Wall clock time and date at job start Tue Mar 31 2020 18:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34230 * 117.00200 * 2 1 4 4 O 1.20830 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00319 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.51259 * 304.89956 * 5 3 2 7 7 C 1.53301 * 109.51470 * 64.99978 * 5 3 2 8 8 N 1.47152 * 108.38625 * 172.22646 * 7 5 3 9 9 C 1.34779 * 120.97779 * 129.44219 * 8 7 5 10 10 O 1.21553 * 119.99591 * 186.29829 * 9 8 7 11 11 C 1.47880 * 120.00208 * 6.29554 * 9 8 7 12 12 C 1.39921 * 120.02455 * 215.75047 * 11 9 8 13 13 C 1.38329 * 120.35853 * 179.97438 * 12 11 9 14 14 C 1.37753 * 120.41199 * 0.02562 * 13 12 11 15 15 C 1.40746 * 120.04153 * 0.02562 * 14 13 12 16 16 C 1.41440 * 120.18140 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99965 * 156.39555 * 16 15 14 18 18 C 1.39937 * 119.99722 * 336.39740 * 16 15 14 19 19 N 1.30828 * 119.99858 * 343.55199 * 18 16 15 20 20 Si 1.86794 * 119.99806 * 163.55938 * 18 16 15 21 21 H 1.48503 * 109.47252 * 94.37991 * 20 18 16 22 22 H 1.48503 * 109.47139 * 214.37644 * 20 18 16 23 23 H 1.48497 * 109.47483 * 334.37536 * 20 18 16 24 24 C 1.38998 * 120.02909 * 36.02742 * 11 9 8 25 25 C 1.47151 * 118.03457 * 309.71709 * 8 7 5 26 26 C 1.52873 * 108.61033 * 50.22834 * 25 8 7 27 27 H 1.09002 * 109.37094 * 67.81071 * 26 25 8 28 28 C 1.52997 * 109.58554 * 187.92280 * 26 25 8 29 29 O 1.42963 * 109.51545 * 184.74606 * 5 3 2 30 30 H 1.09004 * 109.47421 * 299.99804 * 1 2 3 31 31 H 1.09005 * 109.47216 * 60.00164 * 1 2 3 32 32 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.67682 * 52.50100 * 7 5 3 34 34 H 1.08996 * 109.70766 * 291.97158 * 7 5 3 35 35 H 1.07998 * 119.82205 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.79655 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.97984 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99527 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.19974 * 0.02562 * 24 11 9 40 40 H 1.08994 * 109.67847 * 170.00995 * 25 8 7 41 41 H 1.09003 * 109.67705 * 290.55816 * 25 8 7 42 42 H 1.08995 * 109.47406 * 179.87985 * 28 26 25 43 43 H 1.09005 * 109.46859 * 299.88149 * 28 26 25 44 44 H 1.09000 * 109.46690 * 59.87875 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9603 0.7071 0.8435 7 6 4.1101 0.6916 -1.3086 8 7 5.5578 0.9493 -1.3656 9 6 6.4292 -0.0434 -1.6332 10 8 7.6251 0.1625 -1.5635 11 6 5.9303 -1.3831 -2.0116 12 6 6.6127 -2.5293 -1.5891 13 6 6.1519 -3.7859 -1.9386 14 6 5.0167 -3.9236 -2.7068 15 6 4.3176 -2.7822 -3.1420 16 6 3.1521 -2.9202 -3.9312 17 1 2.4163 -2.1299 -3.9504 18 6 2.9523 -4.0807 -4.6871 19 7 3.9553 -4.8857 -4.9272 20 14 1.2537 -4.4804 -5.3536 21 1 1.1327 -3.9658 -6.7413 22 1 1.0552 -5.9521 -5.3524 23 1 0.2228 -3.8413 -4.4969 24 6 4.7866 -1.5047 -2.7920 25 6 6.0263 2.3217 -1.1156 26 6 5.3888 2.8266 0.1789 27 1 5.7900 2.2650 1.0226 28 6 5.7012 4.3135 0.3584 29 8 3.9728 2.6409 0.1120 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.6185 1.1699 -2.1557 34 1 3.9271 -0.3825 -1.3366 35 1 7.5039 -2.4325 -0.9869 36 1 6.6854 -4.6645 -1.6072 37 1 4.6629 -4.9081 -2.9752 38 1 3.8167 -5.6904 -5.4509 39 1 4.2595 -0.6226 -3.1245 40 1 7.1116 2.3264 -1.0151 41 1 5.7309 2.9668 -1.9430 42 1 5.2442 4.6721 1.2807 43 1 6.7810 4.4543 0.4094 44 1 5.3013 4.8734 -0.4869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177720616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:19 Heat of formation + Delta-G solvation = -129.828555 kcal Electronic energy + Delta-G solvation = -29465.563723 eV Core-core repulsion = 25348.498927 eV Total energy + Delta-G solvation = -4117.064795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.91078 -39.92771 -38.45089 -37.11058 -36.43317 -34.69742 -33.80699 -33.31738 -30.11270 -30.00056 -29.63499 -27.51915 -26.41571 -25.44589 -24.57206 -22.48740 -21.42967 -20.94811 -20.72409 -19.32067 -17.71766 -17.66156 -17.04536 -16.68604 -16.42962 -16.04240 -15.80545 -15.58589 -15.13369 -14.94450 -14.57912 -14.09234 -13.99520 -13.44534 -13.24389 -13.09616 -12.91850 -12.84705 -12.53401 -12.44126 -12.35797 -12.09180 -11.99276 -11.64086 -11.50352 -11.25419 -11.19026 -11.04343 -10.83581 -10.76386 -10.56911 -10.40397 -10.29692 -10.21164 -9.63502 -9.30849 -9.22680 -8.49238 -7.68832 -7.58703 -6.88708 -4.51755 2.04796 2.15160 2.22120 2.65173 3.00041 3.02093 3.04223 3.07230 3.54688 3.76259 3.82796 4.45929 4.49574 4.59382 4.72056 4.85746 4.91213 5.02924 5.08401 5.16246 5.19586 5.32914 5.46231 5.50483 5.51213 5.62451 5.71322 5.76475 5.84734 5.96381 6.10287 6.25673 6.31501 6.51828 6.68358 6.83718 6.83908 6.94519 7.09021 7.25153 7.49732 7.64002 7.67569 7.81393 7.85851 8.02355 8.42964 8.56522 8.71446 8.74712 10.05353 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.004511 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.451303 B = 6205.690545 C = 8168.074991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.345 6.345 3 C 0.474 3.526 4 O -0.488 6.488 5 C 0.088 3.912 6 H 0.102 0.898 7 C 0.080 3.920 8 N -0.617 5.617 9 C 0.575 3.425 10 O -0.547 6.547 11 C -0.116 4.116 12 C -0.179 4.179 13 C -0.113 4.113 14 C -0.137 4.137 15 C 0.103 3.897 16 C -0.459 4.459 17 H 0.080 0.920 18 C 0.076 3.924 19 N -0.793 5.793 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.199 4.199 25 C 0.080 3.920 26 C 0.077 3.923 27 H 0.067 0.933 28 C -0.140 4.140 29 O -0.357 6.357 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.282 0.718 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 8.484 8.472 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.262 6.262 3 C 0.315 3.685 4 O -0.374 6.374 5 C 0.028 3.972 6 H 0.120 0.880 7 C -0.043 4.043 8 N -0.351 5.351 9 C 0.367 3.633 10 O -0.425 6.425 11 C -0.119 4.119 12 C -0.199 4.199 13 C -0.131 4.131 14 C -0.157 4.157 15 C 0.101 3.899 16 C -0.488 4.488 17 H 0.098 0.902 18 C -0.142 4.142 19 N -0.418 5.418 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.219 4.219 25 C -0.043 4.043 26 C 0.018 3.982 27 H 0.085 0.915 28 C -0.198 4.198 29 O -0.276 6.276 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.370 8.825 8.361 12.615 hybrid contribution -0.791 -0.357 -0.499 1.001 sum -4.161 8.468 7.862 12.281 Atomic orbital electron populations 1.23336 0.75549 1.04234 1.02462 1.86540 1.23845 1.32002 1.83780 1.22871 0.90580 0.81944 0.73148 1.90674 1.66553 1.36330 1.43797 1.21792 0.88476 0.85920 1.01027 0.88021 1.22764 0.80966 1.05419 0.95198 1.47980 1.06388 1.08580 1.72179 1.19016 0.85144 0.84524 0.74594 1.90677 1.15673 1.83112 1.53015 1.19215 0.98311 0.90546 1.03796 1.20375 1.01020 0.91482 1.07035 1.20688 0.97516 0.95412 0.99495 1.21644 0.96136 0.99831 0.98087 1.17515 0.92201 0.90224 0.90008 1.19552 1.04432 1.02079 1.22758 0.90236 1.25905 0.98304 0.95290 0.94733 1.69790 1.31445 1.11242 1.29336 0.86293 0.82327 0.78462 0.79667 1.19545 1.19980 1.18325 1.21208 0.97252 0.97339 1.06111 1.22235 1.01689 0.82929 0.97414 1.22522 0.80340 0.98129 0.97165 0.91470 1.21710 1.01990 0.92704 1.03392 1.87984 1.22663 1.22301 1.94635 0.91979 0.91609 0.87489 0.90176 0.84508 0.88444 0.88551 0.85598 0.90673 0.87933 0.87769 0.90692 0.91329 0.90397 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.46 16 2 O -0.35 -4.76 10.56 -39.26 -0.41 -5.17 16 3 C 0.47 7.01 7.29 36.00 0.26 7.27 16 4 O -0.49 -8.26 16.26 -25.46 -0.41 -8.67 16 5 C 0.09 1.24 3.30 -27.73 -0.09 1.15 16 6 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 7 C 0.08 1.23 4.21 -3.53 -0.01 1.22 16 8 N -0.62 -10.21 3.03 -173.63 -0.53 -10.73 16 9 C 0.57 11.58 7.38 -12.31 -0.09 11.49 16 10 O -0.55 -12.17 16.30 5.32 0.09 -12.08 16 11 C -0.12 -2.52 5.25 -105.04 -0.55 -3.07 16 12 C -0.18 -3.93 9.62 -38.92 -0.37 -4.30 16 13 C -0.11 -2.48 10.01 -39.73 -0.40 -2.88 16 14 C -0.14 -3.29 8.70 -38.81 -0.34 -3.63 16 15 C 0.10 2.50 5.59 -106.87 -0.60 1.90 16 16 C -0.46 -11.10 9.06 -37.73 -0.34 -11.45 16 17 H 0.08 1.83 7.90 -52.49 -0.41 1.41 16 18 C 0.08 1.76 5.18 -17.34 -0.09 1.67 16 19 N -0.79 -19.19 10.81 55.55 0.60 -18.59 16 20 Si 0.91 17.37 29.59 -169.99 -5.03 12.34 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 24 C -0.20 -4.42 7.14 -38.44 -0.27 -4.69 16 25 C 0.08 1.09 5.92 -3.75 -0.02 1.07 16 26 C 0.08 0.91 3.39 -26.80 -0.09 0.82 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 C -0.14 -1.28 9.57 37.16 0.36 -0.92 16 29 O -0.36 -5.08 9.57 -55.11 -0.53 -5.61 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.21 7.96 -51.93 -0.41 0.80 16 34 H 0.14 2.32 4.82 -51.93 -0.25 2.06 16 35 H 0.10 2.04 8.00 -52.49 -0.42 1.62 16 36 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.13 3.11 6.02 -52.48 -0.32 2.79 16 38 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 39 H 0.10 2.12 6.11 -52.49 -0.32 1.80 16 40 H 0.10 1.44 7.06 -51.93 -0.37 1.08 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -29.63 367.05 -8.14 -37.78 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.86 Total: 8.08 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.59 Total: -2.89 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: 0.08 Total: -29.32 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.27 Total: -31.53 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.63 -8.14 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177720616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.051 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds