 28.480 Atomic orbital electron populations 1.21704 0.90754 1.03177 1.03862 1.22081 0.99293 1.01546 0.91863 0.85573 1.22617 1.01944 0.96248 0.98623 1.20741 0.79488 0.86147 0.81511 1.90765 1.40925 1.36778 1.66322 1.46588 1.46916 1.27902 1.09405 1.22424 0.94627 0.92989 0.95391 1.22220 0.87699 1.00941 0.85486 0.87135 1.86610 1.75025 1.37520 1.35945 1.23022 0.86066 0.96517 0.98049 1.85886 1.28178 1.45989 1.62968 1.18522 0.93665 0.93410 0.99879 1.20536 0.99368 0.95277 1.02333 1.20626 0.97363 0.99604 1.02305 1.17731 0.92700 0.91420 0.91300 1.19363 0.90716 1.21929 1.15783 0.89260 1.26126 0.97878 0.92521 0.96964 1.69716 1.08308 1.36486 1.29159 0.86364 0.78166 0.78592 0.83419 1.19612 1.21791 1.16798 1.20668 1.00712 0.96291 1.05000 1.19692 0.92475 0.99591 0.99590 1.20870 0.76661 0.80095 0.90698 1.90796 1.56449 1.68196 1.19213 0.91977 0.90806 0.90463 0.85948 0.86085 0.88063 0.87475 0.77456 0.91861 0.92366 0.88291 0.87849 0.90547 0.87469 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.45 9.09 37.16 0.34 -0.11 16 2 C -0.13 -0.59 3.70 -90.82 -0.34 -0.92 16 3 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 4 C -0.15 -0.65 6.67 -26.94 -0.18 -0.83 16 5 C 0.53 4.53 7.57 -11.09 -0.08 4.45 16 6 O -0.48 -5.47 17.05 5.61 0.10 -5.38 16 7 N -0.57 -5.08 2.49 -115.34 -0.29 -5.37 16 8 C 0.07 0.64 5.25 -4.04 -0.02 0.61 16 9 C 0.10 1.18 3.52 -26.73 -0.09 1.09 16 10 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 11 O -0.55 -7.32 12.41 -41.74 -0.52 -7.84 16 12 C 0.04 0.58 4.37 37.16 0.16 0.74 16 13 O -0.31 -6.11 10.09 -23.58 -0.24 -6.35 16 14 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 15 C -0.16 -3.30 8.96 -39.83 -0.36 -3.65 16 16 C -0.18 -4.18 9.74 -39.25 -0.38 -4.56 16 17 C 0.07 1.83 5.10 -106.80 -0.55 1.29 16 18 C -0.45 -12.25 9.56 -37.84 -0.36 -12.61 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.08 2.21 5.40 -17.34 -0.09 2.12 16 21 N -0.81 -21.88 13.93 55.54 0.77 -21.11 16 22 Si 0.91 21.12 24.51 -169.99 -4.17 16.95 16 23 H -0.27 -6.10 6.70 56.52 0.38 -5.72 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.24 -5.86 6.87 56.52 0.39 -5.47 16 26 C -0.21 -5.12 7.12 -39.25 -0.28 -5.40 16 27 C -0.09 -2.18 9.92 -39.83 -0.40 -2.58 16 28 C 0.53 4.65 7.40 -11.09 -0.08 4.57 16 29 O -0.48 -5.77 17.47 5.60 0.10 -5.68 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.12 0.27 7.75 -51.93 -0.40 -0.14 16 35 H 0.10 0.85 7.83 -51.93 -0.41 0.44 16 36 H 0.11 0.93 7.82 -51.93 -0.41 0.53 16 37 H 0.38 4.28 8.92 45.56 0.41 4.69 16 38 H 0.06 0.84 7.64 -51.93 -0.40 0.44 16 39 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 40 H 0.10 1.75 6.27 -52.48 -0.33 1.42 16 41 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 42 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 43 H 0.11 2.62 4.73 -52.49 -0.25 2.37 16 44 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -33.22 368.65 -6.82 -40.04 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.16 Total: 5.47 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.97 Total: -16.30 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.49 Total: -26.47 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.56 Total: -25.24 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.17 Total: 16.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.22 -6.82 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176627764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.109 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds