Wall clock time and date at job start Tue Mar 31 2020 17:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.54391 * 2 1 4 4 C 1.54229 * 110.60872 * 122.84576 * 2 1 3 5 5 C 1.51317 * 103.55831 * 118.51581 * 4 2 1 6 6 O 1.21225 * 125.39734 * 180.02562 * 5 4 2 7 7 N 1.33875 * 109.20289 * 0.02562 * 5 4 2 8 8 C 1.46502 * 122.76127 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.46913 * 90.02497 * 8 7 5 10 10 H 1.08999 * 109.47355 * 304.99892 * 9 8 7 11 11 O 1.42899 * 109.47022 * 65.00472 * 9 8 7 12 12 C 1.53003 * 109.46955 * 184.99978 * 9 8 7 13 13 O 1.42894 * 109.47258 * 174.99923 * 12 9 8 14 14 C 1.35670 * 117.00623 * 180.02562 * 13 12 9 15 15 C 1.39320 * 119.81154 * 359.72815 * 14 13 12 16 16 C 1.36436 * 120.18172 * 179.75875 * 15 14 13 17 17 C 1.40830 * 119.81085 * 0.51551 * 16 15 14 18 18 C 1.41217 * 120.17858 * 179.76362 * 17 16 15 19 19 H 1.08000 * 119.99923 * 24.51827 * 18 17 16 20 20 C 1.39896 * 119.99960 * 204.51766 * 18 17 16 21 21 N 1.30880 * 120.00038 * 17.94800 * 20 18 17 22 22 Si 1.86795 * 120.00014 * 197.94068 * 20 18 17 23 23 H 1.48499 * 109.47306 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47285 * 120.00262 * 22 20 18 25 25 H 1.48501 * 109.47243 * 240.00336 * 22 20 18 26 26 C 1.40833 * 119.64429 * 359.73582 * 17 16 15 27 27 C 1.36432 * 119.81133 * 0.02562 * 26 17 16 28 28 C 1.33878 * 114.47765 * 0.26737 * 7 5 4 29 29 O 1.21226 * 125.39458 * 179.70676 * 28 7 5 30 30 H 1.09000 * 109.46915 * 297.15717 * 1 2 3 31 31 H 1.08998 * 109.47201 * 57.15067 * 1 2 3 32 32 H 1.08998 * 109.47237 * 177.15879 * 1 2 3 33 33 H 1.09001 * 110.60273 * 359.97438 * 4 2 1 34 34 H 1.09002 * 110.60833 * 237.03240 * 4 2 1 35 35 H 1.08999 * 109.47174 * 330.02578 * 8 7 5 36 36 H 1.09001 * 109.47506 * 210.02088 * 8 7 5 37 37 H 0.96697 * 114.00520 * 59.99354 * 11 9 8 38 38 H 1.09002 * 109.47303 * 295.00037 * 12 9 8 39 39 H 1.09007 * 109.46901 * 55.00239 * 12 9 8 40 40 H 1.07995 * 119.90862 * 359.97438 * 15 14 13 41 41 H 1.08000 * 120.09470 * 180.24875 * 16 15 14 42 42 H 0.97000 * 119.99998 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.09397 * 180.02562 * 26 17 16 44 44 H 1.08003 * 119.91034 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0728 -0.7830 1.2128 5 6 2.8550 -1.9149 0.5831 6 8 3.4522 -2.7782 1.1893 7 7 2.7829 -1.8118 -0.7498 8 6 3.4372 -2.7600 -1.6548 9 6 2.4778 -3.9096 -1.9695 10 1 2.1356 -4.3624 -1.0390 11 8 1.3546 -3.4072 -2.6962 12 6 3.2015 -4.9615 -2.8127 13 8 2.3437 -6.0874 -3.0086 14 6 2.8371 -7.1177 -3.7405 15 6 4.1253 -7.0401 -4.2653 16 6 4.6308 -8.0739 -4.9983 17 6 3.8424 -9.2170 -5.2329 18 6 4.3560 -10.2894 -5.9948 19 1 5.4233 -10.4391 -6.0656 20 6 3.4824 -11.1580 -6.6577 21 7 2.2422 -10.7999 -6.8734 22 14 4.0860 -12.8288 -7.2351 23 1 5.5166 -12.9911 -6.8714 24 1 3.2858 -13.8966 -6.5834 25 1 3.9354 -12.9272 -8.7092 26 6 2.5393 -9.2852 -4.7033 27 6 2.0506 -8.2448 -3.9683 28 6 2.0679 -0.7680 -1.1876 29 8 1.8789 -0.4849 -2.3510 30 1 -0.3633 0.4691 0.9144 31 1 -0.3633 0.5574 -0.8633 32 1 -0.3633 -1.0264 -0.0509 33 1 1.2528 -1.1721 1.8164 34 1 2.7275 -0.1526 1.8146 35 1 4.3348 -3.1557 -1.1795 36 1 3.7099 -2.2510 -2.5793 37 1 1.5851 -2.9894 -3.5372 38 1 3.4655 -4.5333 -3.7797 39 1 4.1073 -5.2802 -2.2968 40 1 4.7267 -6.1607 -4.0885 41 1 5.6311 -8.0139 -5.4011 42 1 1.6365 -11.4020 -7.3334 43 1 1.9285 -10.1585 -4.8784 44 1 1.0513 -8.2953 -3.5617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176627811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:15 Heat of formation + Delta-G solvation = -158.364905 kcal Electronic energy + Delta-G solvation = -27852.989964 eV Core-core repulsion = 23734.687739 eV Total energy + Delta-G solvation = -4118.302224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.02651 -40.68444 -39.68411 -38.94673 -37.72033 -36.97118 -35.27556 -35.20590 -32.29007 -31.48841 -30.91006 -29.29063 -27.53358 -26.47991 -25.54596 -23.83719 -22.71451 -22.53271 -22.33929 -20.59586 -19.29255 -18.99489 -18.27091 -18.07746 -17.58246 -17.34908 -17.14069 -17.00487 -16.09064 -15.88353 -15.75239 -15.56556 -15.36429 -15.27273 -14.99510 -14.69197 -14.60730 -14.12187 -13.98640 -13.78662 -13.58521 -13.34890 -13.26589 -13.05888 -12.82037 -12.70458 -12.55070 -12.44115 -12.28650 -12.12191 -11.85712 -11.70162 -11.60960 -11.40893 -11.18531 -11.01369 -10.90953 -10.68273 -9.59656 -8.96305 -8.61981 -6.25241 0.48539 0.91492 0.99464 1.35805 1.38860 1.49525 1.54390 1.70200 2.21532 2.44958 2.70129 3.07903 3.21790 3.26903 3.49519 3.64712 3.68219 3.72611 3.78144 3.97757 4.07853 4.23116 4.27859 4.30735 4.37173 4.39293 4.45407 4.66143 4.72111 4.75399 4.84263 4.96420 5.01067 5.03750 5.18436 5.25811 5.31445 5.54797 5.61258 5.76843 5.84903 6.03186 6.22981 6.29089 6.52260 6.57104 6.71355 6.77055 6.92612 7.06122 8.34966 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.032643 B = 0.002007 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.556042 B =13949.480985 C =14185.694874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.154 0.846 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.521 6.521 7 N -0.572 5.572 8 C 0.071 3.929 9 C 0.108 3.892 10 H 0.093 0.907 11 O -0.561 6.561 12 C 0.034 3.966 13 O -0.331 6.331 14 C -0.003 4.003 15 C -0.163 4.163 16 C -0.208 4.208 17 C 0.055 3.945 18 C -0.497 4.497 19 H 0.077 0.923 20 C 0.032 3.968 21 N -0.831 5.831 22 Si 0.984 3.016 23 H -0.257 1.257 24 H -0.265 1.265 25 H -0.266 1.266 26 C -0.153 4.153 27 C -0.134 4.134 28 C 0.526 3.474 29 O -0.507 6.507 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.386 0.614 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.288 0.712 43 H 0.110 0.890 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 22.883 14.691 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.135 4.135 3 H 0.172 0.828 4 C -0.179 4.179 5 C 0.311 3.689 6 O -0.395 6.395 7 N -0.314 5.314 8 C -0.051 4.051 9 C 0.048 3.952 10 H 0.111 0.889 11 O -0.368 6.368 12 C -0.043 4.043 13 O -0.247 6.247 14 C -0.047 4.047 15 C -0.182 4.182 16 C -0.228 4.228 17 C 0.053 3.947 18 C -0.527 4.527 19 H 0.095 0.905 20 C -0.182 4.182 21 N -0.458 5.458 22 Si 0.804 3.196 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.191 1.191 26 C -0.173 4.173 27 C -0.152 4.152 28 C 0.316 3.684 29 O -0.379 6.379 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.158 0.842 34 H 0.172 0.828 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.148 0.852 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.300 22.285 14.852 26.813 hybrid contribution 0.716 -0.994 -1.289 1.778 sum -0.584 21.291 13.563 25.251 Atomic orbital electron populations 1.21729 0.90225 1.02659 1.04830 1.22170 0.99549 1.02104 0.89678 0.82825 1.22761 1.02222 0.94423 0.98534 1.21713 0.79121 0.86688 0.81415 1.90792 1.43140 1.38640 1.66908 1.46819 1.48023 1.27008 1.09542 1.22321 0.96213 0.90267 0.96310 1.22089 0.87078 0.91095 0.94979 0.88945 1.86585 1.33258 1.78993 1.37917 1.23351 0.93949 0.86450 1.00524 1.85862 1.42970 1.26181 1.69721 1.18684 0.94183 0.89943 1.01847 1.20704 0.94850 1.00154 1.02492 1.20817 1.00867 0.94552 1.06522 1.17973 0.92394 0.92675 0.91679 1.19741 0.94784 1.10541 1.27610 0.90465 1.26779 0.94454 1.03090 0.93914 1.69898 1.06942 1.37118 1.31819 0.85138 0.79678 0.76415 0.78323 1.18092 1.19008 1.19119 1.20896 0.97927 0.98441 0.99992 1.20000 0.99018 0.93513 1.02714 1.21570 0.75689 0.79775 0.91330 1.90734 1.56687 1.69614 1.20890 0.87560 0.91737 0.93400 0.84208 0.82793 0.86791 0.86901 0.76504 0.91069 0.90713 0.85199 0.87422 0.90181 0.87204 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.11 71.98 0.66 -0.29 16 2 C -0.11 -0.80 3.68 -10.93 -0.04 -0.84 16 3 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 4 C -0.14 -0.80 6.67 30.46 0.20 -0.60 16 5 C 0.52 8.67 8.08 87.99 0.71 9.38 16 6 O -0.52 -12.78 17.48 -2.86 -0.05 -12.83 16 7 N -0.57 -10.20 2.53 -756.64 -1.91 -12.11 16 8 C 0.07 1.37 5.22 86.38 0.45 1.82 16 9 C 0.11 2.77 3.49 30.60 0.11 2.88 16 10 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 11 O -0.56 -15.82 12.67 -143.93 -1.82 -17.64 16 12 C 0.03 1.00 4.36 71.98 0.31 1.31 16 13 O -0.33 -13.68 10.09 -85.23 -0.86 -14.54 16 14 C 0.00 -0.13 6.71 22.79 0.15 0.02 16 15 C -0.16 -7.27 8.96 22.11 0.20 -7.07 16 16 C -0.21 -10.33 9.74 22.48 0.22 -10.11 16 17 C 0.05 3.05 5.57 -21.28 -0.12 2.93 16 18 C -0.50 -27.26 9.04 23.40 0.21 -27.04 16 19 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 20 C 0.03 1.62 5.13 85.24 0.44 2.06 16 21 N -0.83 -44.58 10.96 21.82 0.24 -44.34 16 22 Si 0.98 38.90 29.60 68.60 2.03 40.93 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 25 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 26 C -0.15 -8.43 8.64 22.48 0.19 -8.24 16 27 C -0.13 -6.79 9.92 22.11 0.22 -6.57 16 28 C 0.53 8.85 7.05 87.99 0.62 9.47 16 29 O -0.51 -11.83 17.24 -2.86 -0.05 -11.88 16 30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.14 0.42 7.74 -2.39 -0.02 0.40 16 34 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.11 2.02 7.83 -2.39 -0.02 2.00 16 36 H 0.11 1.90 7.82 -2.39 -0.02 1.88 16 37 H 0.39 9.12 9.05 -74.06 -0.67 8.45 16 38 H 0.07 1.92 7.64 -2.39 -0.02 1.91 16 39 H 0.07 2.04 7.66 -2.38 -0.02 2.02 16 40 H 0.13 4.70 6.27 -2.91 -0.02 4.68 16 41 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 43 H 0.11 6.27 6.16 -2.91 -0.02 6.25 16 44 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -75.12 374.58 2.48 -72.64 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.37 Total: 30.66 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 4.54 Total: -30.89 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -1.67 Total: -56.46 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -2.78 Total: -56.89 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -75.12 2.48 -72.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176627811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.723 kcal (2) G-P(sol) polarization free energy of solvation -75.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds