Wall clock time and date at job start Tue Mar 31 2020 17:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 110.66175 * 2 1 4 4 C 1.54231 * 110.60989 * 237.06737 * 2 1 3 5 5 C 1.51307 * 103.55804 * 241.48507 * 4 2 1 6 6 O 1.21222 * 125.40015 * 180.02562 * 5 4 2 7 7 N 1.33881 * 109.20637 * 359.97438 * 5 4 2 8 8 C 1.46502 * 122.76053 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47089 * 90.02631 * 8 7 5 10 10 H 1.09000 * 109.47340 * 59.99815 * 9 8 7 11 11 O 1.42896 * 109.47220 * 299.99482 * 9 8 7 12 12 C 1.53009 * 109.46827 * 179.97438 * 9 8 7 13 13 O 1.42899 * 109.46536 * 184.99858 * 12 9 8 14 14 C 1.35679 * 116.99430 * 180.02562 * 13 12 9 15 15 C 1.39312 * 119.81975 * 359.72508 * 14 13 12 16 16 C 1.36432 * 120.18626 * 179.75729 * 15 14 13 17 17 C 1.40838 * 119.81342 * 0.51817 * 16 15 14 18 18 C 1.41210 * 120.18402 * 179.76208 * 17 16 15 19 19 H 1.08000 * 119.99603 * 330.13496 * 18 17 16 20 20 C 1.39887 * 120.00302 * 150.14302 * 18 17 16 21 21 N 1.30879 * 120.00545 * 161.71633 * 20 18 17 22 22 Si 1.86804 * 119.99719 * 341.71042 * 20 18 17 23 23 H 1.48503 * 109.46738 * 95.41928 * 22 20 18 24 24 H 1.48504 * 109.47157 * 215.41773 * 22 20 18 25 25 H 1.48503 * 109.47268 * 335.41989 * 22 20 18 26 26 C 1.40841 * 119.63651 * 359.73589 * 17 16 15 27 27 C 1.36438 * 119.81215 * 0.02562 * 26 17 16 28 28 C 1.33874 * 114.47426 * 0.27043 * 7 5 4 29 29 O 1.21228 * 125.39716 * 179.71197 * 28 7 5 30 30 H 1.08998 * 109.47034 * 182.93250 * 1 2 3 31 31 H 1.08993 * 109.46699 * 302.93058 * 1 2 3 32 32 H 1.08994 * 109.46929 * 62.93150 * 1 2 3 33 33 H 1.09000 * 110.60557 * 122.96174 * 4 2 1 34 34 H 1.09007 * 110.73306 * 0.06776 * 4 2 1 35 35 H 1.09000 * 109.47181 * 330.02347 * 8 7 5 36 36 H 1.09007 * 109.46736 * 210.02680 * 8 7 5 37 37 H 0.96695 * 113.99999 * 300.00459 * 11 9 8 38 38 H 1.08999 * 109.46667 * 304.99796 * 12 9 8 39 39 H 1.08994 * 109.46627 * 65.00065 * 12 9 8 40 40 H 1.08003 * 119.90542 * 359.97438 * 15 14 13 41 41 H 1.08004 * 120.09638 * 180.25055 * 16 15 14 42 42 H 0.96994 * 120.00601 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.09171 * 180.02562 * 26 17 16 44 44 H 1.07999 * 119.90408 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0200 0.0000 4 6 2.0729 -0.7848 -1.2116 5 6 2.8550 -1.9157 -0.5802 6 8 3.4530 -2.7794 -1.1851 7 7 2.7830 -1.8107 0.7526 8 6 3.4382 -2.7569 1.6589 9 6 4.8522 -2.2652 1.9744 10 1 4.7988 -1.2853 2.4488 11 8 5.6040 -2.1676 0.7631 12 6 5.5363 -3.2532 2.9216 13 8 6.8114 -2.7370 3.3084 14 6 7.5531 -3.4971 4.1528 15 6 7.0556 -4.7174 4.6044 16 6 7.7972 -5.4900 5.4497 17 6 9.0644 -5.0457 5.8743 18 6 9.8365 -5.8367 6.7530 19 1 9.3485 -6.4867 7.4643 20 6 11.2332 -5.7785 6.7024 21 7 11.9433 -6.2100 7.7136 22 14 12.0849 -5.0848 5.1915 23 1 12.3955 -3.6497 5.4136 24 1 13.3447 -5.8319 4.9466 25 1 11.1914 -5.2213 4.0132 26 6 9.5577 -3.8082 5.4171 27 6 8.8054 -3.0499 4.5682 28 6 2.0586 -0.7728 1.1887 29 8 1.8595 -0.4947 2.3518 30 1 -0.3633 -1.0263 0.0526 31 1 -0.3632 0.5586 0.8625 32 1 -0.3633 0.4676 -0.9151 33 1 2.7275 -0.1553 -1.8144 34 1 1.2545 -1.1753 -1.8166 35 1 3.4917 -3.7368 1.1846 36 1 2.8647 -2.8314 2.5830 37 1 5.6925 -3.0044 0.2867 38 1 4.9175 -3.3947 3.8077 39 1 5.6697 -4.2090 2.4150 40 1 6.0816 -5.0545 4.2817 41 1 7.4118 -6.4378 5.7957 42 1 12.9118 -6.1692 7.6787 43 1 10.5286 -3.4605 5.7377 44 1 9.1824 -2.1010 4.2164 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176627764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:05 Heat of formation + Delta-G solvation = -157.880722 kcal Electronic energy + Delta-G solvation = -27900.583260 eV Core-core repulsion = 23782.302032 eV Total energy + Delta-G solvation = -4118.281229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.03217 -40.81725 -39.69176 -39.03792 -37.78990 -36.97500 -35.29292 -35.24763 -32.38170 -31.78775 -31.40779 -29.29720 -27.52472 -26.36323 -25.56979 -23.93796 -22.73572 -22.58987 -22.46382 -20.62328 -19.42508 -19.14441 -18.42452 -18.13768 -17.62222 -17.26764 -17.16983 -16.98360 -16.26082 -15.96348 -15.77376 -15.57327 -15.36347 -15.28693 -15.00660 -14.88785 -14.73515 -14.43591 -14.19493 -13.86663 -13.73193 -13.62106 -13.29051 -13.19549 -12.78619 -12.69931 -12.55596 -12.41886 -12.15859 -12.12399 -12.01967 -11.73998 -11.64098 -11.40984 -11.28368 -11.02937 -10.96440 -10.68941 -9.74952 -9.05470 -8.88808 -6.40738 0.48415 0.71981 0.73885 1.25631 1.36267 1.37835 1.47442 1.68753 2.11394 2.38927 2.55920 3.07615 3.22203 3.27125 3.44151 3.49043 3.63427 3.71632 3.78637 3.96954 4.08242 4.13979 4.17856 4.29428 4.32720 4.37730 4.46290 4.59495 4.67260 4.70840 4.75902 4.80592 4.91772 4.97352 5.01080 5.13094 5.30761 5.37540 5.50948 5.68432 5.76532 5.85612 6.06376 6.28388 6.28990 6.52992 6.57743 6.71588 6.78371 6.89428 8.20065 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.002138 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.634954 B =13093.388440 C =13396.161891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 H 0.144 0.856 4 C -0.142 4.142 5 C 0.525 3.475 6 O -0.511 6.511 7 N -0.571 5.571 8 C 0.069 3.931 9 C 0.107 3.893 10 H 0.094 0.906 11 O -0.560 6.560 12 C 0.031 3.969 13 O -0.327 6.327 14 C 0.010 3.990 15 C -0.154 4.154 16 C -0.183 4.183 17 C 0.046 3.954 18 C -0.483 4.483 19 H 0.058 0.942 20 C 0.047 3.953 21 N -0.852 5.852 22 Si 0.959 3.041 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.256 1.256 26 C -0.213 4.213 27 C -0.113 4.113 28 C 0.522 3.478 29 O -0.517 6.517 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.386 0.614 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.292 0.708 43 H 0.105 0.895 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.387 11.889 -20.712 33.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.162 0.838 4 C -0.181 4.181 5 C 0.317 3.683 6 O -0.384 6.384 7 N -0.313 5.313 8 C -0.053 4.053 9 C 0.047 3.953 10 H 0.112 0.888 11 O -0.367 6.367 12 C -0.045 4.045 13 O -0.243 6.243 14 C -0.034 4.034 15 C -0.172 4.172 16 C -0.202 4.202 17 C 0.044 3.956 18 C -0.513 4.513 19 H 0.077 0.923 20 C -0.166 4.166 21 N -0.479 5.479 22 Si 0.783 3.217 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.180 1.180 26 C -0.232 4.232 27 C -0.132 4.132 28 C 0.313 3.687 29 O -0.390 6.390 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.235 0.765 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.122 0.878 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.863 12.264 -20.136 32.842 hybrid contribution 0.856 -1.044 0.439 1.419 sum -22.007 11.220 -19.697 31.594 Atomic orbital electron populations 1.21742 0.89476 1.03230 1.04847 1.22182 1.00135 1.01715 0.89672 0.83790 1.22734 1.02367 0.94535 0.98416 1.21522 0.79030 0.86561 0.81193 1.90749 1.42544 1.38364 1.66754 1.46783 1.46733 1.27929 1.09811 1.22331 0.92966 0.93703 0.96267 1.22091 0.88907 0.99688 0.84636 0.88782 1.86583 1.75418 1.38422 1.36316 1.23411 0.84009 0.97831 0.99286 1.85892 1.30131 1.46206 1.62034 1.18705 0.93218 0.93155 0.98332 1.20868 1.00716 0.94553 1.01094 1.20870 0.96716 1.00367 1.02274 1.17889 0.93856 0.91882 0.92002 1.19337 0.91628 1.23316 1.17021 0.92337 1.26740 0.98055 0.92834 0.99014 1.69740 1.09002 1.38592 1.30551 0.85576 0.77475 0.78725 0.79896 1.18497 1.20223 1.17980 1.20722 1.00991 0.96162 1.05366 1.19941 0.93212 1.00316 0.99731 1.21674 0.75852 0.79928 0.91277 1.90773 1.57920 1.69176 1.21154 0.92219 0.91820 0.87690 0.83918 0.83406 0.86852 0.86875 0.76488 0.90329 0.90627 0.84277 0.86896 0.89715 0.87779 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.45 9.09 71.98 0.65 0.20 16 2 C -0.12 -0.71 3.70 -10.93 -0.04 -0.75 16 3 H 0.14 0.44 8.14 -2.38 -0.02 0.42 16 4 C -0.14 -0.65 6.67 30.46 0.20 -0.45 16 5 C 0.53 7.72 7.57 87.99 0.67 8.38 16 6 O -0.51 -10.77 17.05 -2.85 -0.05 -10.82 16 7 N -0.57 -9.20 2.49 -756.66 -1.89 -11.08 16 8 C 0.07 1.18 5.25 86.38 0.45 1.64 16 9 C 0.11 2.42 3.52 30.60 0.11 2.53 16 10 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 11 O -0.56 -14.04 12.41 -142.76 -1.77 -15.82 16 12 C 0.03 0.79 4.37 71.99 0.31 1.11 16 13 O -0.33 -11.87 10.09 -85.34 -0.86 -12.73 16 14 C 0.01 0.41 6.71 22.79 0.15 0.56 16 15 C -0.15 -6.09 8.96 22.11 0.20 -5.89 16 16 C -0.18 -8.39 9.74 22.48 0.22 -8.17 16 17 C 0.05 2.39 5.10 -21.28 -0.11 2.29 16 18 C -0.48 -27.47 9.56 23.40 0.22 -27.25 16 19 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 20 C 0.05 2.59 5.40 85.23 0.46 3.05 16 21 N -0.85 -47.53 13.93 21.82 0.30 -47.22 16 22 Si 0.96 43.95 24.51 68.60 1.68 45.63 16 23 H -0.26 -11.31 6.70 99.48 0.67 -10.64 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -12.05 6.87 99.48 0.68 -11.36 16 26 C -0.21 -10.47 7.12 22.49 0.16 -10.31 16 27 C -0.11 -5.06 9.92 22.11 0.22 -4.84 16 28 C 0.52 8.32 7.40 87.99 0.65 8.97 16 29 O -0.52 -12.17 17.47 -2.87 -0.05 -12.22 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.15 -0.03 7.75 -2.38 -0.02 -0.05 16 35 H 0.11 1.65 7.83 -2.39 -0.02 1.63 16 36 H 0.11 1.78 7.82 -2.38 -0.02 1.76 16 37 H 0.39 8.05 8.92 -74.06 -0.66 7.39 16 38 H 0.08 1.82 7.64 -2.39 -0.02 1.80 16 39 H 0.08 1.72 7.66 -2.39 -0.02 1.70 16 40 H 0.14 4.34 6.27 -2.91 -0.02 4.32 16 41 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 43 H 0.10 5.09 4.73 -2.91 -0.01 5.08 16 44 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -74.36 368.65 2.22 -72.15 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.32 Total: 21.05 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.53 Total: -28.94 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -1.58 Total: -58.31 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.73 Total: -51.58 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.68 Total: 45.63 kcal Total: -74.36 2.22 -72.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176627764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.735 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds