Wall clock time and date at job start Tue Mar 31 2020 17:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.54391 * 2 1 4 4 C 1.54229 * 110.60872 * 122.84576 * 2 1 3 5 5 C 1.51317 * 103.55831 * 118.51581 * 4 2 1 6 6 O 1.21225 * 125.39734 * 180.02562 * 5 4 2 7 7 N 1.33875 * 109.20289 * 0.02562 * 5 4 2 8 8 C 1.46502 * 122.76127 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.46913 * 90.02497 * 8 7 5 10 10 H 1.08999 * 109.47355 * 304.99892 * 9 8 7 11 11 O 1.42899 * 109.47022 * 65.00472 * 9 8 7 12 12 C 1.53003 * 109.46955 * 184.99978 * 9 8 7 13 13 O 1.42894 * 109.47258 * 174.99923 * 12 9 8 14 14 C 1.35670 * 117.00623 * 180.02562 * 13 12 9 15 15 C 1.39320 * 119.81154 * 359.72815 * 14 13 12 16 16 C 1.36436 * 120.18172 * 179.75875 * 15 14 13 17 17 C 1.40830 * 119.81085 * 0.51551 * 16 15 14 18 18 C 1.41217 * 120.17858 * 179.76362 * 17 16 15 19 19 H 1.08000 * 119.99923 * 24.51827 * 18 17 16 20 20 C 1.39896 * 119.99960 * 204.51766 * 18 17 16 21 21 N 1.30880 * 120.00038 * 17.94800 * 20 18 17 22 22 Si 1.86795 * 120.00014 * 197.94068 * 20 18 17 23 23 H 1.48499 * 109.47306 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47285 * 120.00262 * 22 20 18 25 25 H 1.48501 * 109.47243 * 240.00336 * 22 20 18 26 26 C 1.40833 * 119.64429 * 359.73582 * 17 16 15 27 27 C 1.36432 * 119.81133 * 0.02562 * 26 17 16 28 28 C 1.33878 * 114.47765 * 0.26737 * 7 5 4 29 29 O 1.21226 * 125.39458 * 179.70676 * 28 7 5 30 30 H 1.09000 * 109.46915 * 297.15717 * 1 2 3 31 31 H 1.08998 * 109.47201 * 57.15067 * 1 2 3 32 32 H 1.08998 * 109.47237 * 177.15879 * 1 2 3 33 33 H 1.09001 * 110.60273 * 359.97438 * 4 2 1 34 34 H 1.09002 * 110.60833 * 237.03240 * 4 2 1 35 35 H 1.08999 * 109.47174 * 330.02578 * 8 7 5 36 36 H 1.09001 * 109.47506 * 210.02088 * 8 7 5 37 37 H 0.96697 * 114.00520 * 59.99354 * 11 9 8 38 38 H 1.09002 * 109.47303 * 295.00037 * 12 9 8 39 39 H 1.09007 * 109.46901 * 55.00239 * 12 9 8 40 40 H 1.07995 * 119.90862 * 359.97438 * 15 14 13 41 41 H 1.08000 * 120.09470 * 180.24875 * 16 15 14 42 42 H 0.97000 * 119.99998 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.09397 * 180.02562 * 26 17 16 44 44 H 1.08003 * 119.91034 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0728 -0.7830 1.2128 5 6 2.8550 -1.9149 0.5831 6 8 3.4522 -2.7782 1.1893 7 7 2.7829 -1.8118 -0.7498 8 6 3.4372 -2.7600 -1.6548 9 6 2.4778 -3.9096 -1.9695 10 1 2.1356 -4.3624 -1.0390 11 8 1.3546 -3.4072 -2.6962 12 6 3.2015 -4.9615 -2.8127 13 8 2.3437 -6.0874 -3.0086 14 6 2.8371 -7.1177 -3.7405 15 6 4.1253 -7.0401 -4.2653 16 6 4.6308 -8.0739 -4.9983 17 6 3.8424 -9.2170 -5.2329 18 6 4.3560 -10.2894 -5.9948 19 1 5.4233 -10.4391 -6.0656 20 6 3.4824 -11.1580 -6.6577 21 7 2.2422 -10.7999 -6.8734 22 14 4.0860 -12.8288 -7.2351 23 1 5.5166 -12.9911 -6.8714 24 1 3.2858 -13.8966 -6.5834 25 1 3.9354 -12.9272 -8.7092 26 6 2.5393 -9.2852 -4.7033 27 6 2.0506 -8.2448 -3.9683 28 6 2.0679 -0.7680 -1.1876 29 8 1.8789 -0.4849 -2.3510 30 1 -0.3633 0.4691 0.9144 31 1 -0.3633 0.5574 -0.8633 32 1 -0.3633 -1.0264 -0.0509 33 1 1.2528 -1.1721 1.8164 34 1 2.7275 -0.1526 1.8146 35 1 4.3348 -3.1557 -1.1795 36 1 3.7099 -2.2510 -2.5793 37 1 1.5851 -2.9894 -3.5372 38 1 3.4655 -4.5333 -3.7797 39 1 4.1073 -5.2802 -2.2968 40 1 4.7267 -6.1607 -4.0885 41 1 5.6311 -8.0139 -5.4011 42 1 1.6365 -11.4020 -7.3334 43 1 1.9285 -10.1585 -4.8784 44 1 1.0513 -8.2953 -3.5617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176627811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:17 Heat of formation + Delta-G solvation = -135.726165 kcal Electronic energy + Delta-G solvation = -27852.008274 eV Core-core repulsion = 23734.687739 eV Total energy + Delta-G solvation = -4117.320535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.33845 -39.05498 -38.90097 -37.56895 -36.25155 -36.08237 -34.60170 -33.32388 -31.11259 -29.76495 -29.07978 -28.58171 -26.46782 -25.01414 -24.57005 -22.61685 -22.03802 -20.74476 -20.64915 -19.84409 -17.90732 -17.41562 -17.29524 -16.86926 -16.73558 -16.34284 -15.97044 -15.27741 -15.21824 -14.78101 -14.60737 -14.33280 -14.16101 -14.15109 -13.95216 -13.75062 -13.32208 -12.88265 -12.87545 -12.35488 -12.32927 -12.16679 -12.08941 -11.83505 -11.76054 -11.44074 -11.33253 -11.14170 -10.91852 -10.86370 -10.64560 -10.44062 -10.30905 -9.99321 -9.83538 -9.72990 -9.34635 -9.02684 -7.64885 -7.03994 -6.72634 -4.25782 1.17813 2.07207 2.37288 2.76570 2.94723 3.08977 3.14112 3.20198 3.58317 3.72637 3.83333 3.91493 3.95417 4.25249 4.30486 4.61173 4.64018 4.74576 4.77755 4.94607 4.97413 5.02586 5.07042 5.17791 5.23640 5.29293 5.36608 5.55149 5.65756 5.66405 5.86998 6.04946 6.21900 6.46073 6.71516 6.96778 6.97291 7.10524 7.18085 7.42210 7.45227 7.54803 7.58183 7.78288 8.00463 8.19963 8.43853 8.64667 8.89704 8.98147 10.21833 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.032643 B = 0.002007 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.556042 B =13949.480985 C =14185.694874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 H 0.123 0.877 4 C -0.155 4.155 5 C 0.525 3.475 6 O -0.479 6.479 7 N -0.566 5.566 8 C 0.068 3.932 9 C 0.097 3.903 10 H 0.110 0.890 11 O -0.545 6.545 12 C 0.042 3.958 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.167 4.167 16 C -0.199 4.199 17 C 0.088 3.912 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.798 5.798 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.134 4.134 27 C -0.118 4.118 28 C 0.533 3.467 29 O -0.472 6.472 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.377 0.623 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.280 0.720 43 H 0.126 0.874 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 20.946 13.518 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 H 0.141 0.859 4 C -0.194 4.194 5 C 0.314 3.686 6 O -0.350 6.350 7 N -0.309 5.309 8 C -0.054 4.054 9 C 0.037 3.963 10 H 0.128 0.872 11 O -0.350 6.350 12 C -0.035 4.035 13 O -0.232 6.232 14 C -0.053 4.053 15 C -0.186 4.186 16 C -0.218 4.218 17 C 0.086 3.914 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.153 4.153 27 C -0.137 4.137 28 C 0.322 3.678 29 O -0.342 6.342 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.225 0.775 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.144 0.856 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.877 20.304 13.664 24.546 hybrid contribution 0.942 -0.558 -0.986 1.474 sum -0.934 19.746 12.678 23.484 Atomic orbital electron populations 1.21697 0.90562 1.03622 1.03636 1.22062 0.99547 1.01209 0.91903 0.85900 1.22633 1.01973 0.96128 0.98710 1.20871 0.79741 0.86291 0.81699 1.90811 1.41178 1.36719 1.66325 1.46614 1.48012 1.27089 1.09178 1.22441 0.96859 0.90861 0.95224 1.22216 0.86975 0.90739 0.96379 0.87247 1.86614 1.32365 1.78836 1.37194 1.22981 0.93757 0.87700 0.99103 1.85877 1.41376 1.25481 1.70441 1.18612 0.94264 0.89781 1.02680 1.20389 0.94866 0.99513 1.03844 1.20556 1.00376 0.94629 1.06269 1.17607 0.91707 0.91403 0.90716 1.19491 0.94410 1.09108 1.26247 0.90502 1.25891 0.94507 0.99586 0.94287 1.69843 1.05731 1.35582 1.31243 0.86284 0.80241 0.81719 0.78591 1.18483 1.19734 1.20080 1.20982 0.97656 0.98116 0.98540 1.19837 0.98279 0.92991 1.02572 1.20751 0.76503 0.79931 0.90628 1.90754 1.55531 1.68759 1.19166 0.90604 0.90844 0.91577 0.85912 0.86103 0.87526 0.88065 0.77523 0.92535 0.92071 0.88939 0.88722 0.90953 0.85636 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.11 37.16 0.34 -0.31 16 2 C -0.13 -0.64 3.68 -90.83 -0.33 -0.97 16 3 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.15 -0.71 6.67 -26.94 -0.18 -0.89 16 5 C 0.53 4.82 8.08 -11.08 -0.09 4.73 16 6 O -0.48 -6.07 17.48 5.61 0.10 -5.98 16 7 N -0.57 -5.42 2.53 -115.33 -0.29 -5.71 16 8 C 0.07 0.69 5.22 -4.04 -0.02 0.67 16 9 C 0.10 1.28 3.49 -26.73 -0.09 1.18 16 10 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 11 O -0.54 -7.77 12.67 -40.51 -0.51 -8.28 16 12 C 0.04 0.65 4.36 37.16 0.16 0.81 16 13 O -0.32 -6.60 10.09 -23.56 -0.24 -6.84 16 14 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 15 C -0.17 -3.81 8.96 -39.83 -0.36 -4.16 16 16 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 17 C 0.09 2.37 5.57 -106.80 -0.60 1.78 16 18 C -0.46 -12.37 9.04 -37.83 -0.34 -12.72 16 19 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.86 10.96 55.55 0.61 -20.25 16 22 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 27 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 28 C 0.53 4.91 7.05 -11.08 -0.08 4.83 16 29 O -0.47 -5.71 17.24 5.60 0.10 -5.61 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.12 0.42 7.74 -51.93 -0.40 0.02 16 34 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.11 1.01 7.83 -51.93 -0.41 0.60 16 36 H 0.10 0.92 7.82 -51.93 -0.41 0.51 16 37 H 0.38 4.53 9.05 45.56 0.41 4.94 16 38 H 0.06 0.82 7.64 -51.93 -0.40 0.43 16 39 H 0.06 0.89 7.66 -51.92 -0.40 0.50 16 40 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 41 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 42 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 43 H 0.13 3.40 6.16 -52.49 -0.32 3.08 16 44 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -33.31 374.58 -7.86 -41.17 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.18 Total: 8.32 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.06 Total: -16.26 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.32 Total: -25.96 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.56 Total: -26.71 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.31 -7.86 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176627811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.553 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds